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Facscalibur apparatus

Manufactured by BD
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The FACSCalibur apparatus is a flow cytometry system designed for cell analysis and sorting. It utilizes a laser-based technology to detect and measure various characteristics of cells or other particles in a fluid sample. The FACSCalibur provides quantitative data on the physical and fluorescent properties of individual cells, allowing researchers to analyze and differentiate cell populations.

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52 protocols using facscalibur apparatus

1

Flow Cytometry Assay for ERα Expression

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For assessment of ERα expression by flow cytometry, a total of 2 × 105 Treg cells were cultured for 72 h with various concentrations of ICI 182, 780 (36.7 nM, 367 nM, or 1.8μM), then surface staining with anti-human CD4-PE (clone OKT4, eBiosciences), followed by permeabilization and intracellular staining with rabbit anti-human ERα antibodies (no. ab37438, Abcam). After 30 min incubation, the cells were stained for a further 30 min with goat anti-rabbit IgG-FITC conjugated antibodies (No. F6005, Sigma) and washed in 1x PBS containing 0.1% BSA to remove excess/unbound antibodies. A total of 20,000 cells were acquired using a BD FACS Calibur apparatus and lymphocyte staining for ERα was determined relative to lymphocytes treated with normal rabbit/goat sera.
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2

Phenotypic Profiling of Differentiated RGCs

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Differentiated RGC cells were used for phenotypic marker identification by flow cytometry. Trypsinized cells were resuspended in 100 μL of PBS and incubated with primary antibodies (anti-human CD90) (1:100 dilutions) at 4 °C for 1 h. After washing twice with PBS, labeled cells were resuspended in 100 μL of PBS with 1 μL of the fluorescein isothiocyanate (FITC)-conjugated goat anti-mouse IgG antibody (Millipore) at 4 °C for 1 h. Cells were then analyzed using a BD FACSCalibur apparatus (BD Biosciences, San Jose, CA, USA).
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3

Cytotoxicity Evaluation of Extracts

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The potential cytotoxicity of the extracts was evaluated by a standard flow cytometric probe using propidium iodide (PI) staining. Neutrophils were cultured in 96-well plates in an RPMI 1640 medium (as above) with the presence or absence of the tested extracts at a final concentration of 25–150 µg/mL. After 24 h of incubation, the neutrophils were harvested and centrifuged (1500 RPM, 10 min, 4 °C), washed once with 500 µL of cold (Ca2+)-free PBS, centrifuged again (the supernatant was discarded), re-suspended in 500 µL of PI solution (0.5 µg/mL), and incubated in room temperature for 15 min in the dark. After this time, the cells were analyzed by flow cytometry (BD FACSCalibur apparatus, BD Biosciences, San Jose, CA, USA) and 10.000 events were recorded per sample. Cells that displayed high permeability to PI were expressed as a percentage of PI(+) cells. Cells treated with Triton X-100 solution were used as a control [98.6% of PI(+) cells].
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4

Evaluating Anti-inflammatory Compounds

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Fetal bovine serum (FBS), f-MLP (N-Formylmethionyl-leucyl-phenylalanine), luminol, HEPES solution, RPMI 1640 medium, and L-glutamine were purchased from Sigma-Aldrich Chemie GmbH (Steinheim, Germany). Phosphate-buffered saline (PBS Ca2+-free) and penicillin-streptomycin were purchased from Gibco (Grand Island, USA). Lipopolysaccharide (LPS from Escherichia coli 0111:B4) was purchased from Merck (Kenilworth, USA). Pancoll human was obtained from PAN Biotech (Aidenbach, Germany). Human Quantikine ELISA Kits and propidium iodide were purchased from BD Biosciences (San Jose, USA). Dexamethasone (DEX) and quercetin (QU) (> 95% UHPLC purity) were purchased from Sigma-Aldrich GmbH (Steinheim, Germany). Acetonitrile, methanol, and formic acid for UHPLC were purchased from Merck (Darmstadt, Germany). Water for UHPLC was purified with a Millipore Simplicity System (Bedford, USA). All solvents used for chromatography were of HPLC grade. Absorbance and luminescence were measured using a BioTek microplate reader (Highland Park, USA). Flow cytometry was performed using a BD FACSCalibur apparatus (BD Biosciences, San Jose, USA). Brain-heart infusion broth (BHI) and Mueller-Hinton broth (MH cation-adjusted) were purchased from Becton Dickinson (Franklin Lakes, USA).
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5

Assessing Cellular Immune Response to NH36

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The cellular immune response was assessed using 106 splenocytes that had been cultured in RPMI for 72 h in vitro at 37°C and 5% CO2 in the presence or absence of 5 μg of NH36. The multiparameter analysis (51 (link), 52 (link)) was carried out to assess the intracellular production of IL-2, TNF-α, and IFN-γ cytokines by CD4+ and CD8+ T lymphocytes. For this evaluation, the cells were treated with brefeldin (SIGMA) at a final concentration of 10 μg/ml, incubated for an additional 4 h, and then stained with rat anti-mouse CD4FITC (clone GK1.5) and CD8FITC (clone 53–6.7) monoclonal antibodies (R&D systems, Inc.) and further stained with IFN-γAPC, IL-2-PerCP-Cy5.5, and TNF-αPE monoclonal antibodies (BD-Pharmingen) as described before (48 (link)). For the ICS methods, 100,000 lymphocytes were acquired using a BD FACScalibur apparatus. Data were analyzed using the Cell Quest program. The secretion of cytokines was also evaluated in the supernatants of splenocytes by an ELISA assay as previously described (48 (link)).
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6

