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11 protocols using donkey anti goat igg h l

1

Retinal Inflammation Profiling via Immunohistochemistry

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Eyes were removed and fixed in 4% paraformaldehyde (PFA) for 30 min. Retinae were harvested and incubated with primary and secondary antibodies, and then washed in PBST and flat mounted. The primary antibodies include anti-Iba-1 antibody (Wako Chemicals, Osaka, Japan), anti-RIP1 antibody (BD Bio-Sciences, Bedford, MA, USA), anti-CD11b, anti-TNF-α and anti-RIP3 antibodies (Abcam, Cambridge, MA, USA), anti-TLR2 antibody (Genway Biotech Inc., San Diego, CA, USA), and anti-TLR4 antibody (Santa Cruz Biotechnology Inc., Santa Cruz, CA, USA) and anti-CCL2 antibody (Novus Biologicals, Littleton, CO, USA). The secondary antibodies include donkey anti-rabbit IgG H&L (Alexa Fluor 488, 555), donkey anti-mouse IgG H&L (Alexa Fluor 405, 555) and donkey anti-goat IgG H&L (Alexa Fluor 555, 647) antibodies (Abcam). Primary antibodies were diluted at 1 : 100 for usage, and the secondary antibodies were applied at 1 : 1000 in dilution. In each group, six retinal flat mounts were performed and observed under a confocal microscope (Carl Zeiss LSM710, Jena, Germany).
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2

Binding Affinity Evaluation of Nectin-4 Antibodies

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NCI-N87 cells and 293T-human-Nectin-4 cells were plated at a density of 1 × 105 cells per well in a 96-well plate and subsequently washed. huNb26/Nb26-Nbh and Nectin-4 NDC were diluted in PBS containing 2% FBS and added to the 96-well plate, followed by incubation with cells at 4℃ for 30 min. Following cell washing, 100 µL of goat poly-antibody (Novamab) was added to each well and incubated at 4℃ for 30 min. Subsequently, 100 µL of donkey anti-goat IgG H&L (Abcam) was added to each well, and the cells were incubated at 4℃ for another 30 min. Finally, the cells were resuspended for flow cytometry analysis.
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3

Immunofluorescence Analysis of hPGCLC Aggregates

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Day 4 hPGCLC aggregates were fixed in 4% PFA for 20 min at room temperature. After PBS washes and incubation in 30% sucrose, aggregates were embedded in OCT (VWR, 361603E) and sectioned at a thickness of 10 μm. Samples were permeabilized for 20 min in PBS/0.2% Triton X100 (PBST) and blocked for 1 h in blocking solution (Santa Cruz, sc-516214). Samples were then incubated with the following primary antibodies diluted in blocking buffer at room temperature for 2 h: anti-OCT4 (1:200, catalog no. ab181557; Abcam); anti-TFAP2C (1:100, catalog no. sc-12762; Santa Cruz); anti-SOX17 (1:200, catalog no. AF1924; R&D). After PBS washes, samples were incubated with the following secondary antibodies diluted 1:1000 in PBS: Donkey anti-rabbit IgG (Alexa Fluor 594, catalog no. A21207; Invitrogen); Donkey Anti-Goat IgG H&L (Alexa Fluor 488, catalog no. ab150129; Abcam); Donkey anti-Mouse IgG (H&L) (Alexa fluor 594, catalog no. R37115; Life Technologies). Sections were then washed with PBS and incubated for 10 min with DAPI. A coverslip was then placed on the slides in Vectashield vibrance (Vector Labs, H-1800-10). Sections were imaged using the SP5 inverted confocal microscope (Leica).
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4

