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21 protocols using api 3000

1

Screening Compounds via Mass Spectrometry

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Samples were screened for 86 compounds (see supplemental data for complete list) using an Applied Biosystems API 3000 triple quadrupole mass spectrometer with electrospray ionization (Foster City, CA, USA) in multiple reaction monitoring (MRM) mode as previously described [15 (link),16 (link)]. An injection volume of 20μL from each sample was used.
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2

HPLC-MS/MS Analysis of Compounds

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An HPLC instrument equipped with a UV/Vis detector series 200 (Perkin Elmer, Shellton, CT, USA) was used for analysis; the wavelength for detection was 280 nm. A column Prodigy ODS3, 250 mm × 4.6 mm, particle size 5 µ, (Phenomenex, Torrance, CA, USA) was used for separation of compounds. Chromatographic conditions: flow = 0.8 mL/min; the program for gradient elution was the following: time 0 = 20% B; time 6 min = 20% B; time 16 min = 40% B; time 24 min = 50% B; time 32 min = 90% B; time 35 min = 90% B; time 38 min = 20%; split flow was 1:4; injection volume was 20 µL. An API 3000 (Applied Biosystems, Foster City, CA, USA) triple quadrupole mass spectrometer equipped with a Turbo Ion Spray source was used in the negative ion mode. Each sample was injected three times for the reproducibility.
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3

Mass Spectroscopy Procedure for Resuspended Samples

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Example 10

Mass Spectroscopy

Samples were resuspended in carrier solution (50% water, 50% methanol and 0.01% formic acid). Mass spectroscopy was performed using a high-performance, hybrid quadrupole time-of-flight mass spectrometer—QSTAR® XL Hybrid LC/MS/MS System (Applied Bio systems, Foster City, Calif., USA)—in positive ion mode, at room temperature, with an IonSpray source for API 150EX™, API 3000™ and QSTAR® Systems (Applied Biosystems). Data were analyzed using Analyst QS version 1.1.

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4

Identifying Pharmaceutical Metabolites in Earthworms

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To ascertain whether the radioactivity
measured in the earthworm samples was that of the parent compound
or metabolite/transformation products, additional studies were performed
using nonlabeled carbamazepine, diclofenac, and fluoxetine. Studies
were performed at 20 times the soil concentration in the radioactive
studies. This concentration difference was used to ensure that compounds
were detectable in the earthworm tissue. While it is possible that
changes in concentration can affect uptake, our previous studies indicate
that differences of this magnitude have no significant effect on uptake
kinetics of APIs.10 (link) Extracts were analyzed
by liquid chromatography–tandem mass spectrometry (LC-MS/MS)
using a Dionex Ultimate 3000 and Applied Biosystems API 3000. Where
necessary (e.g., diclofenac), extracts were further analyzed by liquid
chromatography–Fourier transform mass spectrometry (LC-FTMS)
(solariX 9.4T Bruker) to determine if known transformation products
were present in the samples. Due to analytical limitations, studies
to ascertain whether metabolism of orlistat had occurred in E. fetida could not be performed (see the Supporting Information for further details on
LC-MS/MS and LC-FTMS methodology).
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5

Quantifying Cannabinoid Levels in Serum

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To validate that there was a dose-dependent change in CBD levels, serum levels of cannabinoids were analyzed [22 (link)]. In brief, methanolic extracts of 90 µl of serum were partially purified on C18 solid phase extraction columns (Zorbax) and eluants were analyzed using HPLC/MS/MS (API 3000, Applied Biosystems). Deuterium-labeled anandamide elutes in the same fraction as CBD and was used as an internal standard to monitor recovery. Levels of CBD and THC were analyzed using standard curves with Analyst Software as previously described [22 (link)]. During analysis it was discovered that each of the samples contained a small fraction THC in addition to CBD. This can occur during synthesis and is often unknown if the levels are not analyzed. The plasma ratio in each dose was ca 25:1 CBD:THC (Additional file 1: Figure S3B).
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6

Analytical Characterization of Novel Compounds

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Most of the chemicals and reagents used in the investigation came from Merck Chemicals in Bangalore, India. Compound melting points measured with the Hicon melting point device (New Delhi, India) were found to be inaccurate and to have exposed capillary tubes. Thin-layer chromatography (TLC) plates fixed with silica gel G were employed to assess how pure the newly produced chemicals were. As a detection toolkit, UV light and iodine fumes were employed. A Fourier-transform infrared spectroscopy (FT-IR) spectrophotometer from Shimadzu was utilized to get the FT-IR spectra. DRX400 series of Nuclear Magnetic Resonance (NMR) spectrometer (Bruker, US) was used to acquire the IH spectra (at 400 MHz) and 13C spectra (at 100 MHz). Tetrmethylsilane (TMS) was used as a comparative internal standard, and chemical changes (δ) are expressed in parts per million (ppm), while J values (coupling constants) are expressed in hertz (Hz). The mass of the developed chemical was measured using a mass spectrometer (Applied Biosystems; API-3000), and the result is given in daltons. C, H, and N elemental analysis of synthetic derivatives was performed using a Perkin-Elmer (240C analyzer) (PerkinElmer, US).
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7

