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6 protocols using deltavision fluorescence microscopy system

1

Fluorescence Microscopy of Yeast Cells

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A DeltaVision fluorescence microscopy system (Applied Precision), which is based on an Olympus wide-field IX71 fluorescence microscope equipped with an oil-immersion objective lens (Plan Apo 60×; NA = 1.4; Olympus) and CoolSNAP HQ2 CCD camera (Photometrics), was used to image the yeast cells. For time-lapse observation, living cells were mounted on 35-mm glass-bottomed culture dishes (MatTek) coated with 0.2 mg/mL soybean lectin (Sigma) and observed at 26 °C unless otherwise specified. A set of images of 15 focal planes at 0.5 μm intervals was taken at each time point. Images were deconvolved using the DeltaVision SoftWorx software (Applied Precision).
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2

Quantifying Microglial Phagocytic Capacity

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To assess the phagocytic activity, NEL-MG at a density of 2 × 105 cells/mL were seeded on a 12 mm coverslip in 24-well cell culture dishes. NEL-MG were treated with 2 μL of red fluorescent latex beads (2 μm, Sigma-Aldrich, St. Louis, MO, USA), HiLyte™ Fluor 488-labeled amyloid β peptide 25–35 (2 μL), or pHrodo-conjugated synaptosomes for 2 h at 37 °C. HiLyte™ Fluor 488-labeled amyloid β peptide 25–35 (Anaspec, AS-633308) was prepared according to the manufacturer’s protocol. Phagocytic activity was then stopped by adding 2 mL of ice-cold PBS. The cells were washed twice with ice-cold PBS, fixed, stained with a microglial marker (IBA-1), and counterstained with DAPI. The cells were analyzed using confocal microscopy (TCS SP5, Leica) and a DeltaVision fluorescence microscopy system (Applied Precision).
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3

Fluorescence Imaging of Fission Yeast Telomeres

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A DeltaVision fluorescence microscopy system (Applied Precision), which is based on an Olympus wide-field IX71 fluorescence microscope equipped with an oil-immersion objective lens (Plan Apo 60×; NA = 1.4; Olympus) and a CoolSNAP HQ2 CCD camera (Photometrics), in a temperature-control room, was used for imaging of the fission yeast cells41 (link). Cells were grown on YES agar at 30 °C or 26 °C for the cdc10-129ts strain. To induce meiosis, the cells were transferred to an ME plate at 26 °C. After the formation of zygotes, the cells were suspended in EMM-N medium. Then, the cells were mounted on a 24 mm × 60 mm cover glass coated with 0.2% (w/v) lectin. Images were collected of 15 focal planes at 0.5 μm intervals. To measure the telomere-ade8 or ade8-ade1 distance, horsetail nuclei were observed in zygotes. The distance was measured only when the nucleus was moving straight in either direction (not making a turn). Time-lapse observation was performed as described12 (link). Images were deconvolved with SoftWorx software (Applied Precision). The distance was measured using Priism software (University of California, San Francisco)42 (link). Each trace was initiated at the center of the GFP focus.
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4

Budding Yeast Fluorescence Microscopy

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Budding yeast cells were imaged using either the Delta Vision Fluorescence Microscopy System (Applied Precision, Issaquah, WA) fitted with a Cool SNAP HQ CCD camera (Photometrics, Tucson, AZ) or a Leica Microsystems DM5500A microscope (Bannockburn, IL) linked to an ORCA-ER CCD camera (Hamamatsu, Japan).
For both systems, a 100X oil immersion objective was used. At various time points, images were collected using a GFP (FITC) filter set and a DNA (DAPI/A4) filter set. Reference images were also taken using DIC. For z stacks, images were captured at 0.5 micrometer intervals over 5 micrometers. Images captured on the Delta Vision system were analyzed and deconvolved using softWoRx (Applied Precision), while the images captured using the Leica Microsystems apparatus were analyzed using Leica Application Suite, Advanced Fluorescence software.
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5

Visualizing Mitochondria and Lysosomes in Live iNeurons

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Cultured iNeurons were grown in imaging dishes (Chamber slide Lab-Tek II 4; Fisher). To visualize mitochondria, the cells were transfected with a Mito-GFP plasmid two days before the analysis. To visualize the lysosomes in live cells, iNeurons were incubated with 250 nM Lysotracker-Red DND-99 dye (Invitrogen) in medium at 37°C for 30 min. After washing twice with PBS the medium was replaced with fresh medium. Images were taken one frame every 3 sec, for 3 min. Detection of mitochondrial membrane potential changes in live iNeurons were performed using membrane-permeant tetraethylbenzimidazolylcarbocyanine iodide (JC-1) staining kit (Sigma) according to manufacturer's instruction. To measure the speed of mitochondria, kymographs were generated and analyzed using ImageJ (Multiple Kymograph plugin). For psychosine toxicity test, cells were treated with psychosine and then imaged for 3 h, 2 frames every 30 min. Live imaging was acquired using a DeltaVision fluorescence microscopy system (Applied Precision) installed at the Hanyang Center for Research Facilities, Seoul.
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6

Quantifying Microglial Phagocytic Activity

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To assess the phagocytic activity, NEL-MG at a density of 2 × 10 5 cells/mL were seeded on a 12-mm coverslip in 24-well cell culture dishes. NEL-MG were treated with 2 μL of red fluorescent latex beads (2 μm, Sigma-Aldrich, St. Louis, MO, USA),
HiLyte TM Fluor 488-labeled amyloid β peptide 25-35 (2 μL), or pHrodo-conjugated synaptosomes for 2 h at 37 °C. HiLyte TM Fluor 488-labeled amyloid β peptide 25-35 (Anaspec, AS-633308) was prepared according to the manufacturer's protocol.
Phagocytic activity was then stopped by adding 2 mL of ice-cold PBS. The cells were washed twice with ice-cold PBS, fixed, stained with a microglial marker (IBA-1), and counterstained with DAPI. The cells were analyzed using confocal microscopy (TCS SP5, Leica) and a DeltaVision fluorescence microscopy system (Applied Precision).
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