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36 protocols using ovalbumin (ova)

1

SDS-PAGE Protein Separation and Visualization

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Total egg extract and proteolytic products were mixed with an equal volume of 2x sample buffer (62 mM Tris, 50 mM DTT, 0.2% SDS, 10% glycerol, and 0.01% bromophenol blue). Proteins were resolved by SDS-PAGE using a 12% gel [35 (link)] and visualised by staining with 0.2% Coomassie Brilliant Blue R250 (w/v) dissolved in ethanol, acetic acid, and water (45:10:45, v/v/v) (Bio-Rad Laboratories, Brazil), and the molecular masses were estimated using the following protein standards: phosphorylase B (101.4 kDa), bovine serum albumin (87.5 kDa), ovalbumin (52.7 kDa), carbonic anhydrase (35.8 kDa), soybean trypsin inhibitor (22.8 kDa), and lysozyme (18.8 kDa) (Bio-Rad Laboratories, USA).
Total ovary extracts were resolved using 8% SDS-PAGE [35 (link)] by the same process described above, and molecular masses were estimated using the following protein standards: myosin (202.8 kDa), β-galactosidase (115.5 kDa), bovine serum albumin (98.2 kDa), ovalbumin (51.4 kDa) (Bio-Rad Laboratories, USA).
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2

Molecular Mass Determination of Enzymes

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SDS–PAGE (Laemmli, 1970 (link)) was used to determine the subunit molecular mass of the enzymes. Myosin (200 kDa), β-galactosidase (116.3 kDa), phosphorylase B (97.4 kDa), serum albumin (66.2 kDa), ovalbumin (45 kDa), carbonic anhydrase (31 kDa), trypsin inhibitor (21.5 kDa), lysozyme (14.4 kDa), and aprotinin (6.5 kDa) were used as molecular mass standards (Bio-Rad, Tokyo). The native molecular mass of PH0782 was determined using gel filtration chromatography with a HiLoad 26/60 Superdex 200 column (GE Healthcare, Tokyo). Thyroglobulin (670 kDa), γ-globulin (158 kDa), ovalbumin (44 kDa), and Myoglobin (17 kDa) were used as molecular mass standards (Bio-Rad).
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3

ELISA Quantification of Antibody Response

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Antibodies against OVA were detected using ELISA plates (Maxisorp; Nunc) coated for 1 h at room temperature with 100 μL/well of 20 μg/mL OVA (Sigma-Aldrich, Saint Louis, MO, USA) in 0.1 M carbonate buffer (pH 9.6). Serial dilutions of sera from inoculated sheep were added to the plates and incubated for 1 h at room temperature, after blocking with blocking buffer (PBS with 0,05% (vol/vol) Tween-20 and 4% (wt/vol) skimmed milk) for 1 h at room temperature and washing five times with 1% (vol/vol) Tween-20 in PBS. The presence of OVA-specific IgG or IgM was detected using a secondary donkey anti-sheep IgG conjugated to HRP (1/2,000; Serotec, Corston Bath, UK) or rabbit anti-sheep IgM also conjugated to HRP (1/20,000; Bethyl, Montgomery, Texas, USA). After washing 10 times with 1% (vol/vol) Tween-20 in PBS, signal was developed using TMB Liquid Substrate System (Sigma-Aldrich, Saint Louis, MO, USA) and the reaction was stopped with 3 M sulfuric acid before reading. OD was determined at 450 nm on a FLUOstar Omega (BMG Labtech, Ortenberg, Germany) ELISA plate reader. All IgG/IgM measurements were made in triplicate, and assays were only considered valid when SDs were below 10% of the average. IgG/IgM binding to OVA was considered positive only when the OD obtained was at least twice the OD obtained with the preimmune serum from the same sheep.
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4

Murine Model of Allergic Asthma

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WT BALB/c or humanized transgenic mice were OVA-immunized on days 0 and 14 with 20 μg OVA (Sigma, St. Louis, MO, USA) in Imject® Alum (Pierce, Rockford, IL, USA) [21 (link)], i.p.; nonimmunized (sensitized) mice received alum only. Increased serum OVA-specific IgE levels on day 1 versus day 21 were confirmed using ELISA (AbD Serotec, Oxford, UK). Responsive mice (sIgE ≥ 500 ng/ml) were pretreated with control saline or SC-MN (Sigma, prepared for patented use for asthma therapeutic, endotoxin level < 2 EU/ml) 30 min before OVA challenge on days 28, 29, and 30 (100 μg OVA i.n. in 25 μl phosphate-buffered saline (PBS).
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5

Lipase Extraction and Characterization

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P-nitrophenyl laurate (p-NPL), p-nitrophenyl acetate (pNPA), SDS gel electrophoresis markers and reagents, Candida rugosa lipase were purchased from Sigma Aldrich Chemical Co. (St., Louis, USA) and yeast extract and agar from Merck, (Darmstadt, Germany). Bradford reagent and ovalbumin were the commercial product of BioRad (BioRad Laboratories, Hercules CA, USA). All other chemicals were of analytical grade and used without further purification. Bacillus licheniformis isolated from nature was kindly provided by Dr. M. Birbir (Biology Department, Marmara University).
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6

