The largest database of trusted experimental protocols

Nanophotometer

Manufactured by Implen
Sourced in Germany, United States, United Kingdom, Australia, China

The NanoPhotometer is a compact and precise spectrophotometer designed for the measurement of nucleic acids and proteins. It utilizes a LED light source and a CCD detector to provide accurate and reliable absorbance measurements in the UV-Vis range.

Automatically generated - may contain errors

943 protocols using nanophotometer

1

In vitro Synthesis of dsRNA and ssRNA

Check if the same lab product or an alternative is used in the 5 most similar protocols
dsRNA was synthesized in vitro using the T7 RiboMAXTM Express RNAi System (Promega, cat. no. P1700, USA) according to the manufacturer’s instructions. ACT fragments of different length were PCR amplified using specific primers containing the T7 promoter sequence (see Supplementary Table S2). The PCR products were purified with a gel extraction kit (Omega, China). The reaction mixture consisted of 2 µl T7 Express Enzyme Mix, 10 µl RiboMAX™ Express T7 2 × Buffer, and 1 µg of DNA template. The mixture was incubated at 37 °C for 2–6 h and 70 °C for 10 min, then slowly cooled to room temperature (~20 min) to anneal of the dsRNA. The DNA template and single‐stranded RNA (ssRNA) were removed by DNase (removing DNA template) and RNase A (removing ssRNA) treatments, respectively. The yield of dsRNA was determined by ultraviolet absorbance at a wavelength of 260 nm with a Nano Photometer (Implen, Germany) and the integrity of the full length was verified by RNA gel electrophoresis.
For ssRNA synthesis, the ACT200 fragment was amplified with primer pair act200-F/T7act200Rev (see Supplementary Table S2). In vitro transcription reactions were conducted with T7 RNA polymerase (Thermo Fisher Scientific, USA) following the manufacturer’s instructions. The RNA yield was determined with a Nano Photometer (Implen, Germany) and kept at −80 °C until further use.
+ Open protocol
+ Expand
2

Silencing Serpin7 Gene in Locusts

Check if the same lab product or an alternative is used in the 5 most similar protocols
Recombinant plasmid including serpin7 gene fragment was extracted by using EZgene™ Plasmid Miniprep Kit (Biomiga, San Diego, CA, USA). Using the recombinant plasmid as template, the serpin7 gene was amplified by primers serpin7‐2F/serpin7‐2R (Table 1). The amplified PCR products were then purified with TIANgel Midi Purification Kit (Tiangen), followed by quantification through NanoPhotometer™ (Implen GmbH, Munchen, Germany). Serpin7 double‐stranded RNA (dsRNA) was synthesized using the T7 RiboMAX™ Express RNAi System Kit (Promega, Madison, WI, USA). The expected size of serpin7’s dsRNA was 602 bp (Fig. 1). dsRNA concentration of serpin7 was detected by a NanoPhotometer™ (Implen, GmbH, München, Germany), and the final concentration was adjusted to 1 μg·μL−1 for further analysis.
Twenty‐five female L. migratoria were selected from each photoperiod within 24 h after adults were injected with 10 μL serpin7 dsRNA (μg·μL−1) between the third and fourth abdominal segments. Double‐distilled water (ddH2O) as control was injected in a similar manner to the selected females. Dissecting the whole bodies of dsRNA‐injected and control group’s adult locusts after 36 h, we obtained hind leg, ovary and fat body. The efficiency of RNAi‐mediated knockdown was determined with real‐time quantitative PCR (RT‐qPCR).
+ Open protocol
+ Expand
3

Colorimetric Ascorbic Acid Quantification

Check if the same lab product or an alternative is used in the 5 most similar protocols
Ascorbic acid determination was carried out by a colorimetric method (Stevens et al., 2006 (link)) with modifications reported by Rigano et al. (2014) (link). Briefly, 500 mg of frozen powder were extracted with 300 μl of ice cold 6% TCA. The mixture was vortexed, incubated for 15 min on ice and centrifuged at 14000 rpm for 20 min at 4°C. Twenty microliters of supernatant were placed in an eppendorf tube with 20 μl of 0.4 M phosphate buffer (pH 7.4) and 10 μl of double distilled (dd) H2O. Then, 80 μl of color reagent solution were prepared by mixing solution A [31% H3PO4, 4.6% (w/v) TCA and 0.6% (w/v) FeCl3] with solution B [4% 2,2′-dipyridil (w/v)]. The mixture was incubated at 37°C for 40 min and measured at 525 nm by a NanoPhotometerTM (Implen). Three separated biological replicates for each sample and three technical assays for each biological repetition were measured. The concentration was expressed in nmol of AsA according to the standard curve, designed over a range of 0–70 nmol; then the values were converted into mg/100 g of fresh weight (FW).
+ Open protocol
+ Expand
4

Automated Genomic DNA Extraction

Check if the same lab product or an alternative is used in the 5 most similar protocols
Genomic DNA was extracted using an automatic station (MagCore HF16 Plus, Diatech Lab Line, Jesi, Italy). DNA concentration and quality were determined by a Nano Photometer TM (Implen, Munchen, Germany) and stored at −20 °C until use. DNA samples were processed if they met the following criteria: OD260/280 ratio = ≥1.7, concentration = ≥15 ng/μL, no degradation signals visible on agarose gel, were processed.
+ Open protocol
+ Expand
5

