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9 protocols using bsa stain buffer

1

PBMC and Lymph Node Cell Phenotyping

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Peripheral blood mononuclear cells (PBMCs) and dissociated lymph node cells (cryopreserved or freshly dissociated) were resuspended in flow cytometry staining buffer (Stain Buffer BSA, BD Biosciences 554657) containing Human Seroblock Fc Blocking Reagent (Bio-Rad BUF070B), incubated for 10 min at room temperature, then stained for 30 min at 4°C with fluorescently labeled antibodies and reagents for cell surface proteins (see online supplemental material for additional details). Samples were washed three times with staining buffer prior to their acquisition on an A3 Symphony Flow Cytometer (BD Biosciences). Flow cytometry data were analyzed using the FlowJo analysis software (BD Biosciences).
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2

Quantification of PD-L1 Expression

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After 24 h of BMS-202 treatment in combination with 500 IU/ml IFN-γ stimulation (peprotech, USA), U251 cells (1.5 × 105) in six-well plates were trypsinized and centrifuged for 5 min at 4 °C. Then, after washing the cells in Stain Buffer BSA (BD Pharmingen, USA), 20 μl of anti-PD-L1 (BD Pharmingen, USA) was added with an equal volume of bovine serum albumin (BSA) and incubated on ice for 30 min in the dark. Subsequently, the cells were filtered through a 250-μm nylon mesh, washed twice with BSA, and analyzed by flow cytometry (BD FACS Aria III cell sorter, USA) within 1 h.
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3

Multiparametric Flow Cytometry Panel

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Cells were resuspended in PBS and stained on ice for 30 minutes in the dark with a fixable viability stain (BD Bioscience). Then, cells were resuspended into the stain buffer (BSA) (BD bioscience) and stained on ice for 30 minutes with various combinations of directly fluorochrome-conjugated antibodies. Antibodies used for flow cytometry were from BD Biosciences, Biolegend, or ThermoFisher, and include CD45 APC-Cy7 (clone 30-F11), CD8a BUV737 (clone 53-6.7), TCRb PE (clone H57-597), CD4 BUV395 (clone RM4-5), CD25 BV711 (clone PC61), CD11b AF700 (clone M1/70), Ly6G PercpCy5.5 (clone 1A8), CD11c PeCy7 (clone N418), Nkp46 FITC (clone 29A1.4), F4/80 PE-CF594 (clone T45-2342) Ly6C BV421 (clone AL-21), CXCR3 APC (clone CXCR3-173), Class I MHC FITC (clone 34-1-25) and PD-L1 BV421 (clone MIH5). For all samples, acquisition was performed on Fortessa flow cytometer (BD). Data were analyzed using FlowJo software (Tree Star).
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4

CD34 Expression in HUVECs

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HUVECs were harvested with trypsin–EDTA. All immunofluorescent labeling and washing was performed in Stain Buffer (BSA) (BD Biosciences). Cells were incubated with an irrelevant isotype control or the mouse antihuman CD34 antibody (5 µg/mL, QBEND/10) for 1 h at 4 °C. After 3 times washing with cold Stain Buffer, FITC-conjugated goat antimouse IgG (1:100, Jackson ImmunoResearch) were added to the cells for 45 min in the dark at 4 °C, followed by washing. Flow cytometry analysis was performed using a FACSCalibur system (BD Biosciences) in combination with CellQuest software (BD Biosciences).
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5

Single-Cell Flow Cytometry of Murine Lungs

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Lungs were collected from mice, ensuring no lymphatic tissue was attached, and single-cell suspensions were prepared according to the manufacturer's instructions (Miltenyi Biotec GmbH, 2008). Cells were blocked with CD16/CD32 Fc block (BD Biosciences, 553141) for 30 minutes and stained with cell maker-specific antibodies (Supplementary Table 1) for 20-30 minutes. Staining and washing steps were performed with BSA stain buffer (554657, BD Biosciences). Samples were acquired on a BD FACSAria III (time-course figure 1) or BD LSR Fortessa flow cytometer (all other data) using FACSDiva software versions 8.01 and 9.01 (BD Biosciences). Unstained cells and single-stained compensation beads (BD Biosciences, 552843) were used for compensation of samples. Generally, 3-5x10 6 events were acquired for each sample.
(which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission.
The copyright holder for this preprint this version posted October 26, 2020. ; https://doi.org/10.1101/2020.10.25.354464 doi: bioRxiv preprint
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6

