The largest database of trusted experimental protocols

12 protocols using lrsii

1

Characterization of PBMC Immune Profiles

Check if the same lab product or an alternative is used in the 5 most similar protocols
PBMC from the WIHS repository were thawed and incubated for 48 hours and during the final 5 hours of incubation the cultures were supplemented with Brefeldin A (1:100, BD), PMA (50ng/ml, Invivogen) and Ionomycin (1ug/ml, Invivogen). The cells were washed, stained for viable cells (LIVE/DEAD Aqua Fixable Dead Cell Stain Kit, Invitrogen), surface stained, fixed/permeabilized (Fix/Perm Kit BD Biosciences) and stained for intracellular AID-PerCP (IC39101C, RnD System). The following antibodies were used for immunophenotyping of PBMC: CD19-ECD (IM2708U, Beckman Coulter), CD86-AF-700, CD10-PE-Cy7, CD4-Pacific Blue, CD127-APC-H7, CD71-FITC, CD38-PE, CD25-PE, CD24-PercpCy5.5 (all antibodies were purchased from BD Biosciences except when stated otherwise). All samples were acquired on an LRSII (BD, Bioscience) flow cytometer and the data were analyzed using FlowJo software (Tree Star Inc).
+ Open protocol
+ Expand
2

Quantifying Intracellular IL-10 in Bregs

Check if the same lab product or an alternative is used in the 5 most similar protocols
To determine endogenous intracellular IL-10 production, PBMC were cultured for 48 hours; during the final 5 hours of incubation the cultures were supplemented with Brefeldin A (1∶100, BD), PMA (50 ng/ml, Invivogen) and Ionomycin (1 ug/ml, Invivogen). After incubation the cells were washed, stained for viable cells (LIVE/DEAD Aqua Fixable Dead Cell Stain Kit, Invitrogen), surface stained, fixed/permeabilized (Fix/Perm Kit BD Biosciences) and stained for intracellular IL-10 (IL-10-AF-647, eBioscience). To determine spontaneous expression of IL-10 by Bregs from HIV-infected individuals and healthy controls, PBMCS were incubated overnight, stimulated for the final 5 hours and stained as described for healthy controls. The following antibodies were used for immunophenotyping of PBMC: CD19-ECD (Beckman Coulter), PD-L1-PE-Cy7 (eBioscience), CD24-PE, CD38-FITC, HLA-DR-PE-Cy7, CD4-Pacific Blue, CD8-APC-H7, Lineage-1-FITC, CD11c- AF-700, HLA-ABC-PE-C7 and CD107a-PE-C5 (BD, Bioscience). HIV-specific CD8+ T cells were identified by binding to MHC-1-APC Dextramer® (Immudex) and HIV-infected CD4+ T cells were identified by binding to KC-57-PE antibody (Beckman Coulter). All samples were acquired on an LRSII (BD, Bioscience) flow cytometer and the data was analyzed using FlowJo software (Tree Star Inc).
+ Open protocol
+ Expand
3

Multilineage Differentiation Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Annexin-APC and PI (Thermo Fisher Scientific) were used for apoptosis analysis. CD11b-PE (Beckman Coulter, Tokyo, Japan) was used for granulocytic differentiation analysis. CD14-Alexa Fluor (Thermo Fisher Scientific) was used for monocytic cell differentiation. Cells were incubated for 15 min with indicated antibodies and then detected using LRSII (BD Biosciences, San Jose, CA). Results were analyzed using the FlowJo software (version 9.3.2).
+ Open protocol
+ Expand
4

Lymph Node Characterization in Mice

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mice were sacrificed at the age of 5 months and the axillary, cervical and inguinal lymph nodes were surgically excised. Organs were forced through a nylon screen to make single cell suspensions and cells were washed and re-suspended in PBS with 2% FBS. Thereafter, cells were stained with fluorochrome-labeled anti-CD3 PE and anti-B220 FITC (Biolegend). Analysis was performed with LRS II (BD bioscience).
+ Open protocol
+ Expand
5

Hck Inhibition Modulates TLR9 Response

Check if the same lab product or an alternative is used in the 5 most similar protocols
Chemical inhibition of Hck was achieved using PP2 (Millipore). Cells were incubated overnight with indicated concentrations of the inhibitor, supplemented with TLR9-L, and further cultured overnight. Only events corresponding to living cells (determined by Live/Dead® Fixable Aqua staining, Life Technologies) were acquired on an LRSII (BD Biosciences) flow cytometer and the data analyzed using FlowJo software (Tree Star Inc.).
+ Open protocol
+ Expand
6

Flow Cytometry Analysis of Stem Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were analyzed using LRSII (BD, Pharmingen) and sorted using FACS-ARIA II (BD, Pharmingen). The following antibodies were used: anti-CD45 FITC, anti-CD31 FITC, anti-Ter119 FITC, anti-Sca1 Pacific Blue, anti-PDGFRα PE (all purchased from Biolegend); Annexin-V PE (BD, pharmingen).
+ Open protocol
+ Expand
7

