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5973n mass selective detector

Manufactured by Agilent Technologies
Sourced in United States, Germany, Canada

The 5973N Mass Selective Detector is a laboratory instrument used for the identification and quantification of chemical compounds. It is designed to work in conjunction with gas chromatography systems to provide detailed analysis of complex mixtures. The 5973N Mass Selective Detector utilizes electron ionization and quadrupole mass spectrometry technology to generate and analyze mass spectra of the separated compounds.

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27 protocols using 5973n mass selective detector

1

GC-MS Analysis of Organic Compounds

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Analysis was carried out using a 6890 Series Plus gas chromatograph equipped with an Agilent 7683 autosampler and coupled to a 5973N mass selective detector (Agilent Technologies, Palo Alto, CA, USA). Data were analysed using the standard software supplied by the manufacturer (Agilent Chemstation).
Analytes separation was performed on a fused silica capillary column (ZB-SemiVolatiles, 30 m × 0.25 mm i.d., film thickness 0.25 μm, Phenomenex, Torrance, CA, USA). The oven temperature was programmed at 140 °C for 1 min, increased to 230 °C at 20 °C/min and held for 5 min, then raised to 290 °C at 20 °C/min and held for 20 min. Splitless injection mode was used. Helium (purity 99%), with a flow rate of 1 mL/min was used as carrier gas.
The temperatures of the injection port, ion source, quadrupole and interface were: 260, 230, 150 and 280 °C, respectively. The electron-impact (EI) mass spectra of the compounds were recorded in total ion monitoring mode (scan range 40–550 m/z) to determine retention times and characteristic mass fragments. Then, the instrument was operated in SIM mode. The qualifying ions monitored in SIM mode appear in Table 3; the underlined ions were used for quantification. The ion ratio acceptance criterion was a deviation of ≤20% of the average of ion ratios of all the calibrators.
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2

Quantification of Maternal Cecal SCFAs

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Maternal cecal SCFA levels were quantified as described previously20 (link) with minor modifications, by the McMaster Regional Centre of Mass Spectrometry (MRCMS). Thirty mg of frozen cecal contents was acidified in a weight equivalent volume of 3.7% HCl. Ten μl of internal standards were added to each sample and SCFA extraction was performed by adding 500 μl of diethyl ether to each sample, and the resultant solution was vortexed for 15 minutes. After vortexing, 800 μl of diethyl ether cecal extract was transferred to a clean 1.5 ml centrifuge tube. A 60 μl aliquot of each diethyl ether cecal extract was derivatized with 20 μl of N-tert-butyldimethylsilyl-N-methyltrifluoroacetamide (MTBSTFA; Sigma-Aldrich) in a chromatographic vial containing an insert. The resultant organic extract-MTBSTFA mixture was incubated at ambient temperature for 1 hour and SCFA levels were quantified using a gas chromatograph (Agilent 6890 N GC), coupled to a mass spectrometer detector (Agilent 5973 N Mass Selective Detector).
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3

GC-MS Analysis of Catalytic Reactions

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The catalytic reaction was monitored using an Agilent 6890N Network GS System with a 5973N Mass Selective Detector (Agilent Technologies, Waldbronn, Germany). The parameters of the gas chromatograph were as follows: split/splitless injection at 260 °C, carrier gas helium with a gas flow of 1 mL/min and capillary column Macherey-Nagel (Düren, Germany) Optima-1, with 100% polysiloxane film (0.2 µm thickness) and 12.5 m length, as well as 0.2 mm inner diameter. The transfer line temperature was 280 °C.
The parameters of the mass spectrometer were configured as: electron impact ionization at 230 °C with 70 eV, quadrupole mass filter at 150 °C with a range from m/z 42 to 500, detection by a secondary electron multiplier after 1 min solvent delay.
The following method was developed to separate reactant and products: holding a temperature of 50 °C for 3 min, then heating with 25 °C/min to 110 °C, afterwards heating with 15 °C/min to 155 °C, and subsequently with 25 °C/min to 300 °C. Chromatograms were normalized to the internal standard.
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4

