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LC3B-II is a protein that serves as a marker for autophagy, a cellular process in which damaged or unwanted components are degraded and recycled. It is a form of the LC3B protein that becomes lipidated and associates with autophagic vesicles during the formation of autophagosomes, a key step in autophagy. LC3B-II can be detected and quantified to monitor autophagic activity.

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19 protocols using lc3b 2

1

Immunostaining of Apoptosis and Autophagy Markers

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For immunohistochemistry or immunofluorescent staining, paraffin-embedded heart sections were deparaffinized, rehydrated in xylene and graded ethanol, treated with antigen retrieval solution in boiled water for 20 min, and subjected to hydrogen peroxide for 30 min after cooling down. Tissue sections were blocked with 5% BSA in room temperature for 1 h prior to incubation overnight at 4°C with primary antibodies against cleaved caspase-3 (Cell Signaling Technology 9661) and LC3 BII (Cell Signaling Technology 12741). After incubation with secondary antibody, for immunohistochemical analysis, tissue sections were stained with diaminobenzidine (DAB) (Servicebio, Wuhan, China) and counterstained with hematoxylin, followed by light microscope observation (Olympus); for immunofluorescent analysis, tissue section images were captured by a fluorescent microscope (Olympus). The positive staining areas were calculated and analyzed by Image-Pro Plus 6.0 software.
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2

Investigating Protein Turnover Mechanisms

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MDA-MB-231 shC and PHD2 knockdown #3 cells (2×105 cells per plate) were plated on 6 cm dishes and cultured for 1 day in full serum. 16 h before treatment, the cells were cultured in starvation medium (DMEM containing 0.1% FBS), supplemented with either cycloheximide (10 mM), or cycloheximide (10 mM) together with the lysosome inhibitor chloroquine (100 mM) for 16 h. To inhibit the proteasome, the cells were starved and pre-treated with cycloheximide for 16 h, followed by 2 h pre-treatment with MG132 (10 mM). Afterwards the cells were treated with EGF (100 ng/ml) for 0, 1, 2, 3 and 4 h, cell lysates were prepared as described above. To verify lysosomal and proteasomal inhibition, lysates from treated cells were checked for accumulation of LC3B II (#2775, Cell Signaling) and ubiquitin (sc-9133, Santa Cruz).
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3

Protein Expression Analysis in Cardiac Tissues

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The homogenized ventricles tissue or cultured cells were incubated in lysis buffer (pH 7.4) containing 50 mM Tris-HCl (pH 7.4), 150 mM NaCl, 5 mM EDTA, 25 mM NaF, 1% Triton-X 100, 1% NP-40, 0.1 mM Na3VO4, 12.5 mM b-glycerophosphate, 1 mM phenylmethanesulfonylfluoride (PMSF) and complete protease inhibitor cocktail. Insoluble heart tissues or cell fractions were removed by centrifugation at 13,000 × g, 4°C for 30 min. The concentration of the extracted proteins was measured by bicinchonininc acid assay (Sigma-Aldrich, St. Louis, MO, USA). The extracted proteins were boiled for 3–5 min. in 5× loading buffer. The expression of AT1 receptor, LC3b-II, beclin-1 and phosphorylation of Akt (p-Akt) were detected by immune-blotting with antibodies against AT1 receptor (catalogue no.sc-1173G; Santa Cruz Biotechnology, Santa Cruz, CA, USA), LC3b-II (catalogue no. 2775; Cell Signaling Technology, Danvers, MA, USA), beclin-1 (catalogue no. 3495; Cell Signaling Technology), and p-Akt (catalogue no. 9275; Cell Signaling Technology), and detection was performed by using an ECL Western-blotting Detection Reagents (RPN2106; GE Healthcare, Little Chalfont, Buckinghamshire, UK) visualized densitometry with LAS-300 Image software.
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4

Quantifying Cardiomyocyte Morphology and Autophagy

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Following cell culture on silicon-based plates in serum-free DMEM for 48 hours, cardiomyocytes or COS7 cells were incubated with anti-α-MHC (Upstate, catalogue 05-716, USA) and LC3b-II (Cell Signaling Technology Inc. catalogue 2775, USA). The samples were then incubated with secondary antibodies conjugated with FITC or Alex (Invitrogen, catalogue A21206, USA) according to the manufacturer's instructions. The surface areas of cardiomyocytes and LC3b-II were determined using an image analysis software (Leica Qwin 3) and were calculated using the mean of 100 to 120 cells from randomly selected fields.
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5

