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12 protocols using horseradish peroxidase conjugated anti mouse

1

Antibody Acquisition for Protein Detection

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Anti-myc (Cell Signalling), anti-actin (Genscript), and anti-GFP (JL-8) (Takara Bio USA) were obtained commercially. Horseradish peroxidase (HRP)-conjugated anti-mouse, and anti-rabbit secondary antibodies were purchased from Bio-rad, Hercules, CA, USA. Anti-hnRNP-C was purchased from Santa Cruz Biotechnology, Dallas, TX, USA. NP anti-serum was raised in-house and described previously [34 (link)].
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2

Antibody Characterization for Alzheimer's Biomarkers

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The following antibodies were used in western blot analysis: anti-human PSEN1-CTF (MAB5232) and anti-human PSEN1-NTF (MAB1563) purchased from Merck Millipore; anti-human PSEN2-CTF (EP1515Y) purchased from Abcam; rabbit anti-PEN2 (B126) and mouse anti-NCSTN (9C3) kindly provided by Prof. Wim Annaert. Horse radish peroxidase (HRP)-conjugated anti-mouse (#1721011) and anti-rabbit IgG (#1721019) purchased from Bio-Rad and anti-rat IgG (#61-9520) purchased from Thermo Fisher. Antibodies used in the MesoScale Discovery (MSD) multispot Aβ ELISA were obtained through collaboration with Janssen Pharmaceutica NV (Beerse, Belgium). The MSD ELISA capture antibodies were JRD/Aβ37/3 for Aβ37, JRF AB038 for Aβ38, JRF/cAb40/28 for Aβ40, JRF/cAb42/26 for Aβ42, and the detection antibody was JRF/AbN/25 raised against the N terminus of Aβ. The antibodies used in the Aβ43 ELISA were anti-Aβ43 rabbit IgG (capture antibody) and anti-Aβ (N) (82E1) mouse IgG Fab’ (detection antibody), both supplied with the ELISA kit (IBL).
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3

Antibody Characterization for GSEC Expression

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To assess proper reconstitution of GSEC expression, the following antibodies were used: anti‐human PSEN1‐CTF (MAB5232) from Merck, anti‐human PSEN1‐NTF (MAB1563) from Millipore, horseradish peroxidase (HRP)‐conjugated anti‐mouse (#1721011) and anti‐rabbit IgG (#1721019) from Bio‐Rad, and HRP‐conjugated anti‐rat IgG (#P0450) from Agilent. NCSTN and PEN‐2 were detected using in‐house developed antibodies (9C3 for NCSTN and B126.2 for PEN‐2). ELISA capture antibodies (JRD/Aβ37/3 for Aβ37, JRF AB038 for Aβ38, JRF/cAb40/28 for Aβ40, and JRF/cAb42/26 for Aβ42), Aβ N‐terminal detection antibody (JRF/AbN/25) and imidazole‐based (GSM II/III) modulators (synthesis described in Velter et al, 2014 (link)) were obtained through collaboration with Janssen Pharmaceutica NV (Beerse, Belgium). Complete protease inhibitor (PI) tablets and fluorogenic peptide were purchased from Sigma‐Aldrich, and GSEC inhibitor X (#565771) from Calbiochem.
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4

Western Blot Analysis of Alzheimer's Proteins

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The following antibodies were used in western blot analysis: anti-human PSEN1-CTF (MAB5232) and anti-human PSEN1-NTF (MAB1563) purchased from Merck Millipore; anti-human PSEN2-CTF (EP1515Y) purchased from Abcam; rabbit anti-PEN2 (B126) and mouse anti-NCSTN (9C3) kindly provided by Prof. Wim Annaert. Horse radish peroxidase (HRP)-conjugated anti-mouse (#1721011) and anti-rabbit IgG (#1721019) purchased from Bio-Rad and anti-rat IgG (#61-9520) purchased from Thermo Fisher. Antibodies used in the MesoScale Discovery (MSD) multispot Aβ ELISA were obtained through collaboration with Janssen Pharmaceutica NV (Beerse, Belgium). The MSD ELISA capture antibodies were JRD/Aβ37/3 for Aβ37, JRF AB038 for Aβ38, JRF/cAb40/28 for Aβ40, JRF/cAb42/26 for Aβ42, and the detection antibody was JRF/AbN/25 raised against the N terminus of Aβ. The antibodies used in the Aβ43 ELISA were anti-Aβ43 rabbit IgG (capture antibody) and anti-Aβ (N) (82E1) mouse IgG Fab’ (detection antibody), both supplied with the ELISA kit (IBL).
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5