Quantitative Analysis of Tartaric Acid

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After filtration, tartaric acid was analyzed using an Atlantis TE C18, 100 mm × 2.1 mm, 3 µm (Waters, Milford, MA, USA) reversed-phase column coupled for detection to the triple quadrupole mass spectrometer API 3000 (Applied Biosystems, Foster City, CA, USA). The mass spectrometer was operated in negative electrospray ionization mode. The column was maintained at 25 °C throughout the analysis. Mobile phases A and B were 0.5% formic acid in water and 0.5% formic acid in acetonitrile, respectively. The following linear gradient was used: holding at 100%A for 3.5 min, decrease to 10%A over 2 min and holding for 2 min, return to initial conditions for 1.5 min, and re-equilibration for 6 min. The flow rate was set at 350 µL/min and the injection volume was 10 µL. Post-column addition of acetonitrile (250 µL/min) was carried out to improve analyte ionization efficiency. The detection was accomplished in multiple reaction monitoring (MRM) mode, and the following MS/MS transitions were used for quantification and confirmation, respectively: m/z 149/87 and m/z 149/73 for tartaric acid, and m/z 151/88 and m/z 151/74 for the deuterated isotope.
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8

Mass Spectrometry Protocol for Metabolite Analysis

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Example 10

Samples were resuspended in carrier solution (50% water, 50% methanol and 0.01% formic acid). Mass spectroscopy was performed using a high-performance, hybrid quadrupole time-of-flight mass spectrometer—QSTAR® XL Hybrid LC/MS/MS System (Applied Bio systems, Foster City, Calif., USA)—in positive ion mode, at room temperature, with an IonSpray source for API 150EX™, API 3000™ and QSTAR® Systems (Applied Biosystems). Data were analyzed using Analyst QS version 1.1.

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9

Erinacine S Quantification by LC-MS/MS

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Erinacine S concentration in the samples were analyzed using Agilent 1100 series LC system equipped with a G1376A capillary pump and a G1313A autosampler, according to a previous published method [16 (link)]. Chromatographic separation was performed on an Agilent Eclipse XDB-C18 column (3.5 µm, 4.6 × 100 mm), using a mobile phase consisting of water (A) and acetonitrile (B), at a flow rate of 0.35 mL/min. The injection volume was 10 μL and the gradient elution program was as follows—0 min, 70% B; 0–5 min, 70–100% B; 5–8 min, 100% B; 8–8.1 min, 100–70% B; and 8.1–11 min 70% B. Mass spectrometric detection was carried out on a triple quadrupole mass spectrometer (API 3000; Applied Biosystems, Vaughan, Ontario, Canada), using Turbo Ion spray as source, coupled with electro spray ionization interfaces, operating in a negative ion mode and ion spray voltage at −4500 V. The source turbo spray consisted of a nebulizer gas at 10 psi, collision gas at 2 psi, curtain gas at 7 psi, with a source temperature at 275 °C. Multiple reaction monitoring (MRM) mode was employed for the quantification—m/z 429.3 → 411.3 for Erinacine S (rt = 8.7 min), and m/z 121 → 91.9 for 4-hydroxybenzaldehyde (internal standard). Data processing was performed with the Analyst 1.4.2 software (Applied Biosystems, Concord, ON, Canada).
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10

Acylcarnitine Quantification in DBS and Serum

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Acylcarnitine (AC) in DBS or serum was analyzed using MS/MS (API-3000; Applied Biosystems, Foster City, CA, USA) after butyl-derivatization of the samples as previously described [20 ,21 (link)]. Briefly, methanol (200 μL) containing an isotopically labeled internal standard (Kit NSK-A/B, Cambridge Isotope Laboratories, Cambridge, UK) was added to one disc of a DBS (3.1 mm in diameter) or 10 μL of serum, and the mixture was incubated for 30 min; 150 μL of the supernatant after centrifugation were butylated with 50 μL of 3 N n-butanol–HCl. The sample was dissolved in 100 μL of 80% acetonitrile, and the concentrations of ACs were quantified by MS/MS.
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