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34 protocols using e7023

1

Polymer Film Fabrication and Preparation

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After processing, all films were vacuum dried at 37 °C for 24 hours to ensure complete solvent evaporation. Films were created such that thickness was 70 ± 10 μm and measured using an electronic micrometer (IP54 Swiss Precision Electronics Inc., La Palma, CA, USA.) before further characterization. Prior to work with cells, films were rinsed thrice with DI water, once with ethanol (E7023 Sigma-Aldrich, St. Louis, MO, USA), and once with DI water. The samples were then UV treated for 15 min.
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2

PAME Resuscitation After Cardiac Arrest

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PAME (P5177, Sigma-Aldrich, St. Louis, MO) was dissolved in 100 % ethanol (E7023, Sigma-Aldrich, St. Louis, MO) and then diluted with sterile saline to required concentrations. The injection vial was prewarmed at 37 °C for injection. For asphyxia cardiac arrest (ACA), animals received a single bolus injection of PAME at 0.02 mg/kg intraperitoneally (IP) immediately after ACA surgery. Details of chemicals and solutions used are found in previous publications[2 (link), 15 (link)].
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3

Ultrastructural Analysis of N2a Cells

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After HAS3 transfection, N2a cells were seeded on chamber slides for 24 hours. Samples were washed with 0.1 mol/L cacodylate (Sigma Aldrich C0250, St. Louis, MI) buffer in artificial seawater (ASW) (Sigma Aldrich 95577, St. Louis, MI) and fixed in 0.1 mol/L cacodylate buffer in ASW containing 2.5% glutaraldehyde (Sigma Aldrich G7776, St. Louis, MI) in ASW for 1 hour at room temperature. The cells were postfixed in 1% osmium tetroxide (Sigma Aldrich 419494, St. Louis, MI) in ASW for 90 minutes. Subsequently, the samples were dehydrated through a graded ethanol (Sigma Aldrich E7023, St. Louis, MI) series and embedded in epoxy resin (Sigma Aldrich 755877, St. Louis, MI) overnight at 60°C. Images were acquired via TEM (Hitachi, Tokyo, Japan).
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4

Odorant Exposure Assay for Flies

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A piece of filter paper (approximately 8×8 mm) was placed on the surface of fly food in standard fly vials. One microliter of a given odorant at the specified concentration was applied to the filter paper. Ethanol (E7023, Sigma-Aldrich) was used as a solvent to dilute the odorants. Flies were flipped into fresh vials containing the odorants every 24 hours.
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5

Chronic Alcohol Effects on Dendritic Cells

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MDDCs were treated with 0.1% (~50 mM) or 0.2% (~100 mM) of alcohol (Ethanol or EtOH) (catalog #E7023, Sigma-Aldrich, St. Louis, MO, USA) for 5 days. These in vitro chronic alcohol treatments are equivalent to the physiological blood alcohol concentrations (BAC) of 100 mg/dL and 200 mg/dL respectively, and are close to the legal limit for driving under intoxication of 0.08% (80 mg/dL) and corresponds to BAC in sober alcohol users (200 mg/dL) seen in an emergency room [26 (link)]. Control MDDCs were not treated with alcohol but received media change at the same time as the rest. Alcohol-treated MDDCs were kept in a separate incubator humidified with alcohol. Additionally, to address evaporation issues, alcohol treatments were replenished in full every 24 h. MDDCs receiving TSA were pre-treated for 2 h with 50 nM TSA (catalog #1406, Tocris, Bio-Techne Corporation, Minneapolis, MN) as previously reported by us [9 (link),12 (link)]. TSA treatment was replenished during media change every 48 h. Both ethanol and TSA concentrations were re-added to cells after 5 day post chronic effect and prior to initiation of ROS measurement, as further explained.
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6

mIMCD-3 Estradiol Treatment Assay

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mIMCD-3 cells (ATYCC CRL-2123, American Type Culture Collection) were cultured as previously described [27 (link)] in Dulbecco’s Modified Eagle Medium (F12, ThermoFisher Scientific) containing 10% fetal bovine serum (ThermoFisher Scientific) and 1% penicillin-streptomycin (ThermoFisher Scientific). Cells were incubated at 37 °C in 5% CO2-95% air. Passages 4–6 were used. Cells were grown in 12-well plates and allowed to reach 100% confluency. Cells were serum starved for 3 h, then they were treated with 17ß-estradiol (E2, E2758, Sigma-Aldrich Co.) or vehicle for 24 h at final concentrations of 10, 100, or 1000 nM. E2 was dissolved in 0.1% ethanol (molecular grade, E7023, Sigma-Aldrich Co.). Values reported are means ± SE and represent results of cells from three experiments with cell lysates assayed in triplicate.
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7