Immunomodulatory effects of antileishmanial drugs

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Female BALB/c mice, 8 weeks old, were injected intraperitoneally with daily doses 2.5 mg/Kg of IA, IH, SMIH or Glucantime during five days and euthanized on day 1, 15 and 30 after complete treatment. For evaluation of the T cell response, spleens were removed and splenocytes were incubated for 24 h in vitro with the lysate of 106 stationary phase promastigotes of L. (L.) infantum chagasi (MHOM/BR/1974/PP75), with 25 μg/mL NH36, at 37°C and 5% CO2, during 72 h for the assay of the cytokine expression in the supernatants. Additionally, splenocytes from uninfected BALB/c mice either untreated or previously treated with IA, IH, SMIH or Glucantime were incubated in vitro with 10 μg/mL of each respective drug. For flow cytometry analysis (FACS analysis), splenocytes were incubated for 24 h with the antigens or drugs, labeled with anti-CD4FITC (clone GK1.5), anti-CD8FITC (clone 53–6.7) monoclonal antibodies (R&D systems, Inc) or with rat anti-mouse CD19-PerCP-Cy5.5 and 100,000 lymphocyte counts were acquired using a BD FACScalibur apparatus. Data was analyzed using the Flow-Jo program. The secretion of cytokines was evaluated in the supernatants of splenocytes by an ELISA assay.
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7

Annexin V-FITC Apoptosis Assay

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Apoptosis was detected with annexin V-FITC assay (BD Pharmingen, San Diego, CA, United States) according to manufacturer’s instructions. A375 cells were seeded in 35 mm culture dishes and allowed to attach overnight. The cells were treated with NAP-HBTA (100 μM) for 24-48-72 h. To detect early and late apoptosis, both adherent and floating cells were harvested together, washed twice with PBS and resuspended in annexin V binding buffer at a concentration of 106 cells/mL. Subsequently, 5 μL of FITC-conjugatedAnnexin V and 5 μL of PI were added to 100 μL of the cell suspension (105 cells). The cells were incubated for 20 min at room temperature in the dark and subsequently analyzed using a two-laser equipped FACSCalibur apparatus and the CellQuest analysis software (Becton Dickinson, Mountain View, CA, United States).
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8

Quantification of Homologous Recombination Efficiency

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A Schematic diagram of HR repair assay is shown in Supplementary Fig. 1a. DR-GFP, pCAGGS, and pCBASce plasmids were kindly provided by Dr. Maria Jasin (Memorial Sloan-Kettering Cancer Center, New York, NY). U2OS cells containing a single copy of the HR repair reporter substrate DR-GFP in a random locus were generated as previously described12 (link). GFP-expressing plasmid (pEGFP-C1) was used for transfection efficiency control. Twenty-four hours after ZNF668 siRNA, TTK plasmid, or BRCA1 siRNA transfection, cells were re-seeded; the next day, cells were transfected with pCBASce plasmids. For cell lines that do not stably contain the DR-GFP plasmid, 1×106 cells were electroporated with 12 μg of DR-GFP and 12 μg of pCBASce plasmids at 270V, 975uF using a BioRad genepulsar II45 (link). 48 to 72 hours later, flow cytometry analysis was performed to detect GFP-positive cells using a FACScalibur apparatus with CellQuest software (Becton Dickinson, San Jose, CA). Unless otherwise specified, results were mean + SD from three independent experiments.
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9

Murine Antibody Response to BHK Cells

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Mice were stimulated with intraperitoneal injection of baby hamster kidney (BHK)-570 cells (LGC Standard, ATCC®, Molsheim, France; 5.106 cells in RPMI-medium, 200 μl per mice), and the production of IgM and IgG against the hamster cells was analyzed on days 3, 5, 7, and 10 postimmunization. For analysis of the IgM and IgG titer in the murine sera, 5.105 BHK-570 cells were dispatched per well in a 96-well V-bottom plate and 5 μl of serum sample was added. After incubation of 30 minutes on ice, BHK-570 cells were washed two times with PBS. Secondary antibody (goat anti-mouse IgM antibody-PE or goat anti-mouse IgG antibody-FITC, Biolegend, ImTec Diagnostics N.V. Antwerp, Belgium) was added and incubated for 30 minutes on ice and protected from light. After 3 washes with PBS, IgM and IgG were assessed by flow cytometry with the 3-color Becton Dickinson FACSCalibur apparatus. Ig titer is expressed as mean fluorescence intensity (MFI).
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10

Immunofluorescent Staining of Cells

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Cells were detached with cell dissociation buffer (Invitrogen), rinsed in PBS before incubation in blocking buffer (PBS, 3 % BSA, 1 % NaN3) for 15 minutes. Subsequent staining using 10 μg/ml anti-HA tag (CRUK), 10 μg/ml anti-CLEC14A (C2, C4 described below), as primary antibodies, in blocking buffer for 30 minutes. Cells were rinsed in PBS and stained with goat polyclonal anti-mouse IgG conjugated to Alexa Fluor488 (Invitrogen) in blocking buffer. Data (15,000 events/sample) were collected using a FACSCalibur apparatus (Becton Dickinson, Oxford, UK), and results were analysed with Becton Dickinson Cell Quest software.
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