Western Blot Analysis of FLAG-Tagged Proteins

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20 µg of whole cell extracts were separated on SDS-PAGE and transferred on a nitrocellulose membrane using a transfer apparatus according to the manufacturer’s protocols (Bio-Rad, ON, Canada). For detection of FLAG-tagged AC isoforms, after transferring, the membranes were first blocked by incubation with 3% fish gelatin prepared TBST (10 mM Tris, pH 8.0, 150 mM NaCl, 0.5% Tween 20) for 60 min, and the membrane was incubated with antibodies against anti-FLAG (1:1000), β-actin (1:10,000) at 4 °C for 12 h. Membranes were washed thrice with TBST for 10 min and for β-actin (Invitrogen, ON, Canada), incubated with a 1:5000 dilution of horseradish peroxidase-conjugated anti-mouse (Bio-Rad) for 2 h. Anti-FLAG was HRP conjugated (ab49763, Abcam, Cambridge, MA, USA). Blots were washed with TBST three times and developed with the clarity max ECL system (Bio-Rad) according to the manufacturer’s instructions.
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6

Quantification of Membrane Protein Expression

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Membrane proteins (45 μg/lane) were obtained with the Pierce Cell Surface Protein Isolation Kit (Pierce Biotechnology, Thermo Scientific) and protein extracts were subjected to SDS-PAGE and then transferred to PVDF membrane (Immobilon-P, Millipore, Bedford, MA, USA). Due to difficulty finding a non-modulated housekeeping membrane protein in resistant tumor cells, it was used Ponceau stain. PVDF membrane was blocked in 5% w/v non-fat dry milk, 0.1% tween-20, Tris-buffered saline (TBS) over day at room temperature and probed with the following antibodies, diluted in 2% w/v non-fat dry milk 0.1% tween-20 TBS: anti-MRP1 mouse monoclonal antibody (diluted 1:250, Cruz Biotechnology, Santa Cruz, CA, USA). After overnight incubation at 4 °C, the membrane was washed with 0.1% v/v tween-20 TBS for 30 min and subjected for 1 h at room temperature to a horseradish peroxidase-conjugated anti-mouse (diluted 1:3000, Bio-Rad Laboratories). The membrane was washed again with 0.1% v/v tween-20 TBS for 30 min and proteins were detected and quantified by ChemiDoc™ MP System (Bio-Rad Laboratories). Densitometric analysis was carried out using Image J software (http://rsbweb.nih.gov/ij/).
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7

Western Blot Analysis of SLC25A42 in Zebrafish

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Zebrafish embryos at 3 dpf were homogenized in buffer containing Tris-Cl (20 mM, pH 7.6), NaCl (50 mM), EDTA (1 mM), NP-40 (0.1%) and complete protease inhibitor cocktail (Roche Applied Sciences, Indianapolis, IN, USA). Following centrifugation at 11000g at 4°C for 15 min, protein concentration in supernatants was determined by BCA protein assay (Pierce, Rockford, IL, USA). Proteins were separated by electrophoresis on 4–12% gradient Tris–glycine gels (Invitrogen) and transferred onto polyvinylidene difluoride membrane (Invitrogen). Membranes were blocked in PBS containing 5% casein and 0.1% Tween-20, then incubated with either mouse polyclonal anti-SLC25A42 (1:500, ab69383, Abcam, Cambridge, MA, USA) or mouse monoclonal anti-β-actin (1:1000, A5441, Sigma, St. Louis, MO) primary antibodies. After washing, membranes were incubated with horseradish peroxidase-conjugated anti-mouse (1:5000, 170-6516) IgG secondary antibody (BioRad, Hercules, CA, USA). Proteins were detected using the SuperSignal chemiluminescent substrate kit (Pierce).
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8

