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14 protocols using glucose 6 phosphate dehydrogenase g6pdh

1

Quantitative Determination of DNJ, FGM, and DAB

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DNJ (purity >98.0%) and SZ–A (lot number: 20130717-2), containing 37.5% of DNJ, 6.4% of FGM, and 4.8% of DAB, was kindly provided by the Department of Pharmaceutics (Institute of Materia Medica, Chinese Academy of Medical Sciences, Beijing, China). Miglitol (internal standard, IS) was purchased from J and K Scientific Ltd., (Beijing, China). FGM (purity >98.0%) was obtained from Medchem Express Co., Ltd., (Princeton, NJ, USA). DAB∙HCl (purity >98.0%), propranolol, atenolol, β-nicotinamide adenine dinucleotide phosphate (β-NADP) hydrate, d-glucose 6-phosphate (G-6-P) disodium salt hydrate, glucose-6-phosphate dehydrogenase (G-6-PDH), and ammonium hydroxide solution were products of Sigma-Aldrich Co., Ltd., (St. Louis, MO, USA). Tris(hydroxymethyl)aminomethane (Tris) was obtained from Sinopharm Chemical Reagent Co., Ltd., (Beijing, China). Anaerobic medium was purchased from Beijing Land Bridge Technology Co., Ltd., (Beijing, China). Acetonitrile and methanol were of HPLC grade (Merck KGaA, Darmstadt, Germany). Ultrapure water was prepared by a Milli-Q Reagent water system (Millipore, Billerica, MA, USA). All other chemicals were of analytical reagent grade and commercially available.
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2

Synthesis and Characterization of Bile Acid Derivatives

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UniPR129 (N-(3α-hydroxy-5β-cholan-24-oyl)-L-β-homotryptophan), UniPR500 (N-(3-hydroxyimino-cholan-24-oyl)-L-β-homotryptophan), UniPR126, and UniPR141, employed as internal standards, were synthesized in our labs as previously described [8 (link),9 (link),11 (link)]. Mouse liver (MLM, from CD1 mice, pooled male) microsomes for phase I metabolism and human (pooled male and female) liver S9 fraction (HLS9) and mouse liver S9 fraction (MLS9 from CD1 mice, pooled male) for phase II metabolism were obtained from Xenotech, LLC (Cambridge, Kansas City, KS, USA). Glucose-6-phosphate (G6P), oxidized nicotinamide-adenine-dinucleotide phosphate (NADP+), Uridin-di-phosphoglucuronic acid (UDPGA), 3-phosphoadenosin-5-phosphate (PAPS), magnesium chloride (MgCl2), dithiothreitol (DTT), and glucose-6-phosphate-dehydrogenase (G6PDH) were supplied by Sigma Aldrich (Milan, Italy). 85% v/v formic acid was provided by ACEF Spa (Piacenza, Italy); HPLC-grade acetonitrile (ACN) and dimethyl sulfoxide (DMSO), >99.9% purity, were supplied by Sigma Aldrich (Milan, Italy) and VWR Chemicals (Radnor, PE, USA), respectively. Ultra-pure Millipore water (Darmstadt, Germany) was employed for HPLC mobile phase and sample preparations.
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3

Metabolic Activation of Compounds via Aroclor-Induced Rat Liver S9 Mix

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For metabolization experiments, 1254 aroclor induced S9 rat liver extract was used (Moltox, NC, USA) and cofactors nicotinamide adenine dinucleotide phosphate (NADPH), Glucose-6-Phosphate (G6P) and MgCl2 were purchased from Carl Roth (Karlsruhe, GER) and Glucose-6-Phosphate-Dehydrogenase (G6P-DH) from Sigma Aldrich (US). Two different S9 protocols were followed, with different S9 composition depending on the incubation time with the S9 mixture. Final concentration of the compounds in the wells were: 5 mM MgCl2, 3 mM G6P, 0.2 mM NADPH, 0.3 units/mL G6P-DH and 330 µg/mL (3 h protocol) or 10 µg/mL (24 h protocol according to Mollergues et al. (2016) ) of S9 liver extract. Cells were either treated for 3 h with a higher concentrated S9 mix, then washed with Dulbecco’s phosphate buffered saline (DPBS) and further incubated with DMEM containing 5% FBS and 1% DMSO for another 21 h. Alternatively, treatment was done for 24 h with a lower concentrated mix, without a change of medium. Luciferase and resazurin measurements were conducted the same way as without S9 addition. The 1254 aroclor induced S9 rat liver extract was used simultaneously in the same laboratory for the Ames MPF™ assay to prove its functionality.
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4