Quantitative Western Blot Analysis of PDK4 Expression

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Equal amounts of protein (30 μg per lane) were subjected to 4–20% SDS-PAGE and then transferred to PVDF membranes. After blocking with 5% non-fat dry milk for 1.5 hours at room temperature, the membranes were incubated at 4 °C overnight with the following primary antibodies: pyruvate dehydrogenase kinase-4 (PDK4; 1:1000; NOVUS Biologicals) and β-actin (1:4000; Santa Cruz Biotechnology). The membranes were washed thrice for 10 min each with PBST at room temperature. Subsequently, the membranes were incubated with goat anti-rabbit IgG H&L (HRP; 1:1000; Abcam), donkey anti-goat IgG H&L (HRP; 1:1000; Abcam), or goat anti-mouse IgG H&L (HRP; 1:1000; Abcam) secondary antibodies for 2 hours at room temperature, and signals were visualized using an ECL detection system (Amersham Pharmacia Biotech, Inc.). The results were quantified by densitometric analysis using Image J.
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5

Neonatal Cardiomyocyte Proliferation Assay

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Cell proliferation was determined by Ki67 immunostaining. Neonatal CMs were seeded at 1×104 cells/well in 24-well plates and cultured under normoxic conditions (37°C, 5% CO2, 5% O2) for 7 days. The proliferating cells were detected by double staining with Ki67 and TnI. Briefly, the cells were fixed in 4% paraformaldehyde, blocked with 5% BSA after 10 min of permeabilization, and incubated with primary antibodies [Ki67 (ab16667), TnI (ab30807) both from Abcam] overnight followed by the respective fluorescent conjugated secondary antibodies [donkey anti-rabbit IgG H&L (DyLight 488; ab96891); and donkey anti-goat IgG H&L (DyLight 550; ab96932); both from Abcam]. After 3 washes with PBST, the cell nuclei were stained with Hoechst 33258 pentahydrate 1 µg/ml (Invitrogen). Fluorescence images were then acquired using a Leica fluorescence microscope.
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6

Calcium Silicide-Iodine Electrode Fabrication

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Calcium silicide (CaSi2, 95%, Gelest), iodine (I2, 99.99%, Sigma‐Aldrich), acetonitrile (CH3CN, 99.8%, Sigma‐Aldrich), 1‐methyl‐2‐pyrrolidinone (NMP, 98%, Sigma‐Aldrich), double distilled water (Milli‐Q system, Millipore, USA), hexadecyltrimethylammonium chloride (CTAC, 99%, Adamas), triethylamine (TEA, 99%, Adamas), tetraethyl orthosilicate (TEOS, SiO2 iOrolidinGreagent), ethanol absolute (C2H6O, ≥ 99.7%, Shanghai Lingfeng Chemical Reagent Co. Ltd), hydrochloric acid (HCl, 36.0–38.0%, Shanghai Lingfeng Chemical Reagent Co. Ltd), and RP hydrochloride monohydrate (Adamas, 99%) were used. Antibodies which were used included Iba‐1 (WAKO, 019–19741), GFAP (Abcam, ab53554), TRPV1 (Abcam, ab5566), c‐Fos (CST, 2250S), Donkey Anti‐Rabbit IgG H&L (Abcam, ab150073), and Donkey Anti‐Goat IgG H&L (Abcam, ab150132). All chemicals used in slice preparation and electrophysiological recording were purchased from Sigma‐Aldrich.
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7

Hypothalamic ARC Protein Expression

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The hypothalamic ARC tissues of rats in each group were homogenized using frozen RIPA lysis buffer and protease inhibitors. After ensuring complete tissue lysis, the solution containing total proteins was obtained by centrifugation, and the protein concentration was determined using the BCA protein detection kit (Thermo Fisher, USA). Electrophoresis was performed, and the separated samples were transferred via a membrane. To this membrane, the primary antibody solutions of Kiss1 (1:1000, Thermo Fisher, USA), Kiss1r (1:1000, Thermo Fisher, USA), AR (1:1000, Novus, USA), and ERα (1:1000, Novus, USA) were added and incubated overnight at 4 °C. Then, the secondary antibody donkey anti-goat IgG-H&L (1:3000, Abcam, UK) was added, and the protein antibody complexes were visualized using the ECL Chemiluminescence Visualization Kit (Servicebio, Wuhan, China). After the exposed film was developed and fixed, it was arranged using PhotoShop. The Alpha software (Innotech alphaEaseFC, USA) processing system was used to analyze the gray value of the target protein. The relative expression of Kiss1, Kiss1r, AR, and ERα was calculated by comparing the gray value ratio to the internal reference glyceraldehyde-3-phosphate dehydrogenase (GAPDH).
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8