GC-MS Analysis of Compound Identification

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GC-MS analysis was performed using an Agilent GC-MS system (6890N GC system and 5973N mass selective detector, CA, USA) equipped with a HP-5 capillary column (5% diphenyl and 95% dimethyl polysiloxane phase; 0.25 μm film thickness and 30 m × 0.25 mm i.d.). The electron ionization (El) source was operated at 230°C. Helium was used as the carrier gas at a constant flow rate of 0.8 mL/min. The injection volume was 1 μL, and the injection port was maintained at 250°C. The column temperature protocol was 70°C for 2 min with a ramp rate of 3°C/min to 160°C and then 20°C/min to 280°C, where the temperature was maintained for 20 min. The total run time was 58 min. Data were acquired in a full scan mode with m/z range 50–550 using ChemStation software (Hewlett-Packard, Waldbronn, Germany). Computer searches using the NIST Ver. 2.1 MS data library were employed to identify the spectrum of compounds found by the GC-MS results.
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5

GC-MS Quantification of Serum β-Hydroxybutyrate

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Serum (25 μL) samples were deproteinized with cold acetonitrile and the supernatant was dried under nitrogen. β-hydroxybutyrate in the samples was then converted to the TBDMS derivatives at 90°C for 1 hour, separated on a HP-5MS UI column (30 m × 0.25 mm × 0.25 μm; Agilent, CA) and the ion fragments 275.1 through 279.1 monitored by SIM under electron ionization mode using a GC-MS (5973N, Mass Selective Detector coupled to a 6890 Series GC System, Agilent, CA). For experiments where [13C4]β-hydroxybutyrate was infused into the mice, this allowed us to determine the dilution of [13C4] β-hydroxybutyrate in the serum and in turn calculate the turnover rates of β-hydroxybutyrate. For the determination of β-hydroxybutyrate concentrations, serum (25 μL) was spiked with a known amount of [13C4]β-hydroxybutyrate. Concentrations of β-hydroxybutyrate in these samples were quantified by comparison to the [13C4]β-hydroxybutyrate internal standard.
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6

GC-MS Analysis of Organic Compounds

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GC-MS analyses were carried out on an Agilent 6890 Series gas chromatograph equipped with a 5973 N mass selective detector (USA). A programmed temperature vaporization injector operating in the split mode (1:100) at 250 °C and a ZB-5 capillary column (30 m × 0.25 mm i.d. 0.25 μm film thickness; 5% diphenyl, 95% dimethylpolysiloxane; Phenomenex, USA) were used. The increase in the oven temperature was programmed from 80 °C (held for 1 min) to 300 °C (held for 10 min), at a rate of 20 °C/min. Helium was used as carrier gas at constant pressure (9.8 psi) and the injection volume was 1 μL. The transfer line, ion source and quadrupole temperatures were maintained at 280, 230 and 150 °C, respectively, and a solvent delay of 4 min was selected. Electron ionization was performed at 70 eV and the mass spectrometer was operated in the full scan mode in the range 35–550 Da. All results were compared with Wiley’s library reference spectral bank (G1035B; RevD.02.00). Data recording and instrument control were performed by the MSD ChemStation software (G1701 CA; ver.C.00.00; Agilent Technologies, Little Falls, DE, USA.
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7

