The largest database of trusted experimental protocols

16 protocols using lectin pna

1

Fluorescence Microscopy of Testicular Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell lines or primary testicular germ cells were fixed in 4% paraformaldehyde for 15 min, permeabilized with 0.1% Triton X-100 for 10 min followed by incubation with Alexa Fluor 568 Phalloidin (dilution 1:200) for 20 min or Lectin PNA (Invitrogen; L32458, 1 μg/ml) for 1 h. Cells were counterstained with Hoechst 33342 (1:2000) or DAPI for 10 min. The fluorescence images were captured with Leica TCS SP8 confocal microscope, and Z-stack images were analyzed with Imaris Cell Imaging Software.
+ Open protocol
+ Expand
2

Histological Analysis of Spermatid Count

Check if the same lab product or an alternative is used in the 5 most similar protocols
For histological analysis, testes were fixed overnight in Bouin’s fixative or 4% PFA. Tissues were paraffin embedded, sectioned at 5um, and stained with hemotoxylyn and eiosin. To determine round spermatid numbers, paraffin embedded sections were dehydrated and incubated with lectin PNA (Invitrogen, L21409) for 1hr to detect the acrosome and DAPI to detect DNA. Total number of round spermatids (PNA positive cells with a distinct DAPI chromocenter) in Stage II-III and IIV-IIIV seminiferous tubules (>10 sections/stage, n=2 per genotype) were scored by two independent reviewers blind to the genotype.
+ Open protocol
+ Expand
3

HCR-FISH for Acrv1 and Rd3 in Testis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The testis section was prepared according to the IHC procedure and applied to the HCR-FISH process according to the manufacturer’s protocol from Molecular Instruments. In brief, the section was washed to remove the O.C.T. compound, additionally fixed with 4% PFA in DPBS at RT for 10 min, permeabilized with 0.5% Triton X-100 (Wako) at RT for 1 h, washed three times with 5xSSC buffer (Nacalai) with 0.1% Tween 20 (Biorad), equilibrated with HCR hybridization buffer at 37°C for 1 h, hybridized by manufacturer-designed probes targeting Acrv1 and Rd3 (final concentration: 16 nM), and incubated in a humidified chamber at 37°C overnight. The hybridization probes were designed to target multiple spots (maximum: 20 spots). Finally, 10 μL fluorescent probes with identifiers (Acrv1: B1-Alexa Flour 594, Rd3: B3-Alexa Flour 647) in 600 μL amplification buffer were applied to the section for the chain reaction. After washing out excess probes, lectin PNA (Invitrogen, 1:200) and DAPI (Dojindo, 1:1,000) were applied to the section, mounted with FluorSave (Merck Millipore), and incubated at 4°C overnight. Nikon Ti Eclipse Confocal Microscope was used to image the section.
+ Open protocol
+ Expand
4

Zinc and Calcium Imaging in Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
All reagents unless otherwise noted were from Sigma. FluoZin™-3, AM (FZ3; zinc probe) from ThermoFisher (F24195) was reconstituted with DMSO to a stock solution of 500 μM. Lectin PNA (A. hypogea/peanut agglutinin) conjugated to Alexa Fluor™ 647 (PNA-AF647) was from Invitrogen™ (L32460). Fluo-4 NW (calcium probe) from ThermoFisher (F36206) was reconstituted using kit provided assay buffer. Hoechst 33342 (H33342) from Calbiochem (382065) was reconstituted with H2O to a stock solution of 18 mM. PI from Acros Organics (AC440300010) was reconstituted with H2O to a stock solution of 1 mg mL−1. Proteasomal inhibitors were from Enzo Life Sciences: MG132 (BML-PI102) was reconstituted with DMSO to a stock solution of 20 mM; epoxomicin (Epox, BML-PI127) was reconstituted to a stock solution of 20 mM (using MG132 stock); and clasto-lactacystin β-Lactone (CLBL, BML-PI108) was reconstituted with DMSO to a stock solution of 5 mM. Zn-chelator TPEN from Tocris (16858-02-9) was resuspended with 1:100 EtOH:H2O to a stock solution of 1 mM. Bovine serum albumin was from Sigma (A4503). Anti-phosphotyrosine antibody, clone 4G10® was from EMD Millipore (05-321).
+ Open protocol
+ Expand
5

Sperm Capacitation and Acrosome Reaction Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Sperm capacitation and acrosome reaction were measured using Arachis hypogaea (peanut) agglutinin (Lectin PNA; Molecular Probes, Eugene, USA) as previously described [47 (link)]. Sperm were incubated in G-IVF + 10% HSA for 1 h in 6% CO2 and 5% O2 at 37 °C, washed in PBS, and incubated in Lectin PNA Alexa 594 antibody (1:100) in PBS for 45 min. Samples were stained with Hoechst to identify sperm nuclei. A minimum of 200 sperm were counted per sample and were classified as capacitated, non-capacitated, or acrosome reacted.
+ Open protocol
+ Expand
6