Dual-Labeling Immunofluorescence for RIP5 and VGLL4

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All tissue sections were deparaffinized in xylol, dehydrated in graded ethanol dilutions, and washed three times in desilted water. The sections were heated in citrate buffer for antigen retrieval for 15 min. After cooling, tissue sections were incubated with the combination of primary antibodies RIP5 (N-16) (diluted 1:50, Santa Cruz Biotechnology, Santa Cruz, CA, USA, sc 162109) and VGLL4 (diluted 1:50, Invitrogen, Waltham, MA, USA PA5-58467) overnight at +4 °C. Primary antibodies were washed in PBS three times and incubated with a combination of secondary antibodies: Goat Anti-Rabbit IgG H&L (Abcam, Cambridge, UK, Alexa Fluor® 594) (ab150080) and Donkey Anti-Goat IgG H&L (Abcam, Cambridge, UK, Alexa Fluor® 488) (ab150129) in Dako Antibody Diluent (Dako, Glostrup, Denmark, S0809) for 1 h at room temperature. After incubation with secondary antibodies, sections were washed in PBS three times, counterstained with DAPI, and coverslipped (Immuno-mount, Shandon Inc., Pittsburgh, PA, USA).
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9

Investigating TFEB and Lysosomal Pathways

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The IHC antibody anti-TFEB (ab2636) was purchased from Abcam. Western-blot antibodies, including anti-LAMP1 (sc-20011, Santa Cruz Biotechnology), anti-LC3 (3,868, Cell Signaling Technology), anti-p-P65 (3,033, Cell Signaling Technology), anti-P65 (8,242, Cell Signaling Technology), anti-p-S6 (4,858, Cell Signaling Technology), anti-S6 (2,217, Cell Signaling Technology), anti-p-4EBP1 (2,855, Cell Signaling Technology), anti-4EBP1 (9,452, Cell Signaling Technology), anti-Actin (3,700, Cell Signaling Technology), anti-Histone H3 (ab1791, Abcam), donkey Anti-Goat IgG H&L (FITC, ab6881), and goat anti-rabbit IgG H&L (HRP, ab6721) were purchased from Abcam. DAPI (d9542) and LPS (L6386) were purchased from Sigma Aldrich.
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10

Detection of Influenza Viral Proteins

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Anti-influenza A virus M2 monoclonal antibody (14C2; Abcam), anti-murine IL-12 (p70) polyclonal antibody (PeproTech), monoclonal anti-IL-12 antibody (Purified Rat Anti-Mouse IL-12 [p40/p70]; Becton, Dickinson and Company), and anti-HA (H1N1/California/06/2009) polyclonal antibody (Immune Technology Corp.) were purchased and used for Western blotting analysis and the FA assay. Antisera against swine IAH1, HKH5, and AnH7 viruses prepared from mice immunized with three doses (2,048–4,096 HA units) of purified viruses were also used for the detection of H5 or H7 HA proteins.
Antibodies against MPO (Agilent Technology) and Iba1 (Fujifilm Wako Pure Chemical Co.) were used for immunostaining for histological examination.
As secondary antibodies, goat anti-mouse IgG heavy and light chain cross-adsorbed antibody HRP-conjugated (Bethyl Laboratories, Inc.), goat anti-rabbit IgG H&L (Abcam), donkey anti-goat IgG H&L (HRP; Abcam), anti-mouse IgG (H + L) F(ab’)2 fragment (Alexa Fluor 488 conjugate; Cell Signaling Technology), and donkey anti-goat IgG H&L (Alexa Fluor 555; Abcam) were used. Anti-N2 NA monoclonal antibody specific to the influenza A virus was purchased from Tokyo Chemical Industry Company. To identify the N2 NA, anti-Aichi/2/68 (H3N2) virus serum was also used in the examination.
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