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17 protocols using anti rac1

1

Measuring Small GTPase Activities

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Neutrophils were lysed and centrifuged at 14,000 g for 10 min at 4°C. The supernatants were incubated with the GST-PBD (p21-binding domain of PAK1) beads for Rac1 and Cdc42 activity assays or GST-RBD (Rho-binding domain of Rhotekin) for RhoA activity assay following the manufacturer’s instructions. Levels of bead-bound GTP-Rac1/Cdc42/RhoA and total Rac1/Cdc42/RhoA were analyzed by immunoblot with antibodies as follows: anti-Rac1 (1:1,000; Abcam), anti-Cdc42 (1:1,000; Abcam), anti-RhoA (1:1,000; Abcam).
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2

Investigating CCL2's Impact on RhoA and Rac1

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In order to determine whether CCL2 could affect RhoA and Rac1, the experiment was divided into two groups. Firstly, LNMTca8113 cells were starved for 24 h. One group was treated with 100 ng/mL CCL2, and the other group was not treated with CCL2. The Lysis Buffer (Solarbio,Protein Extraction Kit) was added, and the protein concentration was standardized and adjusted to 2 mg/mL. The beads were eluted in 1× SDS buffer. Primary antibodies were as follows: anti-RhoA (Abcam,Hong Kong Limited) and anti-Rac1 (Abcam,Hong Kong Limited). The signal intensity was measured using a spectrophotometer. Finally, the image analysis software(GraphPad Prism 9) was used for data processing.
GST-PAK pull-down assay followed the instruction book of RhoA/Rac1 Activation Assay Combo Biochem Kit (Cytoskeleton, Inc, USA.) .
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3

Rac1 and ROCK1 activation in endothelial cells

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Vessels were solubilized in lysis buffer containing 20 mmol/L Tris‐HCl, 150 mmol/L NaCl, 20 mmol/L NaF, 2 mmol/L sodium orthovanadate, 1% Nonidet, 100 μg/mL leupeptin, 100 μg/mL aprotinin, and 1 mmol/L phenylmethylsulfonyl fluoride. Then, samples were left on ice for 30 minutes and centrifuged at 10 621g for 20 minutes, and the supernatants were used to perform immunoblot analysis. Total protein levels were determined using the Bradford method. Rac1 activity was determined using a commercially available kit (Cell BioLabs Inc, San Diego, CA, STA‐401‐1) as described below. Forty micrograms of proteins were resolved on 10% SDS‐PAGE, transferred to a nitrocellulose membrane, and immunoblotted with anti‐Rac1‐GTP (1:1000, Cell BioLabs) or anti‐Rac1 (1:1000, Abcam, Cambridge, UK); with anti–RhoA‐associated kinase 1 (ROCK1) (1:1000 (abcam); with anti‐p–endothelial nitric oxide synthase (eNOS) phosphorylated on serine 1177 (1:800, Abcam) or anti‐total‐eNOS (1:800, Abcam); or with anti‐β‐actin (1:1000, Cell Signaling, Danvers, MA). Horseradish‐peroxidase–conjugated secondary antibodies were used at 1:3000 dilution (Bio‐Rad Laboratories, Hercules, CA). Protein bands were detected by ECL Prime (Amersham Biosciences, Little Chalfont, UK), and densitometry analysis was performed using Quantity One software (Bio‐Rad Laboratories).
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4

Protein Expression Analysis by Western Blot

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Cells were lysed in RIPA buffer (Beyotime, Jiangsu, China) containing protease inhibitor cocktail (Beyotime). Total protein was quantified by the Bradford protein assay (Bio-Rad, Hercules, CA). Samples were denatured at 100 °C for 5 min. Equal amounts of total protein were analyzed by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and western blotting using polyvinylidene fluoride microporous membranes (Bio-Rad). Membranes were incubated with primary antibody overnight at 4 °C, followed by incubation with horseradish peroxidase-linked secondary antibody at room temperature for 1 hour and detected with SuperSignal West Pico Chemiluminescent Substrate (Thermo). The primary antibodies, anti-Rac1 and anti-Neuropilin1 were purchased from Abcam (Cambridge, UK), while anti-β-catenin and anti-GAPDH were purchased from Cell Signaling Technology (Danvers, MA).
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5

Quantifying Protein Knockdown by Immunoblotting

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Primary antibodies used were polyclonal rabbit anti-Septin 7 (IBL, #18991), and monoclonal mouse anti-β-actin (Sigma-Aldrich, #A5316), anti-CDC42 (BD Transduction Laboratories, #610929), anti-RAC1 (Abcam, Cat# ab33186) as well as anti-ArpC3 p21-Arc (Clone26, #612234, BD Transduction Laboratories). Secondary antibodies were anti-mouse (Bio-Rad, #170-6516) and anti-rabbit (Bio-Rad, #170-6515) horseradish peroxidase-conjugated. To quantify knockdown efficiency by immunoblotting, siRNA treated HeLa cells were lysed with RIPA buffer containing protease inhibitor (Roche, #11836170001) for 30 min at 4°C. Protein quantification of lysates was done with the Micro BCA™ Protein Assay Kit (Thermo Fisher Scientific, #23235) and 10 μg of total protein was loaded into NuPAGE 4%–12% Bis-Tris Protein Gels (Thermo Fisher Scientific, #NP0321BOX) or 12% SDS-PAGE gels. Proteins were transferred to a nitrocellulose membrane using the Trans-Blot® Turbo RTA Mini Nitrocellulose Transfer Kit (Bio-Rad, #1704270) and Trans-Blot© Turbo Transfer System (Bio-Rad, #1704150) or tank blotting system in Towbin Buffer (Tris 25 mM, Glycine 190 mM, 20% Methanol pH 8.3) during 1h at 300 mA at 4°C. Antibody detection was carried out with the SuperSignal West Pico PLUS Chemiluminescent Substrate (Thermo Fischer Scientific, #34577) with actin as loading control.
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6