Molecular Mass Estimation of gp16.1

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Cleaved gp16.1 concentrated at 250 µg.mL−1 was applied to a 24 mL analytical column (Superdex 75 (10/300) GE) equilibrated with gel filtration buffer. The column was calibrated with one vial of protein standards mixture containing thyroglobulin (670 kDa), γ-globulin (158 kDa), ovalbumin (44 kDa), myoglobin (17 kDa) and vitamin B12 (1.35 kDa) (Bio-Rad) (Supplementary Fig. 1b) resuspended in 500 μl of gel filtration buffer. The column void volume (V0) and the total volume (Vt) were determined using the elution volumes of blue dextran 2000 and acetone, respectively. The molecular mass of native gp16.1 was estimated by plotting the partition coefficient Kav against the log of relative molecular mass for the standards. Kav = (Ve − V0)/(Vt − V0), where Ve is the elution volume of the protein under analysis.
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7

Gel Filtration Analysis of NEMO and IKK2 Complexes

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To investigate the degree of self-association, all purified individual NEMO and IKK2 proteins as well as NEMO:IKK2 complexes were subjected to gel filtration with a Superose6 Increase10/300 GL size-exclusion column (GE Healthcare) on an NGC™ Liquid Chromatography System (Bio-Rad). In general, equimolar concentrations of recombinant IKK2 and NEMO proteins were used during complex formation. NEMO:IKK2 complexes prepared at 2:1 molar excess of either subunit were indistinguishable from complexes purified after combining equimolar amounts. The column was equilibrated in a buffer with 25 mM Tris-HCl, pH 8.0, 250 mM NaCl, 2 mM DTT, and 5% glycerol at a flow rate of 0.2 mL/min at 22 °C. Molecular weight standards used are as follows: thyroglobulin, 670 kDa; gamma-globulin, 158 kDa; ovalbumin, 44 kDa; myoglobin, 17 kDa; vitamin B12, 1.4 kDa (Bio-Rad). The calibration standard data fit to the function:
Apparent Molecular Weight(VE) = 0.0101VE2 + 00307VE + 3.6298
where VE is the measured elution volume of the protein. Peak fractions were analyzed by SDS-PAGE.
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8

Electrophoresis Analysis of CoaPLA2

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Electrophoresis analysis was performed to evaluate the purity and estimate molecular mass of CoaPLA2, under reducing and nonreducing conditions. The standard molecular weight proteins were purchased from BioRad Co. (Phosphorylase b—97,400; Serum albumin—66,200; Ovalbumin—45,000; Carbonic anhydrase—30,000; Trypsin inhibitor—20,100; Lysozyme—14,400 MW). CoaPLA2 pI was determined by isoelectric focusing, according to a previously described method [24 (link)–26 (link)].
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9

Purification of Secreted Mouse PRAP1 Protein

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The coding sequence for the secreted form of mouse PRAP1 protein (AA 21–149) was cloned into a pET28a vector with a hexahistadine tag (6xHis) tag on the N terminus of the protein generating pET28a-6xHis-PRAP1. This plasmid was transformed into Escherichia coli and expression of PRAP1 was induced using 1 mol/L isopropyl β-d-1-thiogalactopyranoside at 30°C for 4 hours. E coli was lysed using 6 mol/L guanidine and solubilized with 10 mol/L urea. 6xHis-PRAP1 protein was purified using nickel-nitrilotriacetic acid (Ni-NTA) agarose and the buffer was exchanged using phosphate-buffered saline (PBS). For further purification and analysis, PRAP1 protein was loaded onto a size-exclusion chromatography column S200 10/300 at 0.5 mL/min and equilibrated in PBS. The S200 10/300 column was calibrated with a molecular weight standard containing thyroglobulin (670,000 daltons), γ-globulin (158,000 daltons), ovalbumin (44,000 daltons), myoglobin (17,000 daltons), and vitamin B12 (1350 daltons) (Bio-Rad, Hercules, CA) (Figure 1C).
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10

Size-Exclusion Chromatography of EphA4 Proteins

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The triple mutant and wild type EphA4 Fc proteins were injected onto a TSK-GEL SWXL guard column (6.0 mm ID × 400 mm, 7-μm particles) and subsequently eluted onto a TSK-GEL G3000SWXL HPLC column (7.8 mm ID × 300 mm, 5-μm particles) using an Agilent 1200 chromatography system. The flow rate was 0.8 ml/min and the mobile phase contained 100 mM sodium phosphate (pH 6.8) and 200 mM NaCl. Eluted proteins were monitored by UV absorption (280 nm wavelength). The following standards were used: thyroglobin (670 kDa), bovine γ-globin (158 kDa), ovalbumin (44 kDa), equine myoglobin (17 kDa), and vitamin B12 (1.35 kDa) (BioRad Laboratories, Hercules, CA, USA).
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