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Round bottomed 96 well plates

Manufactured by Greiner
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Round-bottomed 96-well plates are a standard laboratory equipment used for various applications in microbiology, biochemistry, and cell culture. These plates provide a convenient and efficient way to perform multiple experiments or assays simultaneously. Each plate has 96 individual wells with a round bottom design, allowing for efficient mixing and sample handling.

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10 protocols using round bottomed 96 well plates

1

PRRSV Infection of Monocyte-derived Dendritic Cells

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After seven days of cultivation, moDCs were seeded into round-bottomed 96-well plates (Greiner Bio-One) at 2 × 105 cells per well and infected with PRRSV-1 or PRRSV-2 strains at an MOI of 0.1 at 37 °C in 5% CO2. After two hours, the inoculum was removed and cells were washed twice with CM. Separate microcultures with mock-infected moDCs were included in each experiment. Cultivation of moDCs was continued until 12, 24 and 48 hours post-inoculation (hpi). At these time points moDCs were harvested and analyzed for PRRSV-N-protein expression (see below for details). In addition, moDCs were infected with different MOI (0.1, 0.02 and 0.004) and harvested after 24 hpi. Harvested moDCs were labelled with anti-CD172a mAbs (see Table 1 for details on staining strategy) and isotype-specific secondary antibodies in combination with Live/Dead® Fixable Near-IR during a second incubation step. Subsequently, moDCs were fixed and permeabilized by the Foxp3/Transcription Factor Staining Buffer Set (eBioscience, San Diego, CA, USA) according to manufacturer’s instructions. Thereafter, cells were incubated with anti-PRRSV-N-protein mAbs (clone P10/b1) [29 (link)]. This antibody had been purified and conjugated to Alexa488 as described elsewhere [30 (link)].
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2

Generating Homogeneous MTT Spheroids

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To generate MTT spheroids, 5 × 103 cells/well in cell-repellent surface, round bottomed 96-well plates (Greiner Bio-one, Kremsmünster, Austria), were centrifuged at 220× g at room temperature for 10 min. This procedure generated spheroids with homogeneous size and geometry. After 48 h spheroids showed a round morphology with clear margins and used for further experiments as T0 [27 (link)]. To assess spheroids growth, culture medium was replaced with fresh medium with or without 4 mM of metformin. Images of the spheroids were acquired at different time points (T0, 2, 3, and 6 days), and spheroid diameters were measured with ImageJ software [34 (link)].
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3

Measurement of cytokine responses

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The mononuclear cell fraction was isolated by density centrifugation of EDTA anticoagulated blood, diluted 1 : 1 in pyrogen-free saline, over Ficoll-Paque (Pharmacia Biotech, Uppsala, Sweden). Isolated cells were washed twice in saline and resuspended in culture medium (RPMI, Invitrogen, Carlsbad, California, USA) supplemented with 10 μg/mL gentamicin, 10 mM L-glutamine, and 10 mM pyruvate. Cell counts were performed in a Coulter counter (Coulter Electronics). A total of 5 × 105 mononuclear cells in 100 μL were added to round-bottomed 96-well plates (Greiner) with RPMI, sonicated Mycobacterium tuberculosis (MTB) (1 μg/mL end protein concentration, strain H37Rv), Escherichia coli lipopolysaccharide (LPS; 1 ng/mL; Sigma-Aldrich, St. Louis, MO, USA), heat-killed Staphylococcus aureus (1 × 106 microorganisms/mL, clinical isolate), or heat-killed Candida albicans (1 × 106 microorganisms/mL, strain UC820). After 24 h (for determination of TNF-α, IL-1β, and IL-6) or 48 h (for determination of IFN-γ and IL-10) of incubation, plates were centrifuged and supernatants were stored at −20°C until analysis. Cytokines were measured batchwise using commercially available ELISAs (R&D Systems, MN, USA, and Sanquin, Amsterdam, Netherlands) according to the protocols supplied by the manufacturers.
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4

Spheroid-based Collagen Invasion Assay

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Spheroids were generated by seeding LLC cells (1 × 103) or MDA-MB231 cells (1 × 10³) in each well of a non-adherent, round-bottomed 96 well-plates (Greiner BioOne, Kremsmünster, Autria) in DMEM containing 1% FBS and 20% high-viscosity methyl cellulose (Sigma Aldrich) or 10% FBS lipid depleted and 25% high-viscosity methyl cellulose (MDA-MB231 spheroids). After 24 h (LLC spheroids) and 48 h (MDA-MB231 spheroids) of culture, spheroids were collected, embedded in type I collagen gels at 2 mg/ml (BD Biosciences, San Jose, CA, USA) in 12 well-plates, and maintained in DMEM 1% FBS or DMEM 1% FBS lipid depleted (for MDA-MB231 spheroids) at 37 °C for 24 h. FABP4 and SCD1 inhibitors were diluted into 500 μl of DMEM and added over solid collagen containing spheroids. Cells were examined under a Zeiss Axiovert 25 microscope equipped with an Axiocam Zeiss camera and KS 400 Kontron image-analysis software (Carl Zeiss Microscopy, Zaventem, Belgium).
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5

Platelet Stimulation Assay for DENV2 Infection

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Platelets (2 x106 cells/well) were seeded in round-bottomed 96-well plates (Greiner Bio-One, Kremsmünster, Austria, cat. no. #650180) and stimulated with RPMI, mock, DENV2 virus ((multiplicity of infection (MOI) 1.6) or thrombin (Synapse Research Institute, Maastricht, The Netherlands, lot. no. #180719, final concentration 0.5 U/mL) for 20 minutes at 37°C. The plates were centrifuged at 430g for 8 minutes and supernatant was stored at -80°C for further analysis.
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6

