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37 protocols using histosec

1

Bone Regeneration Histological Analysis

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Subsequently, the pieces were washed in tap water for 24 h and placed in 10% ethylenediaminetetraacetic acid (EDTA) solution containing 4.13% TitriplexTM III (Merck KGaA, Darmstadt, Germany) and 0.44% sodium hydroxide (LabsynthTM, São Paulo, Brazil) for a period of 7 weeks. Specimens were submitted to standard histological procedures for embedding in HistosecTM (Merck KGaA, Darmstadt, Germany).
Semi-serial sections with a 5 μm thick coronal plane were used to reach the center of the 8 mm defect using the scale free size tool available in DP controller software (3.2.1.276—2001-2006, Olympus CorporationTM, Tokyo, Japan). Subsequently, the sections were stained by Masson’s trichrome, hematoxylin, and eosin (for analysis of osteocytes), picrosirius red solution and against Harris hematoxylin stain (for evaluation of total collagen fibers, type 1 and 2), and immunostaining for markers of bone formation and resorption (vascular endothelial growth factor, VEGF; bone morphogenetic protein; BMP—2/4; osteocalcin, OCN; tartrate-resistant acid phosphatase, TRAP).
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2

Histological Specimen Preparation for Bone Analysis

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The specimens were washed in tap water for 24 h and immersed in 10% ethylenediaminetetraacetic acid (EDTA—a solution containing 4.13% Titriplex™ III Merck KGaA, Darmstadt, Germany and 0.44% sodium hydroxide Labsynth, São Paulo, Brazil), for a period of approximately 60 days [52 (link)]. Then, the collected bone fragments underwent successive standard histological staging and were finally included in HistosecTM (Merck KGaA, Darmstadt, Germany). Semi-serial coronal cuts of 5 µm thickness were performed, prioritising the centre of the circular defect and stained with haematoxylin-eosin.
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3

Demineralization and Histological Analysis of Bone Fragments

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The pieces were then washed in running water for 24 h and subjected to demineralization in 10% EDTA (4.13% tritiplex® III, Merck KGaA, Hessen, Germany and 0.44% sodium hydroxide®, Labsynth, São Paulo, Brazil), with weekly changes of the solution for a period of approximately six weeks, carried out at the Anatomy Laboratory of Bauru School of Dentistry (University of São Paulo).
The bone fragments collected were submitted to standard histological processing and included in a HistosecTM (Merck KGaA®, Darmstadt, Germany) at the Histology Laboratory of the University of Marília (Unimar). Semi-serial coronal slices with 5 µm thicknesses were made, prioritizing the center of the defect, and stained with hematoxylin-eosin, Masson’s trichrome, and picrosirius-red.
The defect images were obtained using the Leica DFC 310FX high resolution digital camera (Leica®, Microsystems, Wetzlar, Germany) connected to the Leica DM IRBE inverted laser microscope and LAS 4.0.0 capture system (Leica®, Microsystems, Heerbrugg, Switzerland).
Each type of fiber by color was analyzed using the Axio Vision Rel. 4.8 Ink image software (Carl Zeiss® MicroImaging GmbH, Jena, Germany). The interlaced bone was recognized for its random and unorganized fibrillar pattern, usually with polarization colors ranging from red/orange to light green/yellow, depending on the width of the fiber.
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4

Evaluating SARS-CoV-2 Vaccine Candidates in Mice and Hamsters

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Hamsters and C57BL/6 or hACE2 mice received two administrations at 21 days apart, containing 10 μg of RBD, N or SpiN adjuvanted with 50 μg of Hiltonol (Poly ICLC, supplied by Oncovir, Washington, D.C.)40 (link),42 (link). Alternatively, they received one dose of a non-replicating chimpanzee adenovirus encoding the S protein from the Wuhan SARS-CoV-2 (Covishield) at a concentration of 1010 PFU/mice. The solutions were inoculated intramuscularly in a final volume of 50 μL into each tibial muscle. Thirty days post immunization, animals were challenged intranasally with 5 × 104 PFU of SARS-CoV-2 Wuhan, Delta or 2.5 × 104 of Omicron isolates (for hACE2 mice) and 105 PFU for hamsters. The body weight, clinical signs and survival were evaluated for 11 days post-infection. For the histopathology analyses, harvested tissues were fixed in phosphate-buffered 10% formalin for seven days, embedded in paraffin, processed using a Tissue processor PT05 TS (LUPETEC, UK) tissue processor and embedded in histological paraffin (Histosec, Sigma-Aldrich). The 4 μm thick sections were stained with hematoxylin and eosin.
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5

Histopathological and Immunohistochemical Analysis of Lung Tissues

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For histopathological analyses, lung fragments were fixed in 10% formaldehyde for seven days after collection. Samples were processed in alcohol and xylol using the PT05 TS tissue processor (LUPETEC, UK) and embedded in histological paraffin (Histosec®, Sigma). The 4 μm thick sections of tissues were performed using the microtome RM2125 RTS (Leica) and stained with hematoxylin and eosin.
Prior to initiating the IHC staining protocol, paraffin-embedded section tissue was deparaffinized and heat-mediated antigen retrieval with Tris/EDTA buffer pH = 9.0 was performed for 20 min at 60 °C. The endogenous peroxidase activity was blocked with 3% hydrogen peroxide for 30 min. Slides were incubated with anti-mouse CD4 (Cat. # ab183685; 1:50; Abcam), anti-mouse CD8 (Cat. # ab217344; 1:200; Abcam) and anti-mouse CD19 (Cat. # ab245235; 1:200; Abcam) primary antibodies overnight at 4 °C. Next, the slides were incubated with MACH 1 Universal HRP-Polymer (Biocare Medical, USA) for 30 min at RT, according to the manufacturer’s recommendations. Finally, the slides were stained using 3,3′-diaminobenzidine (DAB) chromogen (Biocare Medical, USA) and counterstained with Mayer’s hematoxylin. The histopathological and immunohistochemical analyses were carried out by two independent pathologists.
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6

