The largest database of trusted experimental protocols

56 protocols using nanoscope 5

1

Sup35NM Fibril Visualization Techniques

Check if the same lab product or an alternative is used in the 5 most similar protocols
For fibrils visualization, Jeol JEM-2100 transmission electron microscope and Bruker Nanoscope V atomic force microscope were used. The negative staining with a 1% aqueous solution of uranyl acetate was used for TEM measurements. Samples were prepared by applying 5 μl of the Sup35NM fibril solution with concentration 0.5 mg/ml on a substrate, followed by washing with distilled water and drying. The fibrils were immobilized on freshly-cleaved mica surface for AFM analysis and formvar coated copper grids for TEM measurements (Sokolov et al., 2018 (link)).
+ Open protocol
+ Expand
2

Visualizing TDP-43 Protein Aggregates by AFM

Check if the same lab product or an alternative is used in the 5 most similar protocols
Morphology of amyloid aggregates can be analyzed by AFM13 (link)63 (link). Morphologies of TDP-432C protein aggregates were visualized by Nanoscope V scanning probe microscope (Bruker Instruments). Aliquot (5 μl) of pre-formed aggregates of TDP-432C obtained using the method described above were diluted five-fold in the same buffer and deposited on a freshly cleaved mica sheet and incubated for 15–30 minutes for adsorption. The samples were washed several times with deionized water and excess water removed from sides by Whatman filter paper. The mica sheets were left to air-dry at RT for 30 minutes and were imaged in tapping mode using OTESPA silicon cantilever with an aluminium reflective coating on the backside (Bruker AFM probes) with a spring constant of 42 N/m and tip radius ∼7 nm. Imaging was carried out in height mode with a scan rate of 1 Hz. Images were analysed for TDP-432C aggregate’s height and length using the software WSxM64 (link).
+ Open protocol
+ Expand
3

Characterization of Thin Film Composition

Check if the same lab product or an alternative is used in the 5 most similar protocols
The crystalline phases of the fabricated thin films on glass were
characterized by X-ray diffraction (XRD) analysis using an Ultima
IV (Rigaku) with Cu Kα radiation. For XRD analysis, the deposition
amount was maintained in the range of approximately 50–100
μg cm–2 to maximize the diffraction intensity.
Inductively coupled plasma-atomic emission spectrometry (ICP-AES)
by a PS3520VDDII (Hitachi High-Tech Science) instrument was used to
estimate the material mass loading of the fabricated thin films. The
samples were deposited on Si substrates (cleaved to a size of ∼4
cm2) under the aforementioned conditions. The actual geometrical
surface area of the Si substrate was determined by image analysis
using ImageJ.25 (link) The samples were completely
dissolved in dilute nitric acid and hydrogen peroxide before ICP-AES
measurements. Field-emission scanning electron microscopy (S5500;
HITACHI High-Tech) was used to examine the morphology and thickness
of the fabricated thin films. The film surfaces were examined by atomic
force microscopy (AFM) in the tapping mode using a Nanoscope V (Bruker)
instrument; AFM data were analyzed using the Gwyddion software.
+ Open protocol
+ Expand
4

Atomic Force Microscopy Imaging

Check if the same lab product or an alternative is used in the 5 most similar protocols
Atomic force micrographs were recorded using a Bruker NanoScope V instrument operated in the ScanAsyst tapping mode.
+ Open protocol
+ Expand
5