Quantifying Myeloid Cell Populations

Check if the same lab product or an alternative is used in the 5 most similar protocols
Flow cytometry was used to quantify myeloid cells, inflammatory and non-inflammatory monocytes, and neutrophils in peripheral blood and in vitro cell migration assays. For blood samples, whole blood was collected from mouse tail vein and suspended in 10 mM EDTA/PBS buffer. Samples were stained with differential fluorochrome-conjugated mAbs against CD11b, Ly-6C and Ly-6G (Major Resources Table) or followed by lysis of erythrocytes with red blood cell lysis buffer for blood samples. Staining data were acquired on a BD FACS Calibur or LRSII flow cytometer with CellQuest or FACSDiva software (BD Biosciences, San Jose, CA) and analyzed using FlowJo software (Ver 10.0.8r1, FlowJo LLC, Eugene, OR). Inflammatory monocytes and neutrophils were identified as CD11b+Ly-6Chigh and CD1b+Ly-6G+ cells, respectively. All data were presented as the percentage of inflammatory monocytes or neutrophils in total leukocytes.
+ Open protocol
+ Expand
8

PBMC Isolation and Stimulation Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
PBMCs were isolated from whole blood using Ficoll (Lymphocyte® Cell Separation Media, Mediatech) gradient centrifugation. Cryopreserved PBMC from HIV-infected subjects were used in the immunophenotyping experiments. The cells were stained with FcRL4-APC and CD19-PE-Texas Red and CD19+FcRL4pos and CD19+FcRL4neg B cells were FACS purified and cultured overnight in the presence of 10 µg/ml CpG-B ODN2006 (TLR9L), 2 µg/ml PAM3CSK4 (TLR2L), or 2 µg/ml Imiquimod (InvivoGen). B cells (CD19+) from healthy controls were purified from PBMC using the B Cell Isolation Kit II (Miltenyi Biotec) and AUTOmacs (Miltenyi Biotec). After 4H, the cultures of CD19+ B cells were supplemented with Brefeldin A (1:1,000, BD). After overnight incubation, the cells were surface stained (CD23-PE-Cy7, BD Biosciences), fixed/permeabilized (Fix/Perm Kit BD Biosciences), and stained for intracellular IL-6 (IL-6-PE, BD Biosciences). All samples were acquired on an LRSII (BD Biosciences) flow cytometer and the data analyzed using FlowJo software (Tree Star Inc.). Florescence parameters were normalized using Rainbow Calibration Particles (Spherotech) and antibody bound CompBead (BD Biosciences). Gating was determined by unstained controls.
+ Open protocol
+ Expand
9

Inducible Cas9 Editing Efficiency Validation

Check if the same lab product or an alternative is used in the 5 most similar protocols
eHAP iCAS9 cells were transduced with the Edit-R inducible lentiviral Cas9 vector (Horizon Discovery) and transductants were selected with blasticidin. Single cell clones were then seeded by limiting dilution in a 96 well plate. Cas9 editing efficiency and Dox regulation was tested as follows. Cells were transduced at a low (∼0.3) multiplicity of infection (MOI) with BFP/GFP Cas9 reporter (Addgene #67980). Cells were split into ± 1μg/mL Dox 24 h following transduction. Dox containing media was replenished 48 h following transduction. Cells were analyzed on LRSII BD Bioscience. BFP positive sells were gated to select cells which had been transduced. The percentage of GFP positive cells was then calculated. Clones were selected that had a low % (< 5%) GFP positive in the +Dox condition to select for high Cas9 editing activity and high % (> 95%) GFP positive in the -Dox condition to select clones with tight regulation (Figure S2K).
+ Open protocol
+ Expand
10

Isolation and Analysis of Mouse Hematopoietic Stem Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were analyzed using LRSII (BD, Pharmingen) and sorted using FACS-ARIA II (BD, Pharmingen). The following antibodies were used: anti-CD45 FITC (clone 30-F11 Biolegend), anti-CD31 FITC (clone MEC13.3 Biolegend), anti-Ter119 FITC (clone TER-119 Biolegend), anti-Sca1 Pacific Blue (clone D7 Biolegend), anti-CD51 PE (clone RMV-7 Biolegend), bio-Lineage panel antibodies [CD4 (clone GK1.5 eBioscience), CD8 (clone 53-6.7 eBioscience), CD3 (clone 145-2C11 eBioscience), Ter119 (clone TER-119 eBioscience), CD11b (clone M1/70 eBioscience), Gr1 (clone RB6-8C5 eBioscience), NK1.1 (clone PK136 eBioscience), B220 (clone RA3-6B2 eBioscience)], anti-ckit APC (clone 2B8 eBioscience), anti-Sca1 PE (clone D7 eBioscience), anti-CD34 FITC (clone RAM-34 eBioscience), anti-SLAM (CD150) PerCP cy5.5 (clone TEC15-12F12.2 Biolegend), anti-Cd11b APC (clone M1/70 Biolegend), and anti-Gr1 PE (clone RB6-8C5 Biolegend).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!