Protein Complex Identification by IP-Western

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VP-GFP, GFP and RFP in Input and IP fractions were detected by Western blot with anti-GFP JL-8 monoclonal antibody (BD Biosciences Clontech, USA) and anti-mRFP 3F5 monoclonal antibody, respectively (Chromotek, Germany). Horseradish Peroxidase conjugated anti-mouse (Bio-Rad, USA) was used as secondary antibody. Silver-stained polyacrylamide gels (10%) were run of Input and IP fractions as previously described [40 (link)]. Protein sizes were estimated using the ECL™ Rainbow™ Marker Full-range protein ladder 12–225 kDa (Amersham™). Different exposure times were taken according to the protein accumulation.
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9

Protein Expression Analysis Protocol

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Cells were seeded in six-well plates in DMEM. One day later, after washing in DPBS, the cells were treated with diluted sample in DMEM with FBS 2% for pre-determined amounts of time. Following treatment, the cells were washed in DPBS and lysed in RIPA buffer (Noble Bio, Hwaseong, Korea) containing protease inhibitor cocktail (PIC, Sigma Aldrich) and 1 mM phenylmethylsulfonyl fluoride (PMSF, Sigma Aldrich) for 30 min at 4°C. The lysate was subjected to centrifugation at 13,000 rpm for 20 min and the resulting supernatant was stored on ice for immediate use or –20°C for longer term storage. The protein content of the supernatant was quantified using a BCA Protein Assay Reagent Kit (Thermo Scientific) with bovine serum albumin as the standard. Equal amounts of protein were separated by NuPAGE™ 12% Bis-Tris Gel (Invitrogen) and transferred onto polyvinylidene fluoride (PVDF) membranes. Antibodies against β-actin (1:20,000, Sigma Aldrich), p62 (1:1,000, Abcam) were used at 4°C for 24 h. Blots were then incubated with Horse-radish peroxidase conjugated anti-mouse (1:20,000, Bio-Rad, Hercules, CA, USA) or anti-rabbit (1:5,000, Bethyl, Montgomery, TX, USA) secondary antibodies as appropriate at 4°C for 2 h. Blots were visualized by adding a chemiluminescent substrate (Thermo Scientific) and imaged with a FlourChemE imager (HNS Bio, Seoul, Korea).
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10

Western Blot Analysis of PRKG1 in miR-200c-3p Transfected HEK293 Cells

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HEK293 cells were seeded at density of 2.0 × 105 cells/mL per well in a 6-well plate and then transfected with miR-200c-3p mimic or miR-CTRL using Lipofectamine 2000 and after 72 h, analyzed for Western blotting assay. Cells were lysed in 1X Dulbecco’s Phosphate-Buffered Saline (D-PBS), 0.025% NP-40, protease inhibitors (Roche, Pasadena, CA, USA), and phospho-inhibitors (Roche, Pasadena, CA, USA). Supernatant was cleared by centrifugation. Proteins were resolved by electrophoresis on 10% SDS-gel followed by transfer to nitrocellulose membrane. Membranes were probed with antiPRKG1 (1:500, #3248, Cell Signaling, Dellaertweg, The Netherlands) and antiGAPDH (1:1000, sc-47724 Santa Cruz, CA, USA) antibodies. Detection was achieved using horseradish peroxidase-conjugated antimouse (1:10000, 1706516, BioRad, Hercules, CA, USA) and antirabbit (1:10000, #1706515, BioRad, Hercules, CA, USA) antibodies. Signals were acquired using Amersham Hyperfilm ECL (GE Healthcare, Little Chalfont, UK) chemiluminescence system. To analyze the PRKG1 protein level, the relative band intensity was quantified using Image J software, and the ratio of PRKG1 to GAPDH level was calculated.
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