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3 protocols using sc 33735

1

Immunocytochemistry for Membrane Proteins

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Cells were grown on glass coverslips and fixed in 4% paraformaldehyde (Sigma-Aldrich) for 10 min at room temperature. Cells were blocked in 5% BSA for 1 h at room temperature. Cells were stained with the PMA1 antibody (1:100; SC-33735, Santa Cruz Biotechnology) or CA-IX antibody for 2 h (1:500, ab184630, Abcam) and washed in PBS. Cells were further incubated for 1 h with secondary anti-rabbit-Alexa Fluor 594 antibody (1:2000; A11072, Invitrogen) or anti-mouse-Alexa Fluor 594(1:2000; A11005, Invitrogen) and additionally incubated in WGA, cell membrane marker (W6748, Invitrogen) for 10 min on ice. The cells were mounted for fluorescence with DAPI (H-1200, Vector). The slides were viewed by Leica inverted SP5 AOBS confocal microscope, and micrographs were taken, and images were subsequently acquired in the Moffitt Analytic Microscopy Core Facility by using dual photomultiplier tube detectors and LAS AF software (Leica Microsystems). For detection of intracellular PMA1, cells were fixed and permeabilized with 1:1 mixture of methanol and acetone, and immunostained with PMA1 antibody for 1 h, followed by 1 h of incubation with the secondary anti-rabbit Alexa488 antibody (Molecular Probes, Invitrogen). The cells were mounted and viewed by fluorescence microscopy.
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2

Immunohistochemical Analysis of Key Metabolic Markers

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The cross-sections were stained with various antibodies as per normal laboratory protocol in the Moffitt Tissue Core Histology Facility. Positive and negative controls were used for each antibody staining, and staining condition was optimized for each antibody. The antibodies were utilized in this study as follows: rabbit anti-Saccharomyces cerevisiae PMA1 (sc-33735, Santa Cruz Biotechnology); rabbit anti-human CA-IX (ab15086, Abcam, Cambridge, MA); rabbit anti-human MCT1 (sc-50324, Santa Cruz, CA); rabbit anti-human GLUT1 (ab15309, Abcam, Cambridge, MA); rabbit anti-human NHE1 (sc-28758, Santa Cruz, CA); rabbit anti-human ER( #RM9101,ThermoFisher Scientific, MA). Histological stained slides were scanned using the Aperio ScanScope XT digital slide scanner and positivity analysis for each target gene staining was carried out using Aperio ImageScope V 10.2.1.2314 software. Positive cell percentage was calculated for PMA1, CA9, MCT1, GLUT1, and NHE1 expression on the entire tissue cross-section using algorithm membrane 9 in which positive cells include the cells with (3 +) strong, (2 +) medium, and (1 +) weak membrane intensity staining.
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3

Immunofluorescent Staining of PMA1 and CA-IX

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Cells were grown on glass coverslips and fixed in 4% paraformaldehyde (Sigma-Aldrich) for 10 min at room temperature. Cells were blocked in 5% BSA for 1hr at room temperature. Cells were stained with the PMA1 antibody (1:100; SC-33735, Santa Cruz Biotechnology) or CA-IX antibody for 2 hours (1:500, ab184630, Abcam) and washed in PBS. Cells were further incubated for 1 h with secondary anti-rabbit-Alexa Fluor 594 antibody (1:2000; A11072, Invitrogen) or anti-mouse-Alexa Fluor 594(1:2000; A11005, Invitrogen) and additionally incubated in WGA, cell membrane marker (W6748, Invitrogen) for 10 min on ice. The cells were mounted for fluorescence with DAPI (H-1200, Vector). The slides were viewed by Leica inverted SP5 AOBS confocal microscope, and micrographs were taken, and images were subsequently acquired in the Moffitt Analytic Microscopy Core Facility by using dual photomultiplier tube detectors and LAS AF software (Leica Microsystems). For detection of intracellular PMA1, cells were fixed and permeabilized with 1:1 mixture of methanol and acetone, and immunostained with PMA1 antibody for 1h, followed by 1 hour of incubation with the secondary anti-rabbit Alexa488 antibody (Molecular Probes, Invitrogen). The cells were mounted and viewed by fluorescence microscopy.
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