Histological Analysis of Mouse Testes

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Right testes were fixed in paraformaldehyde (10 %) fixative solution by immersion for 24 h. After embedding in paraffin (Histosec®, Merck KGaA, Darmstadt, Germany), 5-μm sections were stained with hematoxylin and eosin. Spermatogenesis and Sertoli cell count were evaluated under a light microscope (Olympus Biological Microscope Model CH30, Olympus Optical Co., LTD., Tokyo, Japan) at 400× magnification. The dynamics of spermatogenesis was determined by estimating the frequency of the stages: I–IV and V–VI (two generations of spermatids), VII–VIII (mature spermatids), IX (only one generation of spermatids), X–XI (two generations of spermatids), XII (secondary spermatocyte) in 105 transverse sections of seminiferous tubules per animal (Supplementary Data 1 and 2). Furthermore, the total number of Sertoli cells with evident nucleoli (the two meiotic divisions that occur in stage XII increase Sertoli cell activity, and present the most evident nucleoli) was calculated by averaging counts from 10 seminiferous tubules per mouse at stage XII of spermatogenesis (Supplementary Data 3) [20 (link)].
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7

Prostatic Tissue Fixation and Sectioning

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The prostatic complexes were fixed by immersion in methacarn (60% methanol, 30% chloroform and 10% acetic acid; n = 5 animals/group) for 4 hours at 4°C or in 4% paraformaldehyde (buffered in 0.1 M phosphate, pH 7.2; n = 3 animals/group) for 24 hours. Then, the tissues were dehydrated through a crescent ethanol series, clarified in xylol, embedded in paraplast (Histosec, Merck) and sectioned to 5 μm on a Leica microtome (Leica RM2155; Nussloch). Sections were stained by haematoxylin-eosin (HE). Specimens were analysed and digitized using a Zeiss Axioscope A1 light microscope (Zeiss).
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8

Olfactory Rosette Morphology in Sea Bream

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To characterize the general morphology of the olfactory rosettes in control sea bream (n=3) and in low pH/high PCO2 (n=3) conditions, the tissues fixed in 4% PFA and stored in 70% ethanol were processed and embedded in paraffin. Briefly, tissue samples were dehydrated in ethanol (70%, 96% and 100%), saturated in xylene and impregnated and embedded in low melting point paraffin wax (Histosec, Merck). Serial 5 µm sections of each tissue sample were mounted on poly-L-lysine (Sigma-Aldrich) coated glass slides and stained with Masson's trichrome as previously described (Witten and Hall, 2003 (link)). Stained histological sections were observed under a microscope (Leica DM2000) coupled to a digital camera (Leica DFC480; IM50-software) linked to a computer, for digital image analysis. The software ImageJ (Abràmoff et al., 2006 ) was used to determine the number of mucous cells in the non-sensory epithelium as well as the ratio between the non-sensory epithelium versus sensory epithelium; this was obtained by dividing the length of the apical non-sensory epithelium by the total length of the olfactory lamella (from the top to the central raphe), as previously described (Velez et al., 2019 (link)).
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9

Hemimandible Demineralization and Histologic Analysis

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Hemimandible segments were demineralized in 4.13% EDTA (Titriplex III; Merck, Darmstadt, Germany) aqueous solution containing 0.44% sodium hydroxide (LabSynth, Diadema, Brazil), pH 7.2, at room temperature, for approximately 40 days, with weekly changes of the solution. Subsequently, the hemimandibles were subjected to histologic processing and embedded in paraffin plus synthetic resin (Histosec; Merck). Eight longitudinal semi-serial 5-mm-thick sections with an interval of 100 mm between sections were obtained for each sample and stained with hematoxylin-eosin.
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10

Histological Evaluation of Skin Regeneration

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Intact and regenerating skin samples from sea bream (0 h, 6 h, 1, 2, 3 and 4 days after scale removal) were fixed in 4% PFA, decalcified overnight in 0.5 M ethylenediaminetetraacetic acid (EDTA, pH 8) and dehydrated in ethanol (70, 90 and 100%), saturated in xylene and impregnated and embedded in low melting point paraffin wax (Histosec, Merck). Serial 5 μm sections of skin were mounted on 3-aminopropyltriethoxysilane (APES) coated glass slides, dried overnight at 37 °C, cooled to room temperature and stored until required. Masson’s trichrome staining was used to distinguish between collagen rich and/or mineralized and non-mineralized tissue as previously described [8 (link)]. Stained sections were analysed using a microscope (Leica DM2000) coupled to a digital camera (Leica DFC480) linked to a computer for digital image analysis. Digital images were used to quantify the thickness of the epidermis, basement membrane and dermis as well as the number and diameter (20 vessels per section) of blood vessels in intact (N = 3, 1 section per fish) and regenerating (N = 3, 1 section per fish) skin using ImageJ v1.44o software [63 ].
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