Measuring Molecular Conductance via STM-BJ

Check if the same lab product or an alternative is used in the 5 most similar protocols
Molecular conductance was measured using the STM-BJ technique on a Nanoscope V (Bruker, Santa Barbara, CA, USA) running a custom-made dataflow program. Scanners featuring 10 nA V−1 preamplifiers were used throughout. The tunnelling current (I) is measured between a gold tip and a gold-on-mica substrate while they are repeatedly brought into and out of contact (23.3 nm s−1) at a constant voltage bias of 100 mV. In the absence of molecules bridging the tip–substrate gap an exponential current decay is recorded. On the contrary, if a molecule gets suspended between tip and substrate a characteristic region of constant current (plateau) is observed. Current values are transformed into conductance (G=I/V) and referenced to the conductance quantum (G0=2e2/h=77,481 nS). The Au(111) substrates were prepared by means of thermal deposition at 625–675 K under vacuum, and flame annealed before use. Tips were prepared by mechanical cutting of commercially available Au wire (>99%, ø–0.3 mm). Molecular adsorption was achieved by casting a small aliquot (∼20 μl) of 0.1 mM CH2Cl2 solutions of the target molecules on freshly annealed substrates. Conductance measurements were performed before and after molecular deposition. Measurements were repeated until a statistically significant data set was obtained.
+ Open protocol
+ Expand
6

PFM Measurements of PO Flakes on Gold

Check if the same lab product or an alternative is used in the 5 most similar protocols
PFM measurements were performed on PO flakes
electrosprayed onto silicon substrates, previously coated with 40
nm of gold. A Bruker Dimension Icon system equipped with a Nanoscope
V controller was employed as the SPM system. Measurements were carried
out in peak force mode, using a platinum–iridium-coated tip
with a nominal radius of 20 nm and an elastic constant of 2.8 N/m.
+ Open protocol
+ Expand
7

Atomic Force Microscopy of Microtubules and Tau

Check if the same lab product or an alternative is used in the 5 most similar protocols
Samples containing microtubules and tau under specified conditions were deposited on freshly cleaved mica and dried for atomic force microscopy (AFM) imaging, using a protocol that we developed [67 (link)]. The electrostatic adsorption of microtubules on mica is mediated by magnesium ions present in the buffer. All AFM experiments were performed in peak force mode with Nanoscope V (Bruker/Veeco, Santa Barbara, CA). The peak force tapping mode was performed using silicon tips (Scanasyst-Air-HR, Bruker). The applied force was minimized as much as possible.
+ Open protocol
+ Expand
8

Characterizing Surface Topography with Atomic Force Microscopy

Check if the same lab product or an alternative is used in the 5 most similar protocols
Atomic Force Microscopy (AFM) technique was chosen to measure the surface topography. Due to the soft nature of our samples, we measured in tapping mode using an AFM Multimode 8 (Bruker®, Karlsruhe, Germany) system with the controller Nanoscope V (Bruker®) and the software Nanoscope Analysis 1.50 (Bruker®) for image analysis. The tips were silicon NSG30 (NT-MDT®) with a curvature radius of ~6 nm, a nominal resonant frequency of 320 kHz and a typical spring constant of 40 N/m.
+ Open protocol
+ Expand
9

Comprehensive Membrane Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
The surface chemical composition of membranes was measured using attenuated total reflectance-Fourier transform infrared (ATR-FTIR) spectroscopy (Perkin Elmer Spectrum 100 FTIR Spectrometer, Waltham, MA, USA) and X-ray photoelectron spectroscopy (XPS, VG K-alpha ThermoFisher Scientific, Inc., Waltham, MA, USA). Membrane morphology and surface roughness were observed using field emission scanning electron microscopy (FESEM, S-4800, Hitachi Co., Tokyo, Japan) and atomic force microscopy (AFM, NanoScope® V, Bruker, Billerica, MA, USA), respectively. The surface wetting characteristics of the membranes were measured using an automatic interfacial tensiometer (PD-VP Model, Kyowa Interface Science Co., Ltd., Niiza City, Saitama, Japan).
+ Open protocol
+ Expand
10

Atomic Force Microscopy of Adsorbed Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
The sample was deposited on freshly cleaved mica surface (Plano GmbH) and adsorbed for 3 min at room temperature. After washing with ddH2O, the sample was dried under gentle argon flow and scanned in ScanAsyst Mode using a MultiMode microscope (Bruker) equipped with a Nanoscope V controller. Force (0.4 N m−1) constant cantilevers with sharpened pyramidal tips (ScanAsyst-Air tips, Bruker) were used for scanning. After engagement the peak force setpoint was typically 0.02 volt and the scan rates ∼1 Hz. All images were analysed using the Gwyddion software (more details are given in the Supplementary Methods).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!