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9 protocols using egmtm 2 bulletkittm

1

Macrophage Activation and Mesangial Cell Response

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A murine mesangial cell line, Mes13, was obtained from American Type Culture Collection (ATCC, Manassas, VA). Mes13 cells were cultured with Dulbecco’s Modified Eagle Medium (DMEM) containing high glucose/Nutrient Mixture F-12 Ham supplemented with 10% fetal bovine serum (FBS). Human umbilical vein endothelial cells (HUVEC) were cultured with EGMTM-2 BulletKitTM (Lonza, Basel, Switzerland). An adherent macrophage cell line, Raw 264.7, was obtained from ATCC and were cultured with DMEM containing high glucose concentration with 10% FBS at 37 °C under 5% CO2. For the analysis for M1/M2 macrophage subtype transition by CTGF or TNF-α, RAW264.7 cells were stimulated with vehicle or 1000 ng/ml CTGF (PROSPEC, East Brunswick, NJ) in DMEM without FBS, and then harvested 3 h after stimulation. Stimulation with 10 ng/ml recombinant mouse TNF-α (R&D systems, Minneapolis, MA) was performed at the same protocol, and collected at 3 h. To examine mRNA expression of Ccl2 in mesangial cells, Mes 13 cell were stimulated with 1 ng/ml TGF-β1 and/or 500 ng/ml CTGF, and then harvested 3 h after stimulation.
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2

Cell culture protocol for bladder cancer and HUVEC

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The human bladder carcinoma cell lines, 5637 and T24, were purchased from the American Type Culture Collection (Manassas, VA, USA) and maintained in Dulbecco’s modified Eagle medium supplemented with 10% fetal bovine serum (FBS), 100 U/mL penicillin, and 100 μg/mL streptomycin at 37 °C in a 5% CO2 humidified incubator. The 5637 cells were referred to as MGH-U1 cells. Additionally, primary human umbilical vein endothelial cells (HUVECs) were obtained from Lonza (Walkersville, MD, USA). Cells were grown on plates coated with 0.1% gelatin (Sigma, San Diego, CA, USA) in endothelial basic medium (EBM) and cultured in endothelial growth medium-2 (EGMTM 2) BulletkitTM (Lonza) at 37 °C in a 5% CO2 humidified incubator. All experiments were performed between passages 2 and 5.
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3

Pravastatin's Effects on HUVECs

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Human umbilical vein ECs (Pooled HUVECs, Lonza) were grown in the EC growth medium supplemented with growth factors, 5% fetal bovine serum (FBS), and antibiotics (EGMTM‐2 BulletkitTM; Lonza) at 37oC and 5% CO2. Passage 4–6 HUVECs were used for the experiments. Cells were (60%–70%) confluent and were starved over‐night in MCDB‐131 basal medium with 1% FBS, followed by treatment with pravastatin sodium salt hydrate (10 µM; Sigma) (Abe et al., 2006; Panczel et al., 2019) in the same MCDB‐131 basal medium with 1% FBS for 24 hr. Controls were treated with vehicle phosphate‐buffered saline. To validate the expression level of top up‐ or downregulated lncRNAs and mRNAs, HUVECs were cultured and treated as previously described.
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4

Quantifying IL-5 Levels in HUVEC Cultures

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HUVECs were cultured with endothelial basic medium (EBM) and EGMTM-2 BulletkitTM (Lonza). Aliquots of the cell culture supernatant were separated and subjected to assay for the levels of IL-5 using a Human IL-5 Immunoassay kit (R&D Systems, Minneapolis, MN). Supernates from human peripheral blood mononuclear cells (PBL) were supplied by the kit, and used as a positive control.
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5

Valproic Acid Effects on Endothelial Cells

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Human umbilical vein ECs (HUVECs, Lonza), human coronary artery ECs (HCAECs, Lonza) and human dermal microvascular ECs (HMVECs) were grown in EC growth medium-2 (EGMTM-2 BulletkitTM; Lonza) containing growth factors or MCDB 131 (Gibco) supplemented with serum and antibiotics. After reaching 60–70% confluence, cells were starved over-night and then treated with 1, 2, 5, 10, and 20 mM of Valproic Acid (Santa Cruz Biotechnology). Control group were treated with the diluent. In order to determine the role played by TGFβ-signaling in our experimental setting, following starvation, HUVECs were pre-treated with 5 μM TGFβ-signaling inhibitor SIS3 (Calbiochem), which is a specific inhibitor of SMAD3 (Jinnin et al., 2006 (link)) for 2 h, prior to 5 mM of VPA treatment for an additional 24 h.
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6

HUVEC Proliferation Assay with siRNA

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HUVECs were first cultured in endothelial cell growth medium-2 (EGMTM-2 BulletkitTM; Lonza) supplemented with growth factors, serum and antibiotics at 37°C in humidified 5% CO2, and seeded at a density of 1–2×104 cells/well in 96-well plates, transfected with sieNOS (5 nmol) or scrambled control (5 nmol), and then cell proliferation was evaluated 24, 48 and 72 hrs post-transfection using WST-8 Cell Proliferation Assay Kit (Cayman Chemicals) as described [15 (link)]. HUVECs were transfected in a 6-well plate (1.5–2×105 cells/well) with either sieNOS or scrambled control and cells were counted using CytoSmart cell counter 24, 48 and 72 hrs post-transfection. Cells were counted in triplicates for each biological replicate and average cell number was determined for each sample.
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7

Silencing eNOS in Endothelial Cells

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Human umbilical vein or human pulmonary artery endothelial cells (HUVECs or HPAECs, pooled, Lonza; passage 4–6) were cultured in endothelial cell growth medium-2 (EGMTM-2 BulletkitTM; Lonza) supplemented with growth factors, serum and antibiotics at 37°C in humidified 5% CO2. siRNA-mediated eNOS gene knockdown was performed with sieNOS or scrambled control in accordance with the manufacture’s guidelines. A standard reverse transfection reagent (Lipofectamine ® 3000, Invitrogen), and 5 nm sieNOS [DharmaconTM: Cat # 106158 (sieNOS) or #106159 (sieNOS#)] or scrambled control (DharmaconTM: Cat # 2575450) were used. RNA or protein were collected using Trizol reagent (Invitrogen) or RIPA buffer, respectively, following 24, 48 or 72 hrs post-transfection.
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8

Scratch Assay for Endothelial Cell Migration

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HUVECs were cultured in endothelial cell growth medium-2 (EGMTM-2 BulletkitTM; Lonza) supplemented with growth factors, serum and antibiotics at 37°C in humidified 5% CO2 and transfected with sieNOS (5 nmol) or scrambled control (5 nmol), and seeded at a density of 2 x 105 cells/well in a 6-well plate and allowed to grow to 60–80% confluency. Each well was then administered a consistent straight scratch using p1000 pipette tip. Cells were then washed with 1X PBS for one time and incubated in DMEM supplemented with 1% FBS. Phase-contrast microscopy using an adapted camera (Optika) was employed to take pictures of cells in each well migrating into the scratch over 3 time points (0, 8 and 20 hrs) to evaluate for migrating capacity as described [16 (link)].
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9

Primary HUVEC Cell Culture Protocol

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Primary HUVECs were obtained from Lonza (Walkersville, MD, USA). Cells were maintained on plates coated with 0.1% gelatin (Sigma, San Diego, CA, USA) in endothelial basic medium (EBM) and were maintained in EGMTM-2 BulletkitTM (Lonza) at 37 °C in a 5% CO2 humidified incubator. All experiments were carried out between passages 2 to 5. The cells have been used finished the mycoplasma contamination test.
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