Profiling Human Liver Microsomal Metabolism

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Pooled human liver microsomes (n = 20) were obtained from Corning Gentest Corporation (Woburn, MA, USA) and stored at −150 °C until use. All the experimental procedures involving humans have been carried out in accordance with The Code of Ethics of the World Medical Association (Declaration of Helsinki) guidelines. Phenacetin, bupropion, tolbutamide, dextromethorphan, midazolam, 3-acetamidophenol (internal standard), chlorpropamide (internal standard), glucose 6-phosphate (G6P), glucose 6-phosphate dehydrogenase (G6PDH), β-nicotinamide adenine dinucleotide phosphate (NADP) and tris (hydroxymethyl) aminomethane hydrochloride (Tris-HCl) were purchased from Sigma Chemical Co. (St. Louis, MO, USA). Chlorzoxazone was purchased from Alfa Aesar (Massachusetts, USA). 4-acetamidophenol, hydroxybupropion, 4-hydroxytolbutamide, dextrorphan, 6-hydroxychlorzoxazone and 1-hydroxymidazolam were obtained from Toronto Research Chemical (North York, Canada). Mebendazole (internal standard) was obtained from Aladdin Industrial Co. (California, USA). Plumbagin (purity > 98%) was purchased from Dalian Meilun Biotech Co., Ltd (Dalian, China). Acetonitrile and methanol (all HPLC grade) were purchased from Fisher Chemicals (Leicester, UK). Formic acid (HPLC grade) was purchased from TEDIA (Ohio, USA). Distilled water was purified in a Millipore system Milli Q (Millipore Corp., Bedford, MA, USA).
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5

Yeast Protein Immunoblotting Reagents

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The following antibodies were from Sigma-Aldrich: glucose-6-phosphate dehydrogenase (G6PDH), HA-peroxidase, and FLAG M2. Antibodies for ubiquitin (P4D1) and VCP/Cdc48 were from Cell Signaling Technology. The antibody for Por1 was from Thermo Fisher Scientific. The GFP antibody was obtained from CWbio.
Yeast extract, peptone, and yeast nitrogen base without amino acids were purchased from BD. Yeast complete supplement mixture was purchased from MP Biomedicals. Yeast amino acid dropout supplements were obtained from Takara Bio Inc. CHX was obtained from Amresco. MG132 was from EMD Millipore. Other chemicals or reagents were obtained from Sigma-Aldrich if not otherwise indicated.
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6

Pyridazinone Compounds Characterization

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Pyridazinones: YWS01125 (purity of 98.83%) was supplied by the Institute of Materia Medica, Shandong Academy of Medical Sciences (Jinan, China); MGL-3196 (internal standard, IS) was purchased from Selleck Corporation (Beijing, China). The structural equations of the two compounds are shown in Figure 1. Nicotinamide adenine dinucleotide sodium phosphate (NADP), glucose-6-phosphate disodium salt (G-6-P), and glucose-6-phosphate dehydrogenase (G-6-PDH) were purchased from Sigma (Sigma, Germany). The reagent was purchased from Sigma Company (St. Louis, MO) and was chromatographically pure. The rat and human liver microsomes were purchased from Red Company (Shanghai, China). HPLC-grade methanol was supplied by Thermo Fisher Scientific Co. Ltd. (Shanghai, China); HPLC-grade acetonitrile was offered by Thermo Fisher Scientific Co. Ltd. (Shanghai, China); HPLC-grade formic acid was provided by Tianjin Kermel Chemical Reagent Co. Ltd. (Tianjin, China); purified water used for the all analysis was employed by Wahaha Co. Ltd. (Hangzhou, China).
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7

