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Carboxyfluorescein succinimidyl ester (cfse)

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CFSE (Carboxyfluorescein Succinimidyl Ester) is a fluorescent dye used in cell biology for tracking cell division and proliferation. It covalently binds to intracellular proteins, allowing the dye to be equally distributed between daughter cells during cell division.

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404 protocols using carboxyfluorescein succinimidyl ester (cfse)

1

Assessing in vivo MHC-I Allele Rejection

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Adoptive transfer experiments to assess in vivo rejection were performed134 (link). Splenocytes were isolated from mice lacking expression of murine MHC class I, i.e., H2Kb–H2Db– (referred to as KO cells), WT mice (which were H2Kb+H2Db+) or HLA-C*05-expressing mice, which had been bred to mice lacking expression of murine MHC class I molecules (i.e., HLA-C*05+ H2Kb-H2Db-, referred to as HLA-C*05+ KO cells). Cells were labeled with differential concentrations of CFSE (Sigma-Aldrich) to allow for cellular discrimination as follows: KO cells (0.5 μM of CFSE), WT cells (5 μM CFSE) and HLA-C*05+ KO (5 μM CFSE). Cells were mixed and ~5 × 106 cells per population were injected intravenously into either WT or KIR2DL1-expressing recipient mice. Splenocytes were isolated from recipient mice after 20 h and cells were analyzed by flow cytometry using antibodies for HLA-C (B1.23.2) and H2Kb (AF6-88.5.5.3). A small sample of the injection mix was kept and analyzed by flow cytometry for reference. Survival of both HLA-C*05+ KO and KO cells was calculated relative to the WT cells in each experiment using the injection mix as reference. Relative survival of HLA-C*05+ KO compared to survival of KO cells was plotted.
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2

Functional Assessment of DM-DCs

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Functional regulatory capacity of DM-DCs was assessed by co-culturing DCs with allogeneic CD4+ T cells, which were isolated from peripheral blood using the RosetteSep CD4+ human T cell enrichment cocktail (Stemcell Technologies, Vancouver, Canada) and labeled with carboxyfluorescein diacetate succinimidyl ester (CFSE) (Sigma-Aldrich) at a concentration of 5 uM. On day 5 after harvest, 10058-F4-treated and untreated DM-DCs were seeded in a 96-well U-bottom plates and co-cultured with CFSE-labeled CD4+ T cells at a 1:2 (DC:T cell) ratio in RPMI medium supplemented with 10% heat inactivated fetal calf serum, at 37°C and 5% CO2 for 6 days, after that, CFSE dilution was analyzed by flow cytometry as a measure of proliferation, in addition to IFNγ and TNFα production.
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3

CFSE and PKH26 Staining for Target Cell Identification

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All target cells were stained with the green fluorescent cytosolic cell dye carboxyfluorescein succinimidyl ester (CFSE; Thermo Fisher Scientific, St. Laurent, QC, Canada) to distinguish them from PBMCs or NK effector cells. CFSE staining was performed per the manufacturer’s instructions and as previously described (55 (link)).
For binding experiments and ADCC assays using two target cells combined (i.e., rgp120-coated CEM cells or infected CEM cells 4 days postinfection (p.i.) with HIV combined with uncoated or uninfected CEM cells), CFSE+ cells were also stained with PKH26 red fluorescent membrane cell dye (PKH26 red fluorescent cell linker kit; Sigma-Aldrich) to distinguish them from CFSE+ PKH26 uncoated or uninfected CEM control cells, used as an internal control for nonspecific binding and killing. PKH26 staining was performed as previously described (55 (link)).
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4

Antigen-Specific T Cell Activation Assay

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Different subtypes of DCs were generated from HLA DRB1*0101 donors, as described above. On day 4, DCs were loaded with human type II collagen peptide hCII259–273 or an irrelevant chicken peptide, 6 h before addition of MPLA. Unloaded DCs were used as control. On day 5, DCs were fixed with paraformaldehyde and co-cultured with the transgenic murine HLA-DR1-restricted T cell hybridoma HCII-9.1, specific for the non-glycosylated version of the immunodominant T cell epitope of hCII (hCII259–273) (30 (link)). Co-culture was performed in RPMI medium supplemented with 10% FBS at 1:10 ratio (DCs/HCII-9.1) for 24 h. Supernatants were recovered and IL-2 secretion by the T cell hybridoma was determined based on the proliferative response of the IL-2-dependent cytotoxic T cell line-2 (CTLL-2). CTLL-2 cells were labeled with 5 μM carboxyfluorescein succinimidyl ester (CFSE; Sigma-Aldrich), stimulated with co-culture supernatants for 24 h, and their proliferation was assessed through dilution of CFSE fluorescence by flow cytometry.
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5

Analyzing Influenza Virus Infection in B Cells

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B cells from normal mice were infected with LAIV or incubated with inactivated WSN (BPL treatment) at an MOI of 1 in RPMI 1640 medium containing 0.5 μg/ml TPCK-trypsin and incubated at 37 °C for 1 h. The infected cells were washed five times with PBS and labeled with CFSE (Merck) (1 μM CFSE for 10 min at room temperature, then washed twice with complete RPMI 1640 plus 10% FCS), then incubated with GM-CSF-cultured bone marrow-derived dendritic cells (BMDC) (ratio: 1:3) in DC culture medium (RPMI 1640 supplemented with 20 ng/mL murine GM-CSF (R&D Systems), 10% FBS, 50 μM 2-ME, 100 units/mL penicillin, and 100 μg/mL streptomycin) for 24 h at 37 °C. After incubation, DCs were isolated by M-pluriBead Cell Separation kit (pluriSelect) following the procedure from the company. The number of DCs with the green fluorescent signal was analyzed by flow cytometry, and viral proteins were analyzed by western blot41 (link). Some isolated DCs were incubated in DC culture medium for another 24 h at 37 °C for detection of virus replication.
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6

