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41 protocols using goat anti rabbit hrp

1

Chk1 Inhibitor Sensitivity Assay

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TH-302 was from Syngene, AZD7762 and LY2603618 were from Selleck Chemicals, and PF477736 was from Tocris Bioscience. RIPA was from Sigma. Protease inhibitor cocktails were from Thermo Scientific. ChemiGlow substrate was from Proteinsimple. ECL reagent, Rad51 mAb, actin mAb, goat anti-rabbit HRP, goat anti-mouse HRP, and cell cycle reagents were from EMD Millipore. γH2AX mAb was from Epitomics. Antibodies against phospho-Histone H3, phospho-Cdc2 Y15 antibody, total Chk1, phospho-Chk1 (S296) were from Cell Signaling. Total Cdc2 p34 antibody was from Santa Cruz Biotechnology. FITC-conjugated goat anti-mouse secondary antibody and AlamarBlue cell viability reagent were from Life Technologies. Comet assay kit was from Trevigen. Caspase Glo 3/7 assay system was from Promega. Isogenic p53 proficient and deficient cell line pairs were from Horizon Discovery. All other cell lines were from ATCC.
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2

Quantitative Western Blot Analysis

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An aliquot of 10 μg TCE prepared in NiNTA denaturing incubation buffer were diluted in Laemmli buffer (10% (w/v) glycerol, 2% SDS, 10% (v/v) 2-mercaptoethanol and 0.0625 M Tris-HCl, pH=6.8), boiled for 10 min and separated on a 4–12% SDS-PAGE followed by transfer onto nitrocellulose membranes. For NiNTA purified material, 100 μg of TCE from WT cells or 10 μg of TCE from SUMO3m cells were purified as indicated before on NiNTA beads, eluted in Laemmli buffer and boiled for 10 minutes before SDS-PAGE. Before blocking the membrane for 1 h with 5% non-fat milk in TBST (tris-buffered saline with Tween 20), membranes were briefly stained with 0.1% Ponceau-S in 5% acetic acid to represent total protein content. Membranes were subsequently probed with the primary antibody, as indicated, in blocking solution at 4 °C for 16 h. (SUMO2/3, 1:2,000, Zymed; Ubiquitin, 1:200, Santa Cruz; Histone H3, 1:1,000, Cell Signalling Technologies) The membranes were incubated with secondary antibodies (goat anti-rabbit HRP, EMD Millipore, 1:5,000 and goat anti-mouse HRP, EMD Millipore, 1:5,000) for 1 h at room temperature. Membranes were washed three times with TBST for 10 minutes each. Membranes were revealed using ECL (GE healthcare) as per the manufacturer's instructions, and chemiluminescence was captured on Blue Ray film.
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3

HMGB1 Protein Detection and Quantification

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50 μl of equivalent quantities of concentrated supernatants of cultured tumor cells, in vivo grown tumors, MDSC, macrophages, or 60ug of MEF cell lysates were mixed with 10 μl or the appropriate amount of 6x sample buffer and electrophoresed on 12% SDS-PAGE gels in SDS running buffer (BioRad) at 150 volts for 1 hour, and transferred overnight in transfer buffer (BioRad) at 30 volts to PVDF membranes (GE Healthcare). Membranes were blocked with 5% milk in TBST. HMGB1 was detected with anti-HMGB1 antibody (Epitomics) (5ng/ml in 10ml of 2.5% milk/TBST) followed by goat-anti-rabbit-HRP (Millipore) (40ng/ml in 10ml of 2.5% milk/TBST). Protein was visualized using an HRP detection kit (Denville Scientific, Inc). HMGB1 levels were measured by ELISA according to the manufacturer's directions (IBL International, Hamburg, Germany).
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4

Western Blot Analysis of IRF1/2

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Whole cell lysates were prepared in RIPA buffer with protease inhibitor (Pierce), protein concentrations were determined by BCA assay (Pierce), and 10μg of denatured samples were run on 10% reducing gels (Genscript). After transfer, PVDF membranes (Millipore) were blocked with TBS-Tween 1x + 5% milk and then blotted with rabbit anti-IRF2 (Abcam ab124744) or rabbit anti-IRF1 (Abcam ab186384) in TBS-Tween 1x + 2% milk overnight at 4°C. The following day, membranes were washed 3x with TBS-Tween 1x, goat-anti-rabbit HRP (Millipore) was added for 1hr at RT, membranes were washed 3x, and HRP substrate (Millipore) was added. Following exposure, membranes were stripped (Millipore), blocked, and re-blotted with mouse anti-β-actin (Santa Cruz sc-47778) in TBS-Tween 1x + 2% milk overnight at 4°C. The following day, membranes were prepared as above except anti-mouse HRP (Pierce) was used instead.
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5

