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Irdye 800 conjugated secondary antibody

Manufactured by LI COR
Sourced in United States

The IRDye 800-conjugated secondary antibody is a fluorescently labeled reagent used for detection in immunoassays and other applications. The antibody is conjugated with the near-infrared dye IRDye 800, which has a characteristic excitation and emission spectrum suitable for infrared imaging.

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10 protocols using irdye 800 conjugated secondary antibody

1

Evaluating Cisplatin-Induced Apoptosis and Kidney Injury

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Cisplatin were obtained from Sigma-Aldrich (Sigma, CA, USA). Annexin V-FITC/PI Apoptosis Detection Kit was purchased from Beyotime (Shanghai, China). Periodic acid Schiff (PAS), Creatinine Assay Kit and BUN Assay Kit were obtained from Nanjing Jiancheng Bioengineering Institute (Nanjing, China). Fetal bovine serum (FBS), DMEM, and other cell culture reagents were purchased from Invitrogen. Antibodies specific to KIM-1, GAPDH, P-p53, p53, P-p65, p65 were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). RIPK1 and RIPK3 were obtained from BOSTER Biological Technology (Wuhan, China). F4/80+, anti-cleaved caspase-3, TNF-ɑ, P-Smad3, Smad3 and Smad2 were obtained from Cell Signaling Technology (CST, Danvers, MA). IRDye 800-conjugated secondary antibody was obtained from Li-cor biosciences (NE, USA). Lipofectamine 3000 was purchased from SciencBio Technology (Invitrogen, BeiJing, China).
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2

Membrane Protein Analysis by SDS-PAGE

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Crude membranes, including both plasma and intracellular (e.g., ER) membrane fractions, were prepared by sonication, followed by differential centrifugation, as reported previously [29 (link)]. Proteins were solubilized in 10 mM Tris–HCl/1% (w/v) SDS with proteolytic inhibitors (Roche Applied Science) and analysed by SDS–PAGE on Laemmli gels [31 (link)], using 7.5% or gradient (4–20%) gels (Invitrogen), and then eletrotransferred to polyvinylidene difluoride membranes (Pierce) [29 (link)]. Detection and quantitation of immunoreactive proteins used anti-Myc antibody (Covance) and IRDye800-conjugated secondary antibody (LI-COR) with an Odyssey® infrared imaging system (LI-COR). To quantitate the hRFC forms (including the broadly-banding glycosylated hRFC forms and the 65 kDa deglycosylated hRFC), densitometry was performed using the Odyssey® (v 3.0) software. Linearity was confirmed over a 20-fold range of hRFC expression.
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3

Eleutheroside B Inhibits Cisplatin-Induced Injury

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Eleutheroside B was purchased from Chengdu Herbpurify Biotechnology (2018041701, CAS 118-34-3, Chengdu, China). Cisplatin was purchased from Sigma-Aldrich (Sigma, St. Louis, MO, USA). Lactate dehydrogenase (LDH), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl-tetrazolium bromide (MTT), and Annexin V-FITC/PI Apoptosis Detection Kit was obtained from Beyotime (Shanghai, China). Periodic acid-Schiff (PAS), Creatinine Assay Kit, BUN Assay Kit, and Malondialdehyde (MDA) Assay Kit were purchased from Nanjing Jiancheng Bioengineering Institute (Nanjing, China). Dulbecco’s modified Eagle’s medium (DMEM), fetal bovine serum (FBS), and other cell culture reagents were obtained from Invitrogen. Antibodies specific to KIM-1, β-actin, RIPK1, and RIPK3 were purchased from Santa Cruz Biotechnology. Anti-P-MLKL and anti-cleaved-caspase3 were obtained from Cell Signaling Technology (CST, Danvers, MA, USA). IRDye 800-conjugated secondary antibody was purchased from Licor (Lincoln, NE, USA).
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4