Staining Leukemia and Lymphoma Cell Lines with CFSE

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THP-1 and HL-60 acute myeloid leukemia (AML) cells, K562 chronic myeloid leukemia (CML) cells, Jurkat acute lymphoblastic leukemia (ALL) cells, RPMI-8226 multiple myeloma (MM) cells and Raji Burkitt's lymphoma cells were obtained from the China Infrastructure of Cell Line Resources (Beijing, China). All cell types were initially maintained in RPMI-1640 medium (Hyclone; GE Healthcare) supplemented with 10% FBS at 37°C in a humidified atmosphere of 5% CO2. The medium was changed every three days. To be stained with CFSE (Sigma-Aldrich; Merck KGaA, Darmstadt, Germany), tumor cells were washed three times and resuspended in RPMI-1640 medium, then mixed with an equal volume of 5 µmol/l CFSE and incubated for 10 min at 37°C. The reaction was terminated by adding an equal volume of FBS for 10 min at 4°C. Finally, cells were washed and resuspended in DMEM/F12 medium supplemented with 10% FBS for experiments.
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7

NK Cell-Mediated Cytotoxicity Assay

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hNK, KHYG-1 and NK-92 cells were co-cultured with NSCLCs: NCI-H1299 or NCI- H1975 at 2.5:1 effector (NK) to target (NSCLC) ratio as was previously determined by the group (Verma et al., 2020 (link)). hNK or NK-92 were cocultured with breast cancer cell lines MCF7 or MDA-MB-231 at 2.5:1 effector (NK) to target (breast cancer cell) ratio. Coculture was carried out in NK MACS media supplemented with 25 ng/ml IL2 for primary human NK cells, or 10% RPMI supplemented with 10 ng/ml IL-2 for KHYG-1 and NK-92 cell lines. hNK, KHYG-1 and NK-92 cell lines were pre-stained with CFSE (Sigma), which was able to perpetuate for 6 days as determined by CFSE + population from flow cytometry, following the manufacturer’s protocol for all co-culture setups except for those used for cytotoxicity assay against model target cell line, K562.
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8

Fluorescent Labeling of Neobenedenia Oncomiracidia

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Neobenedenia sp. oncomiracidia were labelled with a fluorescent marker to identify individual parasites on the fish body surface. A 10 mM stock solution of the fluorescent dye 5(6)-carboxyfluorescein diacetate N-succinimidyl ester (CFSE; Sigma–Aldrich, Castle Hill, NSW, Australia) was made by resuspending CFSE lyophilised powder in 100% dimethyl sulphoxide (DMSO), and stored at 4 °C in dark conditions until use. The stock solution was diluted with filtered sea water (35 ppt) to produce a 30 nM working solution of CFSE for labelling (modified from Glennon et al., 2007 (link)). Approximately 400 Neobenedenia sp. oncomiracidia were held for 15 min in dark conditions in a 50 mL beaker with 25 mL of sea water (35 ppt) and 5 mL of 30 nM CFSE working solution. Only swimming oncomiracidia were selected for the experiments.
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9

CFSE-based Proliferation Assay of Antigen-specific T Cells

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The hMDM were stained, using CFSE (Sigma, C1157), modified from protocols described previously.65 (link) Briefly hMDM were incubated with CFSE (1 to 5 μM) followed by incubation at 37°C for 10 min. After washing with CM, cells were resuspended and seeded in 1.5 ml eppendorf tubes at 0.4 × 106 (link)/ml. The hMDM were infected with Lm parasites (MOI = 10). After 24 h incubation, 37°C, 5%CO2, extracellular parasites were removed by washing and hMDM were put in new 1.5 ml microcentrifuge tubes or in 96-well, round bottom plates. Autologous PBMCs were thawed and similarly labeled with CFSE. The PBMCs were coincubated with the (un)infected hMDM, at a ratio of 1:5. After 6 d of culture at 37°C, 5% CO2, cells were collected and proliferation (CFSElow cells) was analyzed by flow cytometry.
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10

Evaluating CTL-mediated Target Cell Killing

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B cells (0.025×106) were pulsed with 2 μg/mL SAgs for 1 h in serum-free AIMV medium. Unpulsed B cells were used as negative control. CTLs collected at day 7 were stained with 1.5 μM carboxyfluorescein diacetate succinimidyl ester (CFSE; Thermo Fisher Scientific, #C34554) for 8 min at room temperature in PBS and then added to B cells at 1:10 B cell:CTL ratio in 50 μL AIMV (Gibco, #12055-091) medium and incubated at 37°C for 4 h to evaluate target cell killing. When required, 5 μg/mL anti-PD-L1 neutralizing mAbs were added to the medium during conjugate formation. Cells were then diluted to 200 μL with cold PBS and acquired using a GUAVA flow cytometer. Propidium iodide (PI, Sigma, #537059) was added before each acquisition to the final concentration of 20 μg/mL. Cytotoxicity (% target cell lysis) was calculated as follows: CFSEPI+ cells–CFSEPI+ cells in control sample) × 100.
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