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Gatan microscopy suite

Manufactured by Ametek
Sourced in United States

The Gatan Microscopy Suite is a comprehensive software platform designed to enhance the capabilities of electron microscopes. It provides a unified interface for instrument control, data acquisition, and analysis. The software supports a wide range of electron microscopy techniques, enabling users to perform advanced imaging, spectroscopy, and diffraction analyses.

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7 protocols using gatan microscopy suite

1

Quantifying CHIK Virus in Mosquito Midgut

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In each TEM micrograph, CHIK virions were counted and the surface area of the tissue containing virions was determined based upon the pixel size of each image using the software Gatan Microscopy Suite (Gatan). At least 18 TEM micrographs from three different midgut preparations were analyzed per time point. Thickness of the intact midgut BL was measured in several locations of three different midguts per time point. Measurements were conducted in zones absent of muscle tissue where the BL was often spliced and disorganized. BL measurements were based on the pixel size of each image as analyzed with the Gatan Microscopy Suite.
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2

Transmission Electron Microscopy of Cells

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Cells on filters were fixed with 3% glutaraldehyde in phosphate buffer 0.2 M (pH 7.2) and were then embedded in epoxy resin. Samples were examined with a transmission electron microscope (JEOL 1011, JEOL Europe SAS, Croissy-sur-Seine, France) at the Cochin Institute electron microscopy facility using a GATAN eslangshen camera and the Digital Micrograph software (Gatan Microscopy Suite, Gatan Inc., Pleasanton, CA, USA).
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3

Quantitative Immunogold Electron Microscopy

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EM was performed following our previously reported procedure with no modification (37 (link)). The anti-StAR, anti-GRP78, anti-Caln, and anti–aldosterone synthase antibodies were diluted 1:1000 in PBS containing 0.4% BSA. Anti-Tom22 was diluted 1:500 in the same solution. Semiquantitative analysis was performed on all grids, with each image divided into 16 quadrants for counting the number of gold particles. To avoid any error, we counted each image five times, and SD was determined. Results were expressed as the number of gold particles per field of view. Field of view sizes were calculated using the quantitation function of the Gatan Microscopy Suite software (Gatan Inc.).
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4

Characterization of Polyester-based Photothermics

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The sizes of the TBNRs were analyzed using the Gatan Microscopy Suite (Gatan Inc., Pleasanton, CA, USA) for images measured through FE-TEM (FEI Tecnai G2 F30 S-Twin). Ultraviolet–visible (UV–Vis) absorption spectra were obtained using a UV–Vis spectrometer (V-670, JASCO, Tokyo, Japan) in the range of 300–2100 nm. To determine the influence of TBNRs on the photothermal effect of polyester, the surface temperature change upon irradiation with a solar simulator with white light (100 W, PEC-L01, Peccell Technologies Inc., Yokohama, Japan) was measured. The values of L*, a*, b*, and ΔE were measured thrice in a colorimeter (AMT507) for each of the samples, and the elemental analysis of the samples was carried out by performing field emission scanning electron microscopy with energy dispersive X-ray spectroscopy (FE-SEM–EDX, JSM6701, JEOL, Japan) on the samples (Fig. 1). To compare the tensile properties of the samples before and after finishing, the tensile strength was measured using a tensile strength tester in the warp direction of the fabric according to the ravel strip method (KS K 0520). The test was carried out by preparing a rectangular polyester sample of size 2.5 × 15 cm2.

Chemical structure of 3-(trimethoxysilyl)propyl methacrylate(TMSPMA)

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5

Negative Stain TEM Protein Visualization

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Protein samples were visualized by negative-stain transmission electron microscopy. Concentrations were 100 μg/mL of protein for samples diluted in water and 50 μg/mL of protein diluted in TEN buffer. A glow-discharged formvar/carbon-coated 400 mesh copper grid (Ted Pella, Inc., Redding, CA) was floated on a 20 µl droplet of the sample suspension for 10 min, transferred quickly to 2 drops of deionized water followed by a droplet of 2% aqueous uranyl acetate stain for 1 min. The grid was blotted with filter paper and air-dried. Samples were observed using a JEOL JEM1230 transmission electron microscope operating at 80 kV (JEOL USA INC., Peabody, MA) and images were taken using a Gatan Orius SC1000 CCD camera with Gatan Microscopy Suite version 3.10.1002.0 software (Gatan, Inc., Pleasanton, CA).
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6

Cryo-EM Imaging of Augmin TIII Tetramer

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4 µl of purified augmin TIII tetramer were applied on Cu R2/1 holey carbon grids (200 mesh; Quantifoil Micro Tools, GmbH) with or without a layer of continuous carbon (2 nm). Grids were glow discharged beforehand using a Gatan Solarus 950 (Gatan, Inc.) plasma cleaner for 30 s. The grids were blotted for 0.5 s at room temperature and 85% relative humidity and plunge frozen in liquid ethane using a Vitrobot Mark IV (Thermo Fisher Scientific). Screening of the grids showed better distribution of particles on grids with continuous carbon layer, which accordingly were selected for high-resolution data acquisition. Data were acquired in one session on a Titan Krios G1 (Thermo Fisher Scientific) operated at 300 kV, equipped with a K3 camera operated by Gatan Microscopy Suite (version 3.32, Gatan, Inc.) and a Quanta energy filter. Data were acquired in dose fractionation mode (30 frames) at a pixel size of 1.07 Å with a cumulative dose of 68.9 e-2 and a dose rate of 27.9 e-/px/s. Data were acquired in EPU (version 2.6, Thermo Fisher Scientific) using aberration free image shift (AFIS) with 4 images per hole and a nominal defocus range of −1 to −3 µm.
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7

Transmission Electron Microscopy of Exosomes

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Freshly purified exosomes were diluted with DPBS and 4 µL volume was deposited on formvar coated 200 mesh copper grids. After 2 min, grids were blotted dry on Whatman filter paper #1. The grids were inverted over a drop of 2% aqueous uranyl acetate. After 2 min, grids were blotted dry on Whatman filter paper #1, and air dried. All grids were examined under transmission electron microscope, FEI Tecnai G2 Spirit BioTWIN (FEI Company, Hillsboro, Oregon, USA) at an acceleration voltage of 80 kV and digital images were captured with scale bar using a GATAN digital imaging system (Gatan, Inc., CA). Exosome size was measured using GATAN microscopy suite (Gatan, Inc., CA). The diameter of 120 exosomes per sample was manually marked and calculated using “line annotation with length” standard tool of GATAN software. The diameter of UD-P19 and P19N exosomes was analyzed using unpaired two-tailed t-test (GraphPad Prism, version 9.2.0).
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