Western Blot Analysis of Autophagy Markers

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The homogenized ventricles tissue or cultured cells were incubated in lysis buffer (50 mM Tris‐HCl, pH 7.4; 150 mM NaCl; 5 mM ethylenediaminetetraacetic acid; 25 mM NaF; 1% Triton‐X 100; 1% NP‐40; 0.1 mM Na3VO4; 12.5 mM b‐glycerophosphate; 1 mM phenylmethanesulfonylfluoride (PMSF) and complete protease inhibitor cocktail). A total of 80 ml of lysis buffer was used in the particulate fractions separation in WB. The lysates were clarified at 13,000 r.p.m. for 10 min., and the supernatants were quantified and subjected to SDS‐PAGE and western blotting on Immobilon‐P membranes (Millipore Corporation, Billerica, Massachusetts). The blotted membranes were incubated with antibodies against LC3b‐II or P62 (Cell Signaling Technology Inc., Beverly, MA, USA), and subjected to an ECL Detection system (GE Healthcare, Little Chalfont, Buckinghamshire, United Kingdom).
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6

Quantifying Autophagy Markers in Cells

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The primary antibodies directed at LC3B-I and LC3B-II were obtained from Cell Signaling (Beverly, MA); the primary antibody directed at GADPH was obtained from Abcam (Cambridge, MA); the secondary antibodies were obtained from Santa Cruz Biotechnology (Santa Cruz, CA). Unless otherwise stated, all other chemicals were obtained from Sigma-Aldrich (St. Louis, MO).
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7

Quantifying Autophagy Dynamics via LC3B-II

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Autophagy was assessed by Western blot analysis of the autophagosome marker LC3B‐II (1/500, Cell Signaling), which correlates with the number of autophagosomes. Anti‐β‐tubulin (1/2,000, Abcam) antibodies were used for normalization. Autophagic flux, that defines the entire autophagy dynamic process, was assessed by the ratio of LC3B‐II between samples in the presence and absence of chloroquine, an autophagy inhibitor. Cells were exposed to chloroquine (10 μM) for 2 h prior to analysis with Western blot. Densitometry was performed using ImageJ software (National Institute of Health).
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8

Mitochondrial and Metabolic Regulation in Cells

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Antibody details are as follows: TFAM (Cell Signaling Technology, 7495); PGC-1α (Santa Cruz Biotechnology, sc-13067); NRF1 (Cell Signaling Technology, 12381); UCP2 (Santa Cruz Biotechnology, sc-6525); CPT1α (Abcam, ab128568); phoshpo-Acetyl-CoA Carboxylase (Cell Signaling Technology, 11818); Acetyl-CoA Carboxylase (Cell Signaling Technology, 4190S); LC3B-II (Cell Signaling Technology, 2775); TFE3 (Cell Signaling Technology, 14779); TFEB (Abcam, ab2636); phospho-ATGL S406 (Abcam ab135093); ATGL (Abcam ab57562); Phospho-p44/42 MAPK (Erk1/2) Thr202/Tyr204 (Cell Signaling Technology, 9101); p44/42 MAPK (Erk1/2) (Cell Signaling Technology, 9102); Phospho-Akt S473 (Cell Signaling Technology, 4058); Akt (Cell Signaling Technology, 9272); SOD1 (Cell Signaling Technology, 4266); ACTB/β-Actin (Santa Cruz Biotechnology, sc-81178); GAPDH (Cell Signaling Technology, 2118).
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9

Quantifying Cardiomyocyte Autophagy Markers

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Following cell culture on silicon‐based plates in serum‐free DMEM for 48 hrs, cardiomyocytes were incubated with anti‐α‐MHC (catalogue 05‐716, Upstate, Millipore Corporation, Billerica, Massachusetts, USA) and LC3b‐II (catalogue 2775; Cell Signaling Technology Inc.). Samples were then incubated with secondary antibodies conjugated with FITC or Alex (catalogue A21206; Invitrogen, Carlsbad, CA, USA) according to the manufacturer's instructions. The surface areas of cardiomyocytes and LC3b‐II were determined using an image analysis software (Leica Qwin 3) and were calculated using the mean of 100 to 120 cells from randomly selected fields.
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10

Sciatic Nerve Immunofluorescence Imaging

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Transverse frozen sections (10-μm thickness) of sciatic nerve were dried, mounted onto slides, and washed in 0.1 M PBS and then blocked in 10 % goat serum and 3 % bovine serum albumin (BSA) for 1 h at 37 °C. After two washes with PBS, the slides were incubated with primary antibodies against MBP (1:1000; Sigma), NF-200 (1:500; Sigma), or LC3B-II (1: 500; Cell Signaling Technology, Danvers, MA, USA) at 4 °C for 12 h, followed by repeated washes with PBS, and then incubated with Alexa 488- or Cy3-conjugated secondary antibodies (1:1000; Invitrogen, Shanghai, China) for 2 h at room temperature. Sections were visualized under an epifluorescence microscope (Leica, DM6000B, Wetzlar, Germany) and imaged at ×400 magnification.
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