Protein Extraction and Western Blot Analysis of HT22 Cells

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Total protein was extracted from cultured HT22 cells using protein lysis buffer (Beyotime Biotech, China). The protein concentration was determined with a BCA kit (P0010S, Beyotime Biotech). The proteins in each sample were separated by 10% SDS-polyacrylamide gel electrophoresis and transferred onto polyvinylidene fluoride (PVDF) membranes. Western blot analysis was carried out using the following primary antibodies raised against target proteins: rabbit anti-SIRT3 (dilution 1:1000, ab189860, Abcam), rabbit anti-SOD2 (dilution 1:1000, ab68155, Abcam), rabbit anti-acetyl-SOD2 (dilution 1:1000, AF3751, Affinity Biosciences, Melbourne, Victoria, Australia), rabbit anti-cleaved caspase 3 (dilution 1:1000, 19677-1-AP, Proteintech, Fisher Scientific), and rabbit anti-β-actin (dilution 1:1000, ab181602, Abcam) antibodies overnight at 4 °C. The following secondary horseradish peroxidase (HRP)-conjugated antibodies were used at 1:5000 dilution: goat anti-rabbit HRP (Millipore, Watford, UK). Blots were visualized with enhanced chemiluminescence detection reagents using a Chemidoc TM Touch Imaging System (Bio-Rad, Hercules, CA).
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6

Hippocampal Protein Expression Analysis

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Total protein was extracted from hippocampal tissues with protein lysis buffer (Beyotime Biotech, China). The protein concentration was determined with a BCA kit (P0010S, Beyotime Biotech). The proteins in each sample were separated by 10% SDS–polyacrylamide gel electrophoresis and transferred onto polyvinylidene fluoride (PVDF) membranes. Western blot analysis was carried out using the following primary antibodies raised against target proteins: rabbit anti-acetyl lysine (dilution 1:1000, ab190479, Abcam, Cambridge, UK), rabbit anti-Sirt3 (dilution 1:1000, ab189860, Abcam), rabbit anti-SOD2 (dilution 1:1000, ab68155, Abcam), rabbit anti-acetyl-SOD2 (dilution 1:1000, AF3751, Affinity Biosciences, China), and rabbit anti-β-actin (dilution 1:1000, ab181602, Abcam) antibodies overnight at 4 °C. The following secondary horseradish peroxidase (HRP)-conjugated antibodies were used at 1:5000 dilution: goat anti-rabbit HRP (12–348, Millipore, Watford, UK) and goat anti-mouse HRP (sc-2005, Santa Cruz Biotechnology, Dallas, TX, UK). Blots were visualized with enhanced chemiluminescence detection reagents using a Chemidoc TM Touch Imaging System (Bio-Rad, Hercules, CA, USA).
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7

AKT Signaling Pathway Regulation

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DiC8-PIP3, In(1,3,4,5)P4, In(1,4,5)P3 (IP3), and GNF362 were obtained from Cambridge Bioscience Ltd. Fura2-AM was obtained from Thermo Fisher Scientific, and U46619 was obtained from Tocris. The phospho-AKT antibody recognizing phospho-Ser473 (clone 11E61) was obtained from Upstate. The pan-AKT antibody (C67E7) recognizing Akt1, Akt2, and Akt3 proteins was obtained from Cell Signaling Technology. Goat antimouse antibody linked to horse-radish peroxide (HRP) and Goat antirabbit-HRP were purchased from Millipore. Antibodies to GAP1(IP4BP/RASA3), ITPKB, ITPKA, and BTK were purchased from (Santa Cruz Biotechnology Inc). The anti-Rap1(A+B) and IP3-ELISA kit was purchased from Abcam Ltd. GTPγS and RalGDS-RBD beads were obtained from Abcam Ltd. PI(3,4,5)P3 PIP beads (PIP3 beads) were obtained from Echelon Biosciences (via 2B Scientific). Vena8 Cellix microfluidic chip channels were obtained from Cellix Ltd.
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8

