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6 protocols using nb300 229

1

Chromosome Spread Analysis of Spermatocytes

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Chromosome spreads of prophase I spermatocytes were performed as previously described (Peters et al., 1997 (link); Kolas et al., 2005 (link)). In brief, seminiferous tubules were separated, cut into pieces with scissors, and incubated in hypotonic buffer (0.45% NaCl) for 40 min. Cell suspensions were fixed with 1% paraformaldehyde containing 0.15% Triton X-100 and 0.5 M sodium borate and then air-dried on slides. Samples were blocked with 1x ADB (1% normal donkey serum, 0.03% BSA, and 0.05% Triton X-100) for 1 h and then incubated with primary antibodies at 37°C for 12–16 h. After being blocked with 1x ADB for 5–6 h at room temperature, the samples incubated in fluorescently labeled secondary antibodies at 37 °C for 1.5 h. The slides were viewed under a LSM700 confocal microscope (Zeiss, Germany). Primary antibodies were as follows: SYCP1 (1:100, NB300-229; Novus Biologicals), SYCP3 (1:500, ab97672; Abcam), γH2AX (1:500, ab2893; Abcam).
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2

Antibody Sources and Characteristics

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Rabbit antibodies specific for SYCP3 (ab15093), RPA (ab87272), SUN1 (ab103021), H2A (ab18255), H2B (ab1790) and LAMIN B1 (ab16048) and mouse antibodies specific for SYCP3 (ab97672), γH2AX (ab26350) and TRF1 (ab10579) were purchased from Abcam. A rabbit antibody specific for DMC1 (sc-22768) was purchased from Santa Cruz Biotechnology. Rabbit antibodies specific for TRF2 (NB110-57130) and SYCP1 (NB300-229) were purchased from Novus Biologicals (Lihhleton, CO, USA). Mouse antibodies specific for α-tubulin (T9026) and FLAG (F1804) were purchased from Sigma-Aldrich. The rabbit antibody specific for the DDDDK-tag (PM020) that was used for co-immunoprecipitation was purchased from Medical & Biological Laboratories (Nagoya, JP).
The generation of the antibody specific for SHCBP1L has been previously described (36 (link)). The anti-FBXO47 antibody recognizes the peptide corresponding to the amino acid sequence DLDLPGTKEETALLE-C of FBXO47.
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3

Chromosome Spread Immunolabeling Protocol

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The drying-down technique [56 (link)] was used for preparation of chromosome spreads from spermatocytes of 14-dpp and 8-weeks B6, Cxxc1 control or CKO mice. Chromosome spread slides were immunolabeled with anti-PRDM9 (1:200), CXXC1 (1:1000), SYCP1 (1:300, Novus, NB300-229), SYCP3 (1:400, Novus, NB300-231), γH2AX (1:1000, Abcam, ab26350), DMC1 (1:200, Santa Cruz, sc-8973), RAD51 (1:200, Santa Cruz, H-92), RPA (1:300, Abcam, ab87272) or MLH1 (1:100, BD Pharmingen, 550838) antibodies.
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4

Germ Cell Chromatin Spread Imaging

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Germ cell chromatin spreads were prepared as previously described [22 (link)]. The primary antibody to SYCP1 (NB300-229, Novus Biologicals) was diluted 1:500 and the SYCP3 antibody (sc-74569, Santa Cruz) was diluted 1:50. Images were captured using a Zeiss CellObserver Z1 linked to an ORCA-Flash 4.0 CMOS camera (Hamamatsu) and analyzed with the Zeiss ZEN 2012 blue edition image software.
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5

Immunostaining of Mouse Testis Cells

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The testes were freshly dissected from adult mice (7 wk) and decapsulated. The testes were ground in PBS, and the cells were collected and centrifuged. The cell pellets were washed several times in PBS and suspended in hypotonic buffer (30 mM Tris at pH 7.5, 17 mM Tris sodium citrate, 5 mM EDTA, and 50 mM sucrose). After keeping for 5 min, the cells were centrifuged and the supernatant discarded, followed by making suspension in 100 mM sucrose. The cell suspension was spread onto slides dipped in formaldehyde solution (1% formaldehyde, 0.15% Triton X-100 in water adjusted with sodium borate to pH 9.2). Slides were then placed in a humidified chamber overnight and air-dried at room temperature. For immunostaining, slides were rinsed for 5 min in PBS, and then incubated for 30 min in blocking buffer (3% BSA, 10% normal goat serum in PBS). The slides were incubated with primary antibodies for Scp1 (NB300-229, Novus) and Scp3 (sc-74569, Santa Cruz Biotechnology) in blocking buffer overnight at 4°C, followed by incubation with goat anti-mouse IgG (H + L) Alexa Fluor 568 (A11004) and goat anti-rabbit IgG (H + L) Alexa Fluor 488 (A11008) (Invitrogen) secondary antibodies and DAPI for 1 h at room temperature. The slides were then washed with PBS and mounted.
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6

Visualizing Synaptonemal Complex in Platypus

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To observe the central element we used an antibody (Novus, NB300-229) raised against the central element protein; Synaptonemal Complex Protein 1 (SYCP1). We employed the use of an SMC3 antibody (Abcam, Ab9263) to visualise the axial core in platypus since it has been previously shown that SMC3 recruitment follows synaptic progression39 (link).
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