V5-Epitope Tagged Protein Expression

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HEK293 cells in 12-well plate were transfected with 1 μg of above expression construct (the V5-epitope tagged version) using 2 μL of Lipofectamine 2000 under OPTI-MEM medium (Thermo Fisher Scientific) for 24 h. The transfected cells were washed once with PBS, and then lysed with 200 μL of SDS-PAGE sample buffer. The cell lysates were sonicated and heated at 60°C for 5 min. The proteins were separated by 8% SDS-PAGE and transferred to a NC membrane (PALL, 66485) by Pierce 2 Fast Blotter (Thermo Fisher Scientific, B103602038). The membrane was first blocked with 5% BSA/TBST (10 mM Tris-HCl, 150 mM NaCl, and 0.1% Tween 20) for 40 min, and then incubated with rabbit anti-V5-epitope antibody (SIGMA) (1:1,000) for 2 h at room temperature. The membrane was washed with TBST for five times (5 min each), and then incubated with IRDye800-conjugated secondary antibody (LI-COR) (1:10,000) for 1.5 h at room temperature under dark and washed as above. The fluorescent signal was detected by Odyssey (LI-COR).
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5

Chemerin Quantification in Colon Explants

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For analysis of chemerin levels in colon explant cultures via SDS-PAGE, 10 ng of recombinant mouse chemerin (aa17–156; R&D) or 30 μL of culture supernatant was boiled with 6× SDS-PAGE loading buffer containing 2-mercaptoethanol. Proteins were separated on a 15% gel and transferred to nitrocellulose membrane (BioRad Laboratories, Mississauga, ON). Blots were blocked with Odyssey blocking buffer (LI-COR, Lincoln, NE) and then incubated with antichemerin (R&D) overnight at 4°C followed by incubation with an IRDye800-conjugated secondary antibody (LI-COR). Immunoreactive bands were detected by scanning at 800 nm using the Odyssey Infrared System (LI-COR Biosciences, Lincoln, NE).
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6

Inhibition of EGFR Signaling in Nude Mice

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BALB/cASlac-nu/nu nude mice bearing PDECX1T0326 tumors were orally administered with theliatinib (15 mg/kg) or gefitinib (20 mg/kg). After 8 h, the animals were sacrificed and tumors were harvested. The tumors were homogenized in cold lysis buffer (Cell Signaling Technology, 9803) containing 1 mM PMSF (BIO BASIC INC., PB0425) and after centrifuging the lysates, the protein supernatant (containing 100 μg protein) were mixed with 5× SDS loading buffer and boiled at 100°C for 10 minutes and SDS-PAGE was performed (5% stacking gel at 80V for 20 minutes, then changed to 120V on 10% separating gel for 1h). Proteins were then transferred to nitrocellulose membranes (0.35A for 90 minutes), and incubated with the following antibodies individually: Phospho-EGFR (Tyr1068) (Invitrogen, 44788G), EGFR (Cell Signaling Technology, 2232), phospho-AKT (Cell Signaling Technology, 4060), AKT (Cell Signaling Technology, 9272), phospho-ERK (Thr202/Thr204) (Cell Signaling Technology, 4370), ERK (Cell Signaling Technology, 4695). After washing with the 1X TBST, the blots were incubated with the secondary IRDye 800-conjugated secondary antibody (LI-COR, 926-32211) and detected with chemiluminescence system.
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7