Immunohistochemical Analysis of Testes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Testes were fixed with 4% paraformaldehyde (PFA) diluted with PBS and then were gradient dehydrated with 5, 10, 12.5, 15, and 20% sucrose in PBS. After embedded in 50% Tissue-Tek O.C.T. compound (Sakura Finetek, 4583) in 20% sucrose on liquid nitrogen, the 5μm cryosections were spread onto Superfrost Plus slides and stored in −80 °C. After antigen retrieval by 0.01 mM Citrate or Tris-EDTA (PH = 9.0) and washing three times in PBS (10 min/wash), sections were incubated with primary antibodies (Supplementary Table 4) in a humidified chamber at 4 °C overnight. The slides were washed three times with PBS and then incubated with a secondary antibody (Supplementary Table 4) at RT for 1 h. After the primary SC was cultured, the sections were permeabilized with 0.2% Triton X-100 at RT for 5 min and washed with PBS. Then the sections were incubated with primary and secondary antibodies, mounted with DAPI (H1200, Vector laboratories), and photographed. For F-ACTIN staining, cryosections were rinsed with PBS and permeabilized by 10% Triton X-100 at RT for 30 min. Then the sections were incubated with phalloidin (Molecular Probes) and Lectin PNA (Molecular Probes) at RT for 1 h. After washing three times with PBS (10 min/wash), the slides were counterstained with DAPI and photographed with a fluorescence microscope (Olympus, Japan).
+ Open protocol
+ Expand
7

Cryosection Fluorescence Microscopy Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cryosections were processed for fluorescence microscopy following a published protocol (Li et al., 2013 (link)). For F-actin staining, cryosections were rinsed with PBS, permeabilized, and blocked with 5% normal goat serum. Sections were incubated with phalloidin (Molecular Probes), washed, and incubated with Lectin PNA (Molecular Probes) or antibody to Ddx4 (Abcam).
+ Open protocol
+ Expand
8

Antibody Development and Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
Polyclonal antibodies against VCP were developed in our laboratory as described previously36 (link). Anti-CHOP antibody was purchased from Santa Cruz Biotechnology (CA, USA); anti-M-opsin and anti-actin antibodies were purchased from Millipore (MA, USA); anti-cleaved caspase-3, anti-phospho-mTOR (Ser 2481), anti-phospho-mTOR (Ser 2448), and anti-mTOR antibodies were purchased from Cell Signaling (MA, USA). Lectin PNA was purchased from Molecular Probes (MA, USA).
+ Open protocol
+ Expand
9

Immunolocalization of OR51E2 in Sperm and HeLa

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunofluorescence and confocal microscopy were used to detect the expression and localization of OR51E2 in human spermatozoa and HeLa cells. In HeLa cells (kindly provided by Dr. Fabiola Moretti), we overexpressed FlagRho-OR51E2 (kindly provided by Dr. Jennifer Pluznick) to verify the specificity of the α-OR51E2 antibody. Human sperm cells, purified as described above, were treated with PA 50 mM or Ringer’s solution (CTR) for 10 min at room temperature. Then, the sperm cells were washed and smeared on polylysine slides, and then allowed to air-dry. Then, HeLa and sperm cells were fixed in 3.7% formaldehyde for 15 min at room temperature (RT) and subsequently treated with 5% BSA to block nonspecific binding. Then, both cellular models were treated with polyclonal anti-OR51E2 (1:200) overnight (Aviva System Biology, San Diego, CA, USA) antibody, washed three times by PBS, and incubated for 45 min with goat Alexa Fluo-488 anti-rabbit IgG (A11034 Molecular Probes, Thermo Fisher, Waltham, MA, USA). For the HeLa cells, DNA was stained with Prolong Gold DAPI (P36935 Molecular Probes), while in sperm cells, acrosomal compartment was counterstained with lectin PNA (L32459 Molecular Probes) following the manufacturer’s instructions.
+ Open protocol
+ Expand
10

Sulforaphane-Induced Apoptosis Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Sulforaphane (Cas No: 4478-93-7), Annexin V FITC assay kit and JC-1 were purchased from Cayman Chemical Company (Cayman Chemical, Michigan, Ann Arbor, USA). Lectin PNA and H2DFCDA were purchased from Thermo Fisher. All other chemicals used in the study were purchased from Sigma (Sigma, Aldrich Chemical Company, Burlington, Massachusetts, USA).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!