Protein Extraction and Western Blot Analysis

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The nuclear and cytoplasmic proteins were obtained using the Nuclear and Cytoplasmic Protein Extraction Kit (Beyotime, P0028) following the manufacturer’s instructions. Western blotting was performed as described previously [14 (link)]. Briefly, equal amounts of extracts were loaded onto the SDS polyacrylamide gels, electrophoresed, and blotted onto the PVDF membranes (Millipore, IPVH00010). The membrane was blocked with 5% skimmed milk, followed by incubation with primary antibodies at 4 °C overnight. Then, the membranes were incubated with the HRP-conjugated secondary antibodies and detected using an ECL kit (Beyotime, P0018FM).
The primary antibodies included anti-KDM6A (CST, 33510), anti-ARHGDIB (Proteintech, 16,122–1-AP), anti-FOXA1 (Abcam, ab23738), anti-EZH2 (Abcam, ab228697), anti-H3K27me3 (Abcam, ab6002), anti-H3K27ac (CST, 8173), anti-H3K4me1 (CST, 5326), anti-Rac1 (Abcam, ab211161), anti-β-actin (Sigma Aldrich, A5441), anti-Histone H3 (Abways, CY6587) and anti-α-Tubulin (Santa Cruz, sc-32,293).
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7

Molecular Mechanisms in Inflammatory Response

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Trypsin-EDTA and Dulbecco's modified Eagle's medium (DMEM) were bought from Gibco (Grand Island, NY, USA). PD98059, dihydroethidium (DHE), Apocynin, Diphenyleneiodonium (DPI), Polyinosinic-polycytidylic acid (poly(I:C)), collagenase B, Pyrrolidine dithiocarbamate (PDTC), penicillin and streptomycin were all purchased from Sigma (St. Louis, MO, USA). Anti-PKR, anti-p-PKR,anti-PKC, anti-p-PKC, anti-NOX-1, anti-p47, anti-Rac-1, were all obtained from Abcam (Cambridge, UK). Anti-β-actin, anti-ERK, anti-p-ERK, anti-COX-2, anti-PPAR-γ were all obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). HRP-conjugated anti-rabbit secondary antibodies were purchased from Transduction Laboratories (CA, USA). Antioxidant enzymes kits were obtained from EMD Millipore (Calbiochem, Gibbstown, NJ). IL-8 ELISA kit was purchased from R&D Systems (Minneapolis, MN, USA).
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8

Quantification of Rac1 and ERK Activation

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Cells were plated at a density of 2 × 106 cells/well in 10 cm and grown to 70–80% confluence. The cells were then incubated with 10 μM EHT 1864 for 15, 30, 60, and 120 min. Cells were washed with cold PBS and lysed in IP lysis buffer (20 mMTris pH 7.4, 150 mM NaCl, 5 mM MgCl2, 0.5% NP-40, 10% glycerol, pH 7.4) supplemented with a protease inhibitor cocktail (Sigma-Aldrich Co, St. Louis, MO, USA). After normalization, lysates were incubated with 20 μg PAK-PBD agarose for 60 min at 4 ℃ with rotation, and then the beads were collected for Western Blotting analysis.
Equal amounts of total protein were boiled for 5 min in 5× sample buffer and fractionated by 12% SDS-PAGE. Samples were then transferred to PVDF Membranes (Millipore, Danvers, MA, USA). Immunoblots were detected using the ECL System (Millipore) with horseradish peroxidase-conjugated secondary antibodies (Sigma-Aldrich Co, St. Louis, MO, USA). The following first antibodies were used: anti-Rac1 (Abcam, Cambridge, UK), anti-p-Erk1/2 (Cell Signaling Technology, Danvers, MA, USA), and anti-Erk1/2 (Cell Signaling Technology, Danvers, MA, USA).
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9

Western Blot Analysis of Signaling Proteins

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Western blot analysis was carried out using standard methods. Total protein was extracted from the cultured cells or tumor tissues with lysis buffer. Protein concentration was determined by using a BCA method. The protein sample was then separated by 8-10% SDS-PAGE and transferred onto PVDF membranes. The membranes were incubated with primary antibodies overnight at 4°C. Membranes were probed with anti-RAB1B (1:1000), anti-Ras (1:5000), anti-Raf1 (1:1000), anti-Rac1 (1:500), anti-RhoA (1:5000), anti-CDC42 (1:1000), anti-β-actin (1:5000), and HRP conjugated anti-mouse (1:5000) and anti-rabbit (1:5000) (Abcam, Burlingame, CA).
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10

Immunohistochemical Analysis of Metabolic Markers

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Immunohistochemistry (IHC) was performed on human specimens and xenograft mouse tumors as described previously (Li et al., 2015b) using anti‐RAC1 (1 : 200 dilution; Abcam, Cambridge, UK), anti‐Ki67 (ZM0166, ready‐to‐use; ZSGB‐BIO, Beijing, China), anti‐PKM (1 : 200 dilution; Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti‐LDHA (1 : 200 dilution; Santa Cruz Biotechnology, Santa Cruz, CA, USA), and anti‐HK1 (1 : 200 dilution; Santa Cruz Biotechnology, Santa Cruz, CA, USA) antibodies according to the manufacturers’ instructions.
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