PBMC Isolation and Stimulation Protocol

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Peripheral blood mononuclear cells (PBMCs) were isolated healthy individuals (written informed consent was obtained from all subjects), as described earlier50 (link)51 (link). Briefly, PBMCs were isolated by density gradient centrifugation using Ficoll-Paque PLUS (GE Healthcare) and collecting the white interphase. Next, PBMCs were washed twice in cold PBS and concentrations were adjusted to 5 × 106 cells/ml in RPMI-1640 Dutch Modified culture medium (RPMI supplemented with 2 mM l-glutamine, 1 mM pyruvate; GIBCO Invitrogen, Carlsbad, CA, USA). PBMC (5 × 105), in a volume of 100 μl volume in round-bottomed 96-well plates (Greiner, Alphen a/d Rijn, The Netherlands), were incubated with either 100 μl of culture medium (negative control) or one of the following stimuli: B. quintana LPS and E. coli LPS (10 ng/ml).
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7

PBMC stimulation with PPD and SEB

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Freshly isolated PBMC or enriched CD4+ and CD8+ cells were cultured in round-bottomed 96-well plates (Greiner) at 1.5 x 105 cells/well in RPMI 1640 (Gibco) supplemented with 1% L-Glutamine (Sigma-Aldrich), 10% heat inactivated human AB serum (Sigma-Aldrich) and 10 mM HEPES (Lonza) (for simplicity reasons called complete medium in the remaining manuscript) for 5 days at 37°C and 5% CO2. Cells were stimulated with purified protein derivatives of M.tb. (PPD; 10 μg/ml; Statens Serum Institute), or Staphylococcus enterotoxin B (SEB; 1.5 μg/ml; Sigma-Aldrich). Thereafter the cells were washed to remove antigens and counted.
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8

Platelet-rich Plasma Isolation and Activation Protocol

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Platelet-rich plasma (PRP) was isolated from healthy donors as previously described (32 (link)). In brief, 3.2% citrate-anticoagulated whole blood tubes (BD Vacutainer, Becton Dickinson Biosciences, Franklin Lakes, NJ, USA) were centrifuged at 156g for 15 minutes at room temperature without a break and with slow acceleration. The two third upper layer was considered as platelet-rich plasma and was adjusted to 200 x 103/μL platelets for further stimulations using RPMI 1640 medium (Gibco, Thermo Fisher Scientific, Massachusetts, USA, cat. no. #22409015). Platelets (5, 10 and 20 x106cells/well) were seeded in round-bottomed 96-well plates (Greiner Bio-One, Kremsmünster, Austria, cat. no. #650180) and pre-treated with RPMI or dengue virus-2 non-structural protein-1 (DENV NS1, strain Thailand/16681/84; Native Antigen, Oxford, UK, batch. no. #18042710, final concentration 10 μg/mL) for 20 minutes at 37 °C. Next, platelets were stimulated with thrombin (Synapse Research Institute, Maastricht, The Netherlands, lot. no. #180719, final concentration 0.5U/mL) or RPMI as control for another 20 minutes at 37 °C. Plates were further centrifuged at 430g for 8 minutes to obtain supernatant and stored at -80°C for further analysis.
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9

Erythrocyte Lysis Assay for Pneumococcal Strains

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Using 96-well round-bottomed plates (Greiner, Germany), 200 μL of 10% purified human erythrocytes (Red Cross Blood Service, Australia) suspended in PBS was inoculated with 0.22u filtered minimal media of S. pneumoniae “locked” strains expression SpnIII alleles A to F and wild-type D39. Chemically defined media (CDM) was prepared using SILAC RPMI (no glucose, no phenol red; Life Technologies Australia) 5% glucose and prepared as per Minhas et al. (52 (link)). Erythrocytes were resuspended in dilutions ranging from neat media down to a 1/100 dilution of media and PBS. Plates were incubated at 37°C, shaking at 200 rpm (lid on) for 1 h. Plates were removed and centrifuged at 1,000 rpm for 10 min to pellet surviving erythrocytes. Then, 100 μL of supernatant was moved to a 96-well flat-bottomed plate (Greiner, Germany) and read at an absorbance of 540 nm to detect amount of free haem and, indirectly, amount of lysis. No difference in absorbance observed between filtered minimal media and blank PBS. A PBS solution of 5% Saponin was used to produce 100% erythrocyte lysis, which was used as a standard for the amount of lysis of the S. pneumoniae media. Results represent triplicate values.
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10

Assessing Immunosuppressant Efficacy via MLR

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MLRs were set-up with 50 μl of 1 × 10E6 donor PBMCs with 10E5 irradiated (30 Gy/3000 rad) HLA-mismatched stimulator cells (antigen-specific stimulus), or donor PBMCs were stimulated with the mitogen phytohemagglutinin (non-antigenspecific stimulus) in triplicate in 96-well round-bottomed plates (Greiner Bio-one) in the presence of different concentrations paricalcitol or one of the comparators (tacrolimus or mycophenolic acid). Proliferation was measured on day 5 by the incorporation of 3H-thymidine, which was added during the last 16 h of culture. The results were expressed as the median counts per minute for each triplicate culture.
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