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7 protocols using mercury 400

1

Spectroscopic Characterization of Samples

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Infrared spectra have been recorded on a FT-IR 520 Nicolet Spectrophotometer. 1H NMR (δ(TMS) = 0.0 ppm) and 31P{1H} NMR (δ(85% H3PO4) = 0.0 ppm) spectra have been obtained on a Varian Mercury 400, Bruker 400, and Bruker 500. ES(+) mass spectra were recorded on a Fisons VG Quatro spectrometer. Absorption spectra have been recorded on a Varian Cary 100 Bio UV-Spectrophotometer and emission spectra on a Horiba-Jobin-Ybon SPEX Nanolog Spectrofluorimeter.
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2

Optimized Organic Synthesis Procedures

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All reactions were performed in flame-dried glassware under a positive pressure of argon. Yields refer to chromatographically and spectroscopically pure compounds, unless otherwise noted. Analytical TLC was performed on 0.25 mm glass-backed 60 Å F-254 TLC plates (Silicycle, Inc.). The plates were visualized by exposure to UV light (254 nm). Infrared spectra were recorded on a Nicolet IS5 FT-IR spectrophotometer. 1H NMR spectra were recorded on a Varian Mercury400 and a Bruker Biospin GmbH (400 MHz) spectrometers and are reported in ppm using solvent as an internal standard (CDCl3 at 7.26 ppm, or CD3CN at 1.96 ppm). 1H NMR spectra were performed using standard parameters, and data are reported as b = broad, s = singlet, d = doublet, t = triplet, q = quartet, m = multiplet; coupling constant(s) in Hz, integration. 13C NMR spectra were recorded on a Varian Mercury400 (100 MHz) spectrometer. Chemical shifts are reported in ppm, with solvent resonance employed as the internal standard (CDCl3 at 77.2 ppm, or CD3CN at 1.3 and 118.3 ppm).
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3

Scalable Synthesis of Purified Compounds

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All reagents and anhydrous solvents were obtained from commercial suppliers and used without further purification. 1H and 13C NMR spectra were recorded on a Varian Mercury-400, Bruker DPX-400, or DRX-500. Normal-phase chromatography was performed on a Teledyne Isco CombiFlash NextGen 300+ using Luknova SuperSep SiO2 columns. Preparative-scale reverse phase high performance liquid chromatography (RP-HPLC) was performed on an Agilent 1260 Infinity LC system using a Gemini NX-C18 column (110 Å pore size, 5 μm particle size, 150 × 21.2 mm dimensions, mobile phase A = 0.1% TFA in H2O, mobile phase B = 0.1% TFA in MeCN). Final compound purities were determined by analytical RP-HPLC (254 nm) and were > 95% in purity. High-resolution mass spectrometry data were collected at The Scripps Research Institute Center for Mass Spectrometry (ESI-HRMS; Agilent Technologies, LC/MSD TOF 6230).
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4

Conformational Analysis of Receptor Complexes

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All reagents were used as received. The solvents were dried by distillation over the appropriate drying agents. All solvents were obtained from common suppliers and used as received. TLC was carried out on Merck Kieselgel F254 plates (Merck, Germany). The NMR spectra were recorded on a Bruker Mercury 400 instrument (Bruker, Ettlingen, Germany). Chemical shifts are reported in ppm (δ) and were set to the solvent residue peak. J coupling constants values are reported in Hz. Mass spectral analyses were performed with the ESI-TOF technique on a Mariner mass spectrometer from PerSeptive Biosystem (Waltham, MA, USA). The lowest energy conformations of the complexes of receptor 37 with chloride, acetate, and benzoate were found after conducting a conformational search analysis. The selected conformers with the lowest energies were then optimized without any constrains at the DFT/M06-2X/6-31G(d)/C-PCM:DMSO level of theory using program Spartan’18 Parallel Suite (see Supplementary Information for details) [44 (link),45 (link),46 (link),47 (link),48 (link)].
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5

Characterization of Organic Compounds

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All reagents were purchased from commercial suppliers and used without further purification. The progress of all of the reactions was monitored by thin layer chromatography (TLC) with standard TLC silica gel plates, and the developed plates were visualized under UV light. All of the compounds were purified by column chromatography. Chromatography was performed on silica gel (100–200 mesh). Nuclear magnetic resonance spectra (1H, 13C NMR) were recorded on Varian Mercury-400 and Bruker Avance III-500/600 spectrometers and CDCl3-d and CD3OD-d were used as solvent. NMR peaks were calibrated by reference to standard peaks of CDCl3 at 7.26 ppm for 1H and 77.16 ppm for 13C and standard peaks of CD3OD at 3.31 ppm for 1H and 49.00 ppm for 13C. For peak descriptions, the following abbreviations are used: s (singlet), d (doublet), t (triplet), q (quartet), p (pentet), m (multiplet). Electron ionization high-resolution mass spectrometry (EI-HRMS) data were recorded using a Thermo DFS mass spectrometer. ESI-HRMS were recorded using an Agilent QTOF mass spectrometer.
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6

NMR Spectroscopy Experimental Conditions

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The 1H and 13C NMR spectra were recorded on a Varian Mercury 400 (400.49/100.70 MHz) or Bruker AVANCE III 500 (500.13/125.76 MHz) instruments, using standard experimental conditions in CDCl3 or DMSO-d6 with internal Me4Si.
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7

Characterization of Organic Compounds

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Melting points were determined in open capillary tubes in a «Stuart SMP30» apparatus and are uncorrected. The elemental analyses (C, H, N) were performed using the ELEMENTAR vario EL cube analyzer. IR spectra (4000-600 cm -1 ) were recorded on a Bruker ALPHA FT-IR spectrometer using a module ATR eco ZnSe. 1 H NMR spectra (400 MHz) and 13 C NMR spectra (100 MHz) were recorded at a Varian-Mercury 400 and Bruker Avance DRX-500 spectrometers with SiMe 4 as internal standard in DMSO-d 6 solution. LC-MS were recorded using chromatography/mass spectrometric system which consists of high-performed liquid chromatograph «Agilent 1100 Series» equipped with diode-matrix and mass-selective detector «Agilent LC/MSD SL» (atmospheric pressure chemical ionization -APCI). Electron impact mass spectra (EI-MS) were recorded on a Varian 1200 L instrument at 70 eV.
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