Western Blot Analysis of Ion Channels

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Total proteins were extracted with RIPA buffer (Beyotime, Zhejiang, China) containing protease inhibitor cocktail tablets (Roche Applied Science, Mannheim, Germany), and separated by SDS‐PAGE (Invitrogen). Then they were transferred onto PVDF membranes and probed with antibodies against Nav1.5, Kv4.3, and Cav1.2 (ASC‐005, APC‐017, and ACC‐003, Alomone Labs, Jerusalem, Israel), Kir2.1 and Kv1.4 (19965‐1‐AP, and 19697‐1‐AP, ProteinTech Group, Wuhan, Hubei, China), Nup107 and GFP (ab73290, and ab290, Abcam, Cambridge, MA, USA), β‐actin, and GAPDH (66009‐1‐Ig and 60004‐1‐Ig, ProteinTech Group). After washing, blots were treated with the appropriate IRDye 800 conjugated secondary antibody (072‐07‐15‐06 and 072‐07‐18‐06, LI‐COR Biosciences, Lincoln, NE, USA) at room temperature for 1 hours. Images were recorded using the Odyssey infrared imaging system and analysed using the Odyssey Application Software v2 (LI‐COR Biosciences).
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8

Kidney Injury Biomarker Assessment

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Antibodies specific for TNF-α, KIM-1, P-p53, p53 cleaved caspase-3, PCNA and β-actin were purchased from Abcam (Abcam, Cambridge, UK). F4/80+, anti-P-Smad2, Smad2, P-Smad3 and Smad3 were obtained from Cell Signaling Technology (CST, Danvers, MA). Anti-NOX4 was purchased from BiossBiotechnology (Bioss, Beijing, China). IRDye 800-conjugated secondary antibody was obtained from Li-cor Biosciences (NE, USA). Streptozotocin was obtained from Sigma-Aldrich (Sigma-Aldrich, St Louis, MO). Annexin V-FITC/PI Apoptosis Detection Kit was purchased from Bestbio (Shanghai, China). Periodic acid Schiff (PAS), Creatinine Assay Kit and BUN Assay Kit were obtained from Nanjing Jiancheng Bioengineering Institute (Nanjing, China). Reactive Oxygen Species Assay (DCF Assay) Kit and Dihydroethidium (DHE) were purchased from Beyotime Institute of Biotechnology (Jiangsu, China). Albumin Mouse ELISA Kit was obtained from Abcam (Abcam, Cambridge, UK).
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9

Quantification of TRPV1 Protein Levels

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Western blot extracts were prepared by lysing RMECs in icecold RIPA buffer in the presence of protease inhibitors (Thermo Scientific Laboratories, Rockford, IL, USA). After vortexing and centrifugation to separate cell debris, protein yield was measured using the BCA protein assay kit (Thermo Scientific Laboratories). Then, 50 lg protein was loaded onto 8% polyacrylamide gels and following separation transferred to Immobilon-P PVDF membranes (Millipore Limited, Watford, UK). Binding of primary antibody against TRPV1 (1:200; ab63083; Abcam) was detected with a LI-COR Odyssey imaging system using IRDye800-conjugated secondary antibody (1:10000, LI-COR Biosciences, Cambridge, UK).
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10

Cisplatin-Induced Kidney Injury: Mechanistic Insights

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Cisplatin, NAC and apocynin were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Lactacte dehydrogenase (LDH), 3-(4,5-dimethylthiazol-2-yl)-2, 5diphenyl-tetrazolium bromide (MTT), Reactive Oxygen Species Assay Kit (ROS) and Annexin V-FITC/PI Apoptosis Detection Kit was obtained from Beyotime (Shanghai, China). Periodic acid Schiff (PAS), Creatinine Assay Kit, BUN Assay Kit and Malondialdehyde (MDA) Assay Kit were purchased from Nanjing Jiancheng Bioengineering Institute (Nanjing, China). DMEM, fetal bovine serum (FBS) and other cell culture reagents were obtained from Invitrogen. Antibodies specific to KIM-1, β-actin, RIP1, RIP3, Nox2 and Nox4 were purchased from Santa Cruz Biotechnology. Anti-P-MLKL, anti-cleaved-caspase3 and anti-cleaved-caspase8 were obtained from Cell Signaling Technology (CST, Danvers, MA, USA). IRDye 800-conjugated secondary antibody was purchased from Licor (USA). Lipofectamine 3000 was obtained from SciencBio Technology (Invitrogen, Beijing, China).
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