Comprehensive Western Blot Analysis of Synaptic Proteins

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Western blot analysis was carried out using the following primary antibodies raised against target proteins: anti‐EphB2 (1:300, sc‐100298, Santa Cruz, Insight Biotechnology, Wembley, UK), anti‐EphB1 + EphB2 + EphB3 (1:50, ab171519, Abcam, Cambridge, UK), anti‐phospho‐cofilin (1:1000, ab12866, Abcam, Cambridge, UK), anti‐cofilin (1:1000, ab54532, Abcam, Cambridge, UK), anti‐phospho‐LIMK1 (1:1000, GTX50187, Gene Tex, Irvine, CA), anti‐LIMK1 (1:1000, #3842, Cell Signaling Technology, Boston, MA), anti‐NMDAR1 (1:1000, ab109182, Abcam, Cambridge, UK), anti‐NMDAR2A (1:1000, ab124913, Abcam, Cambridge, UK), anti‐NMDAR2B (1:500, ab28373, Abcam, Cambridge, UK), anti‐β‐Actin (1:1000, #4970, Cell Signaling, Boston, MA), anti‐GluA1 (1:1000, ab31232, Abcam, Cambridge, UK). The following secondary horseradish peroxidase (HRP)‐conjugated antibodies were used at 1: 5000 dilutions: goat anti‐rabbit HRP (12–348, Millipore, Watford, UK); and goat anti‐mouse (sc‐2005, Santa Cruz, Insight Biotechnology, Wembley, UK).
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9

Antibody Production against Plasmodium vivax RBP2-P1

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Antibodies against rRBP2-P1 were produced by Thermo Fisher Scientific (USA). Briefly, two rabbits were immunized intramuscularly with 0.50 mg of rRBP2-P1 emulsified with Freund’s complete adjuvant on day 0, followed by three boosts of the antigen emulsified with incomplete Freund’s adjuvant on days 14, 42, and 56. The serum was collected on day 70. Serum was also used for rabbit IgG purification by protein G Sepharose (GE Healthcare), according to the standard protocol. The specificity of serum for rRBP2-P1 was confirmed by Western blotting against recombinant P. vivax RBPs (rRBPs) (13 (link)). For this, 1 ng of each rRBP was separated on SDS-PAGE gels and transferred to the membrane. The membrane containing proteins was probed with rabbit anti-rRBP2-P1 IgG (1 μg/ml), followed by goat anti-rabbit HRP (0.2 μg/ml; Millipore). Reactions were detected with chemiluminescence. Coomassie-stained SDS-PAGE of the same rRBP samples (1 μg/lane) was used to demonstrate that each sample contained a protein (see Fig. S1 in the supplemental material).
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10

Aβ42 Immunohistochemistry in Brain Tissue

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Brains were dissected and immediately fixed in 5 volumes of PLP fixative (4% paraformaldehyde, 75 mM lysine, 10 mM sodium periodate; pH 7.4) at 4°C overnight and cryoprotected using 10% and 20% glycerol/2% dimethylsulfoxide, in 0.1 M PBS, pH 7.3 (24 h each). Serial, frozen sections (40 µm, coronal) were cut with a sliding microtome from the anterior frontal pole of to the caudal occipital region. All sections intended to be subjects of comparative analyses were processed together and incubated for the same time periods in all of the reagents. For Aβ42 immunohistochemistry, sections were treated with>95% formic acid (Sigma) for 2 min with gentle agitation, washed with PBS, and then transferred to a solution of PBS/10% Goat Serum (Gibco) for 1 h at room temperature (RT). Sections were probed with rabbit anti-Aβ42 (1∶2500, Invitrogen) overnight at RT in 0.3% triton-X 100, 2% Goat Serum (Gibco), 0.008% sodium azide PBS. Following washing, sections were probed with goat anti-Rabbit-HRP (Millipore, 1∶1000) in a solution of 2% Goat Serum/PBS for 3 h at RT. After incubation in a developing solution containing diaminobenzidine (DAB), sodium imidazole, and hydrogen peroxide, sections were mounted on subbed slides. Photomicrographs were taken with 2X and 4X magnification objectives and images of the hippocampus were analyzed with ImageJ software (NIH).
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