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4 protocols using ab17725

1

PLA Assay for Protein-Protein Interactions

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The PLA assay was preformed according to the manufacturer’s instructions (OLINK Bioscience). In brief, cells were plated on 12 mm coverslips pre-coated with 10 μg ml−1 fibronectin (Sigma) and fixed with 3% paraformaldehyde. When indicated, cells were ultraviolet irradiated with 10 J m−2 at time points before fixation. Permeabilization was done with 0.1% Triton X-100. Coverslips were blocked and then probed with rabbit anti polη (AB17725, Abcam, diluted 1:500) and mouse anti-NPM1 (FC82291, Sigma, diluted 1:500). Anti-rabbit-plus and anti-mouse-minus PLA probes were added, ligated and amplified according to the manufacturer’s instructions. Immunostaining of NPM1 was done using anti-NPM1 (FC82291, Sigma, 1:500). Images were captured with Zeiss Axio-Observer Z1 microscope and analysed with CellProfiller software68 (link).
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2

Western Blot Antibody Panel

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The following primary antibodies were used for western blotting mouse anti-actin (A4700, Sigma Aldrich), PCNA (PC10, Millipore), rabbit anti-Cdt1 (D10F11, Cell Signalling Technology), DNMT1 (NB100-56519, Novus Biologicals), Fen1 (EPR4459(2), GeneTex), Ligase I (PA5-27820, Thermo Scientific), p21 (EPR362, abcam), Polη (ab17725, abcam), Ubiquitinated-PCNA (D5C7P, Cell Signalling Technology).
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3

Antibody Characterization for DNA Damage

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The following antibodies were used in this study: anti-SPRTN (rabbit, polyclonal) raised against the N-terminal part (1–240 aa) of SPRTN (dilution 1:1,000, home made); anti-SPRTN raised against the C-terminal part of SPRTN (dilution 1:1,000, Atlas, HPA 025073); anti–DNA polymerase η (dilution 1:1,000, Abcam, Ab17725); anti–phosphorylated γ-H2AX (Ser139) (dilution 1:300, Millipore, 05-636); anti-zebrafish γ-H2AX (dilution 1:1,000, gift of J. Amatruda); anti-rabbit 53BP1 (dilution 1:200, Santa Cruz, sc-22760); anti–Ki-67 (dilution 1:200, Millipore, MAB 4190); anti-rat BrdU (dilution 1:500, Abcam, 6326); anti-mouse BrdU (dilution 1:100, Becton Dickinson, 347850); anti-mouse Alexa Flour 488 (dilution 1:300, Invitrogen, A21202), anti-mouse Alexa Flour 594 (dilution 1:300, Invitrogen, A11020); anti-mouse horseradish peroxidase (HRP) (dilution 1:10,000, Sigma, A2304); and anti-rabbit HRP (1:10,000, Sigma, A0545).
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4

Antibody Detection Protocol for DNA Repair Factors

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Antibodies to the following proteins were used in this study: sheep α-FAN1 (1:500, a kind gift from John Rouse, University of Dundee), rabbit α-FANCD2 (1:5000, NB100-182, Novus Biologicals), mouse α-PCNA (1:1000, PC10, SantaCruz), rabbit α-ubiquitylated-PCNA (1:1000, D5C7P, Cell Signaling), mouse α-RAD18 (1:500, ab57447, Abcam), rabbit α-MLH1 (1:5000, ab92312, Abcam), rabbit α-Polη (1:1000, ab17725, Abcam), rabbit α-REV1 (1:1000, H-300, SantaCruz), rabbit α-GFP (1:1000, ab290, Abcam), rabbit α-LaminB1 (1:1000, ab16048, Abcam), rabbit α-histone H2B (1:1000, ab1790, Abcam), mouse α−MUS81 (1:1000, M1445, Sigma Aldrich), rabbit α−USP1 (1:1000, Bethyl labs. A301-700A).
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