Immunofluorescent Staining of Kupffer Cells

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To visually confirm KC enrichment in elutriated fractions and KC localization within HKCCs, KC monocultures and HKCCs were stained with antibodies against CD68 and CD163. Cultures were activated with LPS (1 (μg/mL) for 48 h after 24 h acclimation. Cells were fixed and permeabilized with ice-cold methanol. Cultures were washed 2 times with Dulbecco's PBS and blocked using BSA Stain Buffer (BD Pharminogen) containing diluted Hoechst 33342 nuclear dye (Thermo Fisher). Individual wells were probed for CD68 or CD163 using mouse anti-rat primary antibodies (AbD Serotec) incubated for 6 h at 4°C. Cultures were washed and incubated with a goat anti-mouse AlexaFluor 488 secondary antibody (Thermo Fisher) for 1 h at room temperature. After washing, cells were visualized with the EVOS FL Cell Imaging System (Thermo Fisher).
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7

Multiparametric Flow Cytometry of PBMCs

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Cells were washed in 150 μL of BSA Stain Buffer (BD Biosciences) in preparation of phenotype staining. 50μL of Fc Block cocktail (composed of Fc Block [Biolegend], Live Dead Near IR Fixable Viability Stain (Thermo Fisher), BSA Stain Buffer) was added to each sample and incubated for 10 min at room temperature. After the incubation period, cells were stained with a monoclonal antibody cocktail containing CD19-PacBlue, CD45-PE, CD45RA-FITC, CD4-PerCP-Cy5.5, CD16-PE, CD56-PE, CD19-PE-Cy7, and CD3-APC. All antibodies were received from Biolegend and diluted at a 1:50 ratio in BSA Stain Buffer. Following a 30-min staining period at 4 °C, samples were washed by centrifuging at 400 x g for 5 min (room temperature) and resuspended in BSA Stain Buffer. Following the third centrifugation step, PBMCs were resuspended in BSA Stain Buffer and 16% PFA was added to each sample for a final concentration of 1.6% PFA. After a 10-min fixation period at 21 °C, cells were washed and resuspended in BSA Stain Buffer for flow cytometry acquisition.
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8

Cetuximab and SPION Binding Assay

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A total of 6×104 cells were seeded in each well of an 8-well chamber slide (Millicell EZ slide, Millipore) and cultured overnight to allow adherence of the cells. The cells were fixed with 4% formaldehyde on ice for 20 minutes. After three washes, the cells were blocked with 0.2% (w/v) BSA stain buffer (BD Bioscience Pharmingen, San Diego, CA, USA) at room temperature for one hour. The cells were incubated with 100 μL of cetuximab and SPIONs diluted in 0.2% BSA stain buffer at the indicated concentrations on ice for one hour. Cells treated with 0.2% BSA stain buffer alone served as a negative control. After three washes, Dylight 488-conjugated goat F(ab′)2 anti-human Fcγ secondary antibody diluted in 0.2% BSA stain buffer was added to detect the bound cetuximab. After a one-hour incubation at room temperature, the cells were stained with 300 nM DAPI nucleic acid staining solution (Molecular Probes, Life Technologies Co) and rinsed several times with 1× PBS. After mounting with ProLong® Diamond antifade mountant (Molecular Probe), the slides were observed using a fluorescence microscope with the appropriate filters.
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9

Multiparameter Analysis of Signaling Pathways in Leukemia Cells

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2 × 106 BM cells obtained from MLL-ALL engrafted recipients (MLL-AF4; Pt.2, 4, MLL-ELN; Pt.8, MLL-AF9; Pt.10, 11, 12, 13), non-MLL ALL engrafted recipients (Ph+ ALL; Pt. 15, TEL-AML; Pt.16, t(5;15); Pt.18, unknown karyotype; Pt.19) or freshly isolated normal CD34+ cord blood cells were fixed using Lyse/Fix buffer 5x (BD, 558049) at 37 °C for 10 min then permeabilized using Phosflow Perm Buffer III (BD, 558050) at −30 °C for 30 min. Non-specific background was blocked with BSA stain buffer (BD, 554657) and Fc receptors were blocked by incubating cells in 1% mouse Fc Block (BD, 553142) at 4 °C for 5 min. Cells were then stained for surface markers hCD45, mCD45 and intracellular proteins pNF-κB (pS529), pAkt (pS473), pS6 (pS235/pS236) and p4EBP1 (pT36/pT45) (BD) at 4 °C for 1 h and analyzed using FACSCanto II (BD).
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