Quantifying SK-Hep1 Cell Proliferation

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SK-Hep1 cells were seeded in 6-well plates (~1000-5000 cells per well) and subjected to the indicated treatments, with the drug being removed to terminate the treatment. Two weeks later, plates were washed in PBS, fixed with 100% methanol (Sigma-Aldrich, E7023) and stained with a filtered solution of 5% w/v crystal violet (crystal violet, Sigma-Aldrich, C3886). After washing with tap water, the colonies were counted both manually (by eye) and digitally using a ColCount automated colony counter.
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8

Histological Analysis of Murine Nasal Mucosa

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The collected nasal mucosa tissues of mice were fixed in 10% neutral formalin (HT501128, Sigma-Aldrich, St. Louis, MO) for 24 h, and then embedded in paraffin (P3558, Sigma-Aldrich, St. Louis, MO). Next, the tissues were made into sections using paraffin slicer (E0972, Beyotime, Shanghai, China). Subsequently, the sections were immersed in xylenes (247642, Sigma-Aldrich, St. Louis, MO) for deparaffinization. After that, the tissue samples were placed in different gradients of ethanol prepared with 100% ethanol (E7023, Sigma-Aldrich, St. Louis, MO) and double distilled water for sample hydration. Later, the tissue sections were soaked and washed three times for 3 min using phosphate buffer saline solution (PBS; C0221A, Beyotime, Shanghai, China). After being stained thoroughly with haematoxylin solution (C0107, Beyotime, Shanghai, China) for 10 min and eosin solution (C0109, Beyotime, Shanghai, China) for 3 min, the sections were soaked with xylene twice for 4 min each time, and then the tissue samples were sealed with neutral resin. Finally, the sections were observed and photographed under an optical microscope (DMi8, Leica, Wetzlar, Germany) at a magnification of ×200.
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9

Tamoxifen and Rapamycin Treatment Regimen

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Tamoxifen (20 mg; T5648; Sigma-Aldrich) was dissolved in a mixture of ethanol (100 µl; E7023; Sigma-Aldrich) and sunflower oil (900 µl; W530285; Sigma-Aldrich). Mice received 100 µl of tamoxifen via an intraperitoneal injection on P31, P33, P35, P39, and P42. Rapamycin (BML-A275-0025; Enzo) was dissolved in ethanol to make a stock solution (50 mg/ml). The stock solution was then diluted to 1 mg/ml in a saline solution that contained polyethylene glycol (5% wt/vol; 88440; Sigma-Aldrich) and Tween 80 (5% wt/vol; P4780; Sigma-Aldrich). Mice received 100 µg of rapamycin (∼5 mg/kg) five times a wk via an intraperitoneal injection.
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10

Abdominal Fat RNA Isolation Protocol

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RNA was isolated from the abdominal fat bodies using Trizol LS (ThermoFisher, #10296028). 300 μL of Trizol LS was added to fat bodies in 100 μL of PBS. The tissue was homogenized with a motorized pestle for 2 minutes before adding another 600 μL of Trizol LS (3:1 mixture of Trizol LS:PBS). The resulting solution was centrifuged at 12,000g for 10 minutes at 4°C. The aqueous supernatant layer was collected in a new tube, while carefully avoiding disturbing the other layers of the phase separated solution. RNA was extracted from the aqueous supernatant layer by vigorously shaking with 240 μL of chloroform (Fisher Scientific, #C298), again carefully avoiding other layers following phase separation. The aqueous phase was transferred to a new tube and the RNA was precipitated by incubating at room temperature with 500μL of 100% isopropanol (Sigma-Aldrich, #I9516). Following centrifugation at 12,000g for 10 minutes at 4°C, the supernatant was removed leaving only the RNA pellet. The pellet was washed with 1 mL of 75% ethanol (Sigma-Aldrich, #E7023), then air dried for 5–10 minutes before resuspension in RNase–free water.
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