Hepatic Metabolism of 25(R)-PPD Derivatives

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25(R)-OCH3-PPD and 25(R)-OH-PPD (99.0% pure) were supplied by Shenyang Pharmaceutical University (Liaoning, P. R. China). Pooled human liver microsomes (HLM), male cynomolgus monkey liver microsomes (CyLM), male beagles [dog liver microsomes (DLM)], male Sprague-Dawley rats [rat liver microsomes (RLM)], and male CD-1 mice [mouse liver microsomes (MLM)], as well as recombinant P450 enzymes CYP3A4 were purchased from Research Institute for Liver Diseases (Shanghai) Co., Ltd. (Shanghai, China). NADPH, NAD+, glucose-6-phosphate (G-6-P) and glucose-6-phosphate dehydrogenase (G-6-PDH) were purchased from Sigma-Aldrich (St.Louis, MO). All solvents used for high-performance liquid chromatography (HPLC) were of HPLC grade (Merck, Darmstadt, Germany). Chemical inhibitors, ketoconazole (Ket), α-naphthoflavone (Naph), sulfaphenazole (Sul), quercetin (Que), quinidine (Qui),diethyl dithiocarbamate (DDC) and ticlopidine (TP) (purity >99%) were purchased from Sigma-Aldrich (Shanghai, China). Purified water was generated with a Milli-Q Gradient system (Millipore Corporation, Molsheim, France).
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8

Comprehensive Biochemical Assay Protocol

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1-Octanol, hydrogen peroxide, magnesium chloride,
acetic acid, phosphoric acid, triethylamine, propranolol, atenolol,
dimethyl sulfoxide (DMSO), d-glucose 6-phosphate sodium salt,
nonessential amino acids (NEAA), glucose-6-phosphate dehydrogenase
(G-6-PDH), β-nicotinamide adenine dinucleotide phosphate sodium
salt (NADP+), verapamil, MK-571, testosterone, sodium phosphate
monobasic monohydrate, sodium phosphate dibasic, Pd(PPh3)2Cl2, CuI, PPh3, i-Pr2NH, toluene, and ethynylbenzene were purchased from Sigma (St. Louis,
MO). Sodium pyruvate, Hank’s Balanced Salt Solution (HBSS),
and Phosphate-Buffered Saline (PBS) were from Cellgro (Manassas, VA).
Hepes, glutamine, fetal bovine serum (FBS), and penicillin/streptomycin
were from Invitrogen (St. Louis, MO). NaCl, NH4Cl, CH2Cl2, sodium sulfate, formalin, hydrochloric acid,
paraffin phosphate buffer, HPLC grade-acetonitrile, ethyl acetate,
ethanol, and methanol were from Fisher Scienfitic Co. (Pittsburgh,
PA). Polyethylene glycol 400 (PEG) was from Hampton (Aliso Viejo,
CA).
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9

In-Vitro Metabolism of Tanshinones

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Dihydrotanshinone I (purity > 97%), tanshinone I (purity > 98%), tanshinone IIA (purity > 98%), cryptotanshinone (purity > 98%), danshensu (purity > 99%), salvianolic acid A (purity > 99%), salvianolic acid B (purity > 99%), salvianolic acid C (purity > 98%), and rivaroxaban (purity > 99%) were purchased from TaoSu Biochemical Technology Co. Ltd. (Shanghai, China). Tris (hydroxymethyl) aminomethane hydrochloride (Tris-HCl), β-nicotinamide adenine dinucleotide phosphate (NADP), glucose 6-phosphate dehydrogenase (G6PDH), glucose 6-phosphate (G6P), phenacetin, bupropion, tolbutamide, dextromethorphan, chlorzoxazone, astemizole, and midazolam were purchased from Sigma Chemical Co. (St. Louis, MO, United States). Mebendazole (internal standard) was obtained from Aladdin Industrial Co. (California, United States). Danshen tablet was purchased from Shanghai Lei Yun Shang Pharmacy Co., Ltd. (Shanghai, China). Pooled rat liver microsomes (RLM) and human liver microsomes (HLM, n = 25) were obtained from the Research Institute for Liver Diseases Co., Ltd. (Shanghai, China) and stored at −80°C until use. Methanol and acetonitrile (HPLC grade) were purchased from Fisher Chemicals (Leicester, United Kingdom). Formic acid and ammonium formate (HPLC grade) were purchased from TEDIA Company, Inc. (Ohio, United States).
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10

Kynurenine Pathway Metabolite Analysis

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Kynurenine (L-KYN), 3-hydroxykynurenine (3-HK), NADPH, glucose-6-phosphate (G6P), and glucose 6-phosphate dehydrogenase (G6PDH) were obtained from Sigma-Aldrich (St. Louis, MO, USA). Cyto-Fast Fix/Perm solution was obtained from BioLegend (San Diego, CA, USA). All other chemicals were of the highest commercially available purity. All solutions were prepared using deionized water obtained from a Milli-RQ (Millipore; Burlington, MA, USA) purifier system.
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