Quantitative Metabolic Profiling of Broiler Serum and Hepatocytes

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Serum (25 µl) collected from ed18 and nd3 broiler birds were spiked with an equal volume of stable isotope-labelled internal standards and were deproteinized with 700 µl of 70% acetonitrile. The samples were centrifuged at 13,500 rpm for 15 min at 4°C, and the supernatant was transferred to a 1 ml v-vial and dried under a stream of nitrogen gas. The metabolites were then converted to their oximes with the addition of 20 µl of 2% methoxamine hydrochloride in pyridine (W/V) and microwaving at 350 W for 90 s. The samples were then derivatized with TBDMS (Tert-butyldimethylsilyl) at 90°C for 1 h. The metabolites were separated on a HP-5MS UI column (30 m × 0.25 mm × 0.25 μm; Agilent, CA, United States) and the ion fragments determined by single ion monitoring (SIM) under electron ionization mode using a GC-MS (5973N, Mass Selective Detector coupled to a 6890 Series GC System, Agilent, CA, United States). Metabolite concentrations were determined in relation to their respective stable isotope-labelled internal standard. For primary hepatocytes, the cells were collected in 1X RIPA and were deproteinized with 700 µl of 70% acetonitrile. The samples were spiked with a known volume of stable isotope-labeled organic acid and amino acid internal standards and sonicated for 10-min to extract the cellular contents. This extract was processed similar to the serum samples for GC-MS analysis.
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8

Quantitative Analysis of Free MGO

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Free MGO from cell extracts was analyzed on an Agilent 6890 N gas chromatograph equipped with a 7683 Series auto sampler and a 30-m J&W Fisher DB-35 ms capillary column (250-μm I.D. and 0.25 μm film) coupled with a 5973 N mass selective detector (all modules and columns from Agilent Technologies, Waldbronn, Germany). Samples (2 μL) were injected at 250 °C in splitless mode with helium as carrier gas with a flow rate of 1 mL/min. Initial GC oven temperature was set to 50 °C, held for 2 min, then increased at a rate of 15 °C/ min up to 320 °C and held for 10 min. The electron impact ionization source operated at 230 °C, 70 eV and a scan range of m/z 50 to 550. For MGO quantitation, the peak area of m/z 181 of the corresponding derivative was integrated.
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9

GC-MS Analysis of Volatile Compounds

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GC analyses were performed using an Agilent 6850 gas chromatograph oven equipped with a split/splitless injector and a SPME injector liner (0.75 mm ID) and coupled with an Agilent 5973N Mass Selective Detector (MS). The installed capillary column was a Mega-5MS 5% Phenyl Methyl (length 30.0 m, ID 0.25 mm, film thickness: 0.25 µm, MEGA S.r.l., Legnano, Italy).
For SPME analyses, a Supelco DVB/CAR/PDMS fiber assembly, length 1 cm, 50/30 µm film thickness (fused silica 24 Ga, gray) was installed in a manual holder and then used for the extraction of volatiles from samples, which were weighed directly in headspace glass vials (20 mL) and hermetically sealed before equilibration.
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10

GC-MS Analysis of Honeysuckle Seed Oil

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The fatty acid composition in blue honeysuckle seed oil was analyzed using GC–MS. To increase the volatility of the seed oil, pre-column derivatization was used. In a 10 mL screw-cap glass tube, 30 µL of seed oil was dissolved in a mixed solution of n-hexane and benzene (1:1, v/v) and gently shaken. Then, 2 mL of 0.5 mol/L KOH in methanol was added, and the mixture was allowed to stand for 30 min. Subsequently, 5 mL of distilled water was added to separate the organic phase solution (n-hexane), causing it to rise to the upper layer of the tube. The top layer solution was diluted 20 times and analyzed by GC–MS on an Agilent 6890 GC system equipped with a 5973 N mass selective detector (Agilent Technologies Inc., Wilmington, DE, USA) using a DB-5 capillary column (60 m × 0.25 mm id, 0.25 µm film thickness, J&W Scientific, CA, USA). The GC injection port temperature was 250 °C, and helium was used as the carrier gas at a flow rate of 1.0 mL/min. The injection volume was 1.0 µL, and the injection split ratio was 1:10. The oven temperature was started at 180 °C and held for 5 min, and then ramped to 240 °C at 3 °C/min and held for 8 min. The total program time was 32 min. The ion source temperature was 230 °C. The MS detection was operated at 70 eV with a scan range of 50–550 m/z.
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