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107 protocols using pclamp8

1

Whole-cell Patch-clamp Recording Protocol

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Whole-cell patch-clamp recording was performed as previously described (Tu et al., 2018 (link)). Currents were filtered at 1 KHz and digitized at 5 kHz using an Axonpatch 200B amplifier and Digidata 1322 a 16-bit data acquisition system. Acquisition control and analysis were performed with pClamp 8.2 and Clampfit 9 (Molecular Devices). Patch pipettes with a resistance of 2–4 MΩ were fabricated from borosilicate glass (Sutter instrument) and fire polished. Only cells with stable giga-ohm seals were used for data collection and subsequent analysis. Records were analog filtered at 1 kHz before digital sampling at 5 kHz. Millisecond solution exchange was achieved with a fast-step perfusion system (Warner instrument, SF-77B) custom modified to hold seven microcapillary tubes in a linear array.
The holding potential was –80 mV unless otherwise indicated. For experiments in Figure 5, the voltage was held at –80 mV and ramped to +80 m at 1 V/s once per second. The slope of the first ramp after the peak current in response to acids was measured to determine the conductance.
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2

Cardiac Myocyte Ca2+ Dynamics Analysis

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Ca2+ transients and sarcoplasmic reticulum Ca2+ content were assessed in cardiac ventricular myocytes isolated from 12‐week‐old male MK2+/+ and MK2−/− mice as described previously.43 Briefly, myocytes were incubated with 10 μmol/L Fluo‐4 AM (Molecular Probes, Carlsbad, CA), then transferred to a perfusion chamber on the stage of a Zeiss LSM 510 microscope (Carl Zeiss AG, Jena, Germany), and perfused with a Tyrode solution. The perfusion chamber was fitted with bipolar platinum electrodes attached to a Grass SD9 stimulator and maintained at 37°C. To assess Ca2+ transients, myocytes were continuously field stimulated at a rate of 2 Hz. To assess the sarcoplasmic reticulum Ca2+ content, myocytes first received 10 conditioning pulses at 2 Hz to ensure that each cell had a similar activation history. Upon completion of the conditioning pulses, 10 μmol/L caffeine was applied to the myocyte for 10 seconds via a rapid solution switcher. Changes in free Ca2+ were measured in line scan mode with excitation at 488 nm and emission measured at 505 to 530 nm. Myocytes were scanned repeatedly along the length of the cell at 1.5‐ms intervals for 7 seconds. Sequential scans were stacked to create a two‐dimensional image. Image J (National Institutes of Health, Bethesda, MD) was used to visualize the Ca2+ transients, and the data were analyzed with pCLAMP 8.2 (Molecular Devices).
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3

Patch-Clamp Recording of Calcium Currents

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Calcium channel currents were recorded with either an EPC7 (HEKA Electronik) or an Axopatch 200 (Molecular Devices) amplifier. Data were sampled at 20 kHz and filtered at 10 kHz (−3 dB) using either PatchMaster (HEKA Electronik) or pCLAMP8.2 (Molecular Devices) software. Access resistance and input resistance were monitored by a step of −10 mV. Recordings in which the access resistance increased by >20% were discarded. Leak current was subtracted online using a P/−4 protocol, and recordings with leak currents over 150 pA at holding potential were discarded.
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4

Two-Electrode Voltage-Clamp of Xenopus Oocytes

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Stage V–VI Xenopus laevis oocytes were prepared as previously described12 (link)49 (link). Oocytes were injected up to 24 hr after isolation with a total of 5 ng cRNA, and assayed 5–10 days later. Two electrode voltage-clamp recordings were carried out at RT using GeneClamp 500 connected to digidata1322A and pCLAMP 8.2 (Molecular Devices, CA, USA). Electrodes (Sutter Instruments, CA, USA) were filled with 3 M KCl and had resistance of 0.5–1 MΩ. Oocytes were continuously perfused with normal frog ringer (NFR) solution without calcium containing (mM): 115 NaCl, 2.5 KCl, 2 MgSO2, and 10 HEPES, pH 7.4 with NaOH.
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5