Histone H3 Methylation Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Milli-Q water (Merck Millipore,
Darmstadt), methanol, and acetic acid (VWR, Vienna, Austria) were
used in all experiments. As model peptides, C-terminal GK-biotinylated
histone H3 sequences (amino acid residues 21 to 44) without and with
native modifications (mono-, di-, and trimethylation) at K27 were
purchased (AnaSpec, Fremont, CA, USA) with a purity of >95%, in
which
K27 of the full-length histone corresponds to K7 of the model peptides.
Peptides were desalted using MWCO 2000 Vivaspin centrifugal concentrators
(Sartorius, Göttingen, Germany) at 7900 rcf, 6× ammonium
acetate 100 mM (Sigma, Vienna, Austria), and 6× H2O. Peptide concentration was determined by UV absorption at 280 nm
using an Implen Nano PhotometerTM (Implen, München, Germany).
For electrospray ionization, equimolar mixtures (0.1 μM each)
of unmodified (referred to as “wild-type” in the text),
mono-, di-, and trimethylated peptides (referred to as “K7
1m”, “K7 2m”, and “K7 3m”, respectively)
in 50:50 H2O/CH3OH and 1% vol CH3COOH, pH ∼ 3.0 were prepared from 100 μM stock solutions
of each peptide in H2O.
+ Open protocol
+ Expand
6

Histone H3 Peptide Modification Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Milli-Q water (Merck Millipore,
Darmstadt, Germany), methanol, and acetic acid (VWR, Vienna, Austria)
were used in all experiments. C-terminal GK-biotinylated histone H3
sequences (amino acid residues 21–44) with native modifications
(acetylation at K27 and trimethylation at K36) were purchased (AnaSpec,
Fremont, CA, USA) with a purity of >95%, in which K27 of the full-length
histone corresponds to K7 of the model peptides and K36 in the histone
corresponds to K16 in the peptides.
Peptides were desalted using
MWCO 2000 Vivaspin centrifugal concentrators (Sartorius, Göttingen,
Germany) at 7900 rcf, 6× ammonium acetate 100 mM (Sigma, Vienna,
Austria), and 6× H2O. Peptide concentration was determined
by UV absorption at 280 nm using an Implen Nano PhotometerTM (Implen,
München, Germany). For electrospray ionization, equimolar mixtures
(0.2 μM each) of acetylated and trimethylated peptides (referred
to as “K7 Ac” and “K16 3m”, respectively,
in the text) in 50:50 H2O/CH3OH and 1% vol CH3COOH, pH ∼ 3.0 were prepared from 100 μM stock
solutions of each peptide in H2O.
+ Open protocol
+ Expand
7

Genomic DNA Extraction from Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
Individual samples were manually homogenized using a Kontec pestle, and genomic DNA was extracted with 350 μL of 6% Chelex-100 solution23 (link). Briefly, the homogenate and chelex solution were incubated at 65 °C for 3 h and intermittently vortexed. After centrifugation at 14000 rpm for 10 min, the supernatant was transferred to an Eppendorf tube and stored at 4 °C overnight. DNA concentrations and purity were determined with a NanophotometerTM (Implen); in all samples, A260/A280 varied 1.7–1.8. The extracted DNA was then stored at −20 °C until sample preparation for liquid chromatography mass spectrometry (LC-MS) analysis.
+ Open protocol
+ Expand
8

Genomic DNA Extraction from Thrips

Check if the same lab product or an alternative is used in the 5 most similar protocols
Genomic DNA from individual thrips was extracted using the PureLinkTM Genomic DNA Mini Kit (Invitrogen, Carlsbad, CA, USA). Each sample was placed into a 1.5 mL centrifuge tube containing 180 μL of digestion buffer and 20 μL of proteinase K (50 μg/mL), and then incubated at 55 °C for 4 hours. Following the manufacturer’s guidelines, DNA samples were extracted. The DNA concentration was measured using a NanoPhotometerTM (Implen GmbH, Schatzbogen, Germany).
+ Open protocol
+ Expand
9

DNA and Total RNA Isolation

Check if the same lab product or an alternative is used in the 5 most similar protocols
DNA and total RNA were isolated using DNAzol® and RNAzol® (Invitrogen, Thermo Fisher Scientific, Paisley, UK) reagents respectively, according to the manufacturer’s instructions.
DNA was resuspended in 40mM NaOH (Merck Life Science, Dorset, UK) and RNA was resuspended in RNase-free water; both were quantified using a NanoPhotometerTM (Implen, München, Germany). Extracts were stored at –20 °C and –80 °C, respectively.
+ Open protocol
+ Expand
10

Serum RNA Extraction and cDNA Synthesis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Serum RNA was extracted from 400 μl serum using Ambion mirVana PARIS kit (Life Technology, USA) according to the manufacturer's protocol. The RNA concentration and purity were measured with a spectrophotometer (NanoPhotometerTM, IMPLEN, GER). Complementary DNA was extracted from 10 μg total RNA using the RevertAid First Strand cDNA Synthesis Kit (Thermo Scientific, MA, USA). The mix was incubated at 42°C for 60 min and 70°C for 5 min. The reverse transcription products were stored at −20°C until use for RT-qPCR.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!