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11 protocols using alamar blue hs

1

Cell Viability Assay with alamarBlue

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Cells were seeded in 96-well solid black bottom assay plates (Corning, Corning, NY, USA) at approximately 12.5% confluence in 100 μL IMDM. Six hours after seeding, 10 μL of cell viability reagent alamarBlue HS (Thermo Fisher Scientific) was added to each well. Fluorescence intensity was measured using EnVision® Multilabel Reader (PerkinElmer, Waltham, MA, USA) after 60 min in the culture medium. The measurement was repeated every 24 h for the following four days.
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2

Automated Fluorometric Cell Viability Assay

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Cell vitality was measured with the resazurin-based cell vitality reagent alamarBlue HS (ThermoFisher) according to the manufacturer’s instructions. Briefly, 100ul of cell culture was mixed with 10ul of alamarBlue HS, incubated for 20 min while shaking at 37 °C, and fluorescence (excitation: 560 nm, emission: 590 nm) was measured on a Tecan Infinite M200 Pro plate reader with monochromator module with a fixed gain setting of 79. Uninfected cells in the same media as all experimental samples were used as live cell standards, and the same samples heated for 5 min at 95 °C were used as dead cell standards. 10% and 50% live cell mixture standards were made to assess accuracy of vitality measurements. Dead cell signal was subtracted as background from all resorufin signal values. Resorufin signal values for all samples were normalized to values pre-infection.
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3

Automated Fluorometric Cell Viability Assay

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Cell vitality was measured with the resazurin-based cell vitality reagent alamarBlue HS (ThermoFisher) according to the manufacturer’s instructions. Briefly, 100ul of cell culture was mixed with 10ul of alamarBlue HS, incubated for 20 min while shaking at 37 °C, and fluorescence (excitation: 560 nm, emission: 590 nm) was measured on a Tecan Infinite M200 Pro plate reader with monochromator module with a fixed gain setting of 79. Uninfected cells in the same media as all experimental samples were used as live cell standards, and the same samples heated for 5 min at 95 °C were used as dead cell standards. 10% and 50% live cell mixture standards were made to assess accuracy of vitality measurements. Dead cell signal was subtracted as background from all resorufin signal values. Resorufin signal values for all samples were normalized to values pre-infection.
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4

Astrocyte Metabolic Activity Quantification

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At the end of the astrocyte scratch assay, the culture medium was replaced with media containing 1X alamarBlue HS (Thermo Fisher A50100). The samples were incubated for 4 hours at 37°C according to the manufacturer’s protocol, and the plate was analyzed on a BioTek Cytation 3 imaging plate reader. Fluorescence was measured with an excitation wavelength of 560 nm and emission of 590 nm. Absorbance was measured at 570 nm and a reference wavelength of 600nm (for normalization). A higher reduction of the resazurin in alamarBlue to fluorescent resorufin indicates higher metabolic activity.
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5

Cytotoxicity Assay for A549 Cells

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A549 cells were plated at a density of 1 × 102 cells per well (for 7 days) and at 1.4 × 102 cells per well (3 days). After allowing 24 h for attachment, agents were aliquoted to the wells to reach final concentrations of 10, 5, 2.5, 1.25 and 0.625 µM (1, 0.5, 0.25, 0.125, 0.625 µM for pyrithione) and incubated for 3 and 7 days. Cell viability was assessed by incubating with Alamar Blue HS (Invitrogen A50101). After incubation, 20 µL of Alamar Blue (final concentration 10% v/v) was added to each well and the plates were further incubated for 2 h. Fluorescence intensity was recorded with excitation at 530 nm and emission at 590 nm. These conditions were determined empirically, and this procedure was repeated to generate three biological repeats with a minimum of 6 technical repeats in each set.
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6

Cell Proliferation Analysis via AlamarBlue and xCelligence

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Cells were seeded at 500/well in 95 μl in 96-well microplates (Greiner, 655090) and measured every 12 or 24 h by adding alamarBlue HS (Invitrogen) (1/20) and reading in a fluorimeter after 1 hour's incubation, according to the manufacturer's instructions. NM-PP1 or DMSO was added to the cells as noted on the figure. Continuous xCelligence analysis was carried out in 96-well E-Plates (H003957) after seeding the cells at 500/well and NM or DMSO was added as noted on the figure, 36 hours after seeding.
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7

Cell Proliferation Assay with Alamar Blue

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Cells were seeded at 500/well in 95 μl in 96‐well microplates (Greiner, 655090) and measured every 12 or 24 h by adding alamarBlue HS (Invitrogen) (1/20) and reading in a fluorimeter after 1 h's incubation, according to the manufacturer's instructions. 1‐NA‐PP1 or DMSO was added to the cells as noted on the figure.
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8

Alamar Blue Cell Viability Assay

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Cytotoxicity of lead compounds
was determined by an Alamar Blue HS (Invitrogen) cell viability assay
as per manufacturer’s instructions. Briefly, VeroE6 (ATCC CRL-1586)
cells were grown in Dulbecco’s Modified Eagle Medium (DMEM)
with 4.5 g/L d-Glucose, l-Glutamine and 110 mg/L
sodium pyruvate (Gibco), 10% fetal calf serum (Sigma) and penicillin-streptomycin
(100 U/ml, Gibco). Five ×104 cells were seeded into
wells of a 96-well flat bottom culture plate (Corning) and once adhered,
compounds were added at varying concentrations and incubated for 24
or 72 h (37 °C, 5% CO2). Alamar Blue HS cell viability
reagent (Invitrogen) was added, and the cells further incubated for
2–4 h. Relative fluorescent units (RFU) were determined per
well at ex/em 560/590 nm (Tecan Infinite M1000 pro plate reader).
Increasing RFU is proportional to cell viability.
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9

Alamar Blue Viability Assay

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Cells were incubated for 2 h in Alamar Blue HS (Invitrogen, Massachusetts, U.S.A.) and the fluorescence signal was measured according to the manufacturer’s instructions using the iD3 SpectraMax microplate reader (Molecular Devices, California, USA). For cell growth curves, cells were incubated with Alamar Blue HS at the indicated timepoints.
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10

Cell Viability Assessment with Alamar Blue

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An Alamar Blue assay to assess cellular viability was performed. Therefore, 5 × 103 HeLa cells (ATCC, Manassas, USA), each suspended in 100 µL cell culture medium, were seeded on day 0. To prepare the incubation of the cells with Z-OMPD, aliquots of the medium, containing Z-OMPD (0-15 mM) were prepared and adjusted to pH = 7.9, which was the measured pH of the native cell medium outside of the cell incubator, using 1 M NaOH. After 24 h, on day 1 of the experiment, cell medium was exchanged with the medium containing Z-OMPD at concentrations between 0 and 15 mM to start the incubation. After 24 h incubation, on day 2 of the experiment, the Z-OMPD-containing medium was exchanged with the native medium to finalize the incubation. To read out the cell viability, Alamar Blue HS (Invitrogen, Waltham, Massachusetts) was added (10 % in medium per well) and the cells were incubated for three more hours, in order to enable the resazurin to be reduced to resorufin. The fluorescence signal of resorufin was measured with a spectrofluorophotometer (BioTek, Bad Friedrichshall, Germany). Three technical replications of every condition were performed. The experiment was repeated with the cell viability readout happening on day 4 of the experiment (2 days after the end of Z-OMPD incubation).
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