Electrical Signal Analysis Protocol

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Pclamp 8.2 and Clampfit 10 (Molecular device, USA), Excel (Microsoft, USA) and Prism 5.3 (Graphpadsoftware, CA, USA) were used for data acquisition and analysis. Data are presented as mean±standard error. Unpaired student t test and one-way ANOVA followed by Tukey test were used to compare the means. Statistical significance was considered when p<0.05.
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6

Generating Stable HERG Cell Lines

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Stable cell lines were generated by transfecting HEK293 cells with mutant HERG pcDNA3 and selecting in G418 as previously described10 (link). Single colonies of G418 resistant cells were then tested for Kv11.1 expression by immunoblot. Cell lines that gave a robust 155kD band on immunoblot were used for electrophysiological analysis. IKv11.1 was measured using the whole-cell patch clamp technique as previously described10 (link). Voltage protocols are described in the Fig. 3 legend and data analysis was done using pCLAMP 8.0 (Axon Instruments) and Origin (6.0 Microcal).
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7

Generating Stable Cell Lines Expressing Mutant Kv11.1

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Stable cell lines were generated by transfecting HEK cells with mutant Kv11.1 pcDNA3 and selecting in G418 as previously described.16 (link) Single colonies of G418 resistant cells were then tested for Kv11.1 expression by immunoblot. Cell lines that gave a robust 155kD band on immunoblot were used for electrophysiological analysis. Kv11.1 current was measured using the whole-cell patch clamp technique as previously described.16 (link) Voltage protocols are described in Fig. 3 and data analysis was done using pCLAMP 8.0 (Axon Instruments) and Origin (6.0 Microcal).
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8

Electrophysiological and histological analysis

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Data are expressed as mean ± SEM. For electrophysiological experiments, data were stored on a computer disk for off-line analysis (pClamp 8.0; Axon Instruments Inc., Foster City, CA). The differences were analyzed using one-way analysis of variance followed by Bonferroni’s multiple comparison tests. For ISH histological experiments, the differences in signal intensity were analyzed using the Kruskal–Wallis test followed by Dunn’s multiple comparisons tests. The differences in the percentages were analyzed using one-way analysis of variance followed by Bonferroni’s multiple comparison tests or unpaired t tests. All tests were performed using Prism4 (GraphPad Software Inc, San Diego, CA). Two-tailed P values lower than 0.05 were considered to be significant.
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9

Hemichannel Current Recording in Oocytes

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Hemichannel currents were recorded 24 hours after cRNA injection using a GeneClamp 500 amplifier controlled by a PC-compatible computer through a Digidata 1440A interface using pClamp 8.0 software (Axon Instruments, Foster City, CA). Electrodes (1.5mm diameter glass, World Precision Instruments, Sarasota, FL) were pulled to a resistance of 1–2 MΩ (Narishige, Tokyo, Japan) and filled with 3M KCl, 10mM EGTA, and 10mM HEPES, pH 7.4. Oocytes were recorded in MB medium without added calcium (Gerido et al., 2007 (link)). Hemichannel current-voltage (I–V) curves were obtained by clamping cells at −40 mV and subjecting them to 5 second depolarizing voltage steps ranging from −30 to +60 mV in 10 mV increments.
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10

Generating Stable HERG Cell Lines

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Stable cell lines were generated by transfecting HEK293 cells with mutant HERG pcDNA3 and selecting in G418 as previously described10 (link). Single colonies of G418 resistant cells were then tested for Kv11.1 expression by immunoblot. Cell lines that gave a robust 155kD band on immunoblot were used for electrophysiological analysis. IKv11.1 was measured using the whole-cell patch clamp technique as previously described10 (link). Voltage protocols are described in the Fig. 3 legend and data analysis was done using pCLAMP 8.0 (Axon Instruments) and Origin (6.0 Microcal).
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