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4 protocols using goat anti rabbit fluorescent secondary antibody

1

GOT1 and MDH1 Assay Protocol

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The restriction endonuclease BsmB I and T4 DNA ligase were purchased from NEB, Inc. (Ipswich, MA, USA). The gel recovery kit, PrimeScript RT reagent Kit with gDNA Eraser reverse transcription kit, SYBR Premix ExTaq RT-PCR kit and competent cells were purchased from TaKaRa Bio Japan, Inc. (Tokyo, Japan). The plasmid isolation kit was purchased from Omega Bio-tek, Inc. (Norcross, GA, USA). Rabbit GOT1 primary antibodies (bs-3977R), rabbit MDH1 primary antibodies (bs-3996R) and rabbit β-actin primary antibodies (bs-0061R) were purchased from Bioss, Inc. (Woburn, MA, USA). Goat anti-rabbit fluorescent secondary antibodies were purchased from LI-COR Biosciences, Inc. (Lincoln, NE, USA). Penicillin–streptomycin and NADP/NADPH assay kits were purchased from Solarbio Science & Technology Co., Ltd. (Beijing, China). Low-glucose Dulbecco’s modified eagle medium (DMEM) and foetal bovine serum (FBS) were purchased from Gibco, Inc. (San Diego, CA, USA).
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2

Quantifying Protein Expression in Tissues

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Total protein was extracted from liver, muscle, and kidney tissues using radioactive immunoprecipitation (RIPA) lysates. Approximately 50–80 μg of protein was run on a discontinuous SDS-PAGE gel and transferred to a nitrocellulose membrane. The membranes were blocked with 5% skim milk in TBST containing 0.05% tween for 2 h and were then incubated with the following primary antibodies overnight at 4°C: (1) rabbit anti-ADPNR-1 (1:500), rabbit anti-ADPNR-2 (1:300), and rabbit anti-TGFβ-1 (1:200) (Santa Cruz Biotech, USA); (2) rabbit anti-PPAR-α (1:200), rabbit anti-G-6-P (1:500), and mouse anti-GLUT-4 (1:500) (Abcam, USA); (3) rabbit anti-AMPKα (1:1500), rabbit anti-Phospho-AMPKα (1:1000) (Cell Signaling Technology, USA); and (4) rabbit anti-GADPH (1:2000, Bioworld Tech). The membrane was washed and incubated at room temperature for 2 h in the dark with goat anti-rabbit fluorescent secondary antibodies (Li-COR Bioscience, USA). The NC membranes were scanned with an Odyssey infrared fluorescence scanner (Li-COR Bioscience, USA). The optical density (OD) of the signals was quantified and expressed as the ratio of OD of the tested proteins (PPAR-α, G-6-P, GLUT-4, ADPNR-1, ADPNR-2, and TGFβ-1) to that of GADPH. The protein expression of AMPK phosphorylation parameters was expressed as the pAMPK and AMPK striped gray value ratio.
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3

Quantitative Western Blot Analysis

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Proteins (50 μg) were electrophoretically separated using a 4–20% SDS polyacrylamide gel and then transferred onto a nitrocellulose membrane (Bio-Rad). Membranes were blocked with Odyssey blocking buffer (LiCor) for 1 h at room temperature. Membranes were probed with the following primary antibodies: rabbit anti-MeCP2 (1:1000, Millipore 07–013), rabbit anti-mGlu7 antibody (1:1000, Millipore 07–239), mouse anti-Gapdh antibody (1:5000, ThermoFisher MA5-15738), and mouse anti-Tubulin antibody (1:500, Abcam ab44928) overnight at 4 °C. Membranes were washed three times with Tris-buffered saline and Tween 20 (TBS-T, 25 mM Tris, 150 mM NaCl, 0.05% Tween 20) and then incubated with either a goat anti-rabbit fluorescent secondary antibody (800, 1:5000, LiCor) or a goat anti-mouse fluorescent secondary antibody (680, 1:5000, LiCor). Fluorescence was then quantified using Image Studio Light software. Each value for MeCP2 and mGlu7 protein expression was first normalized to the value calculated for Gapdh expression (total protein blots) or Tubulin expression (synaptosome blots).
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4

Western Blot Analysis of Glutamate Receptors

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Samples were prepared by combining total protein lysate (20 μg from cells, 50 μg from brain tissue) with 4× Odyssey loading dye (LI-COR) in the presence or absence of 250 mM DTT. For glycosidase experiments, whole cell lysates were treated with PNGase F (Promega) or EndoH (New England Biolabs) according to the manufacturer’s instructions. Samples were electrophoretically separated using a 4% to 20% SDS polyacrylamide gel and then transferred onto a nitrocellulose membrane (Bio-Rad). Membranes were blocked with Odyssey blocking buffer (LiCor) for 1 hour at room temperature and probed with primary antibodies against the HA tag (1:5000, Abcam, ab9110), mGlu3 (1:1000, Alomone, AGC-012), mGlu4 (1:1000, Abcam, ab53088), mGlu7 (1:1000, MilliporeSigma, 07-239), or Gapdh (1:5000, Thermo Fisher Scientific, MA5-15738). Membranes were washed 3 times with TBST and then incubated with goat anti-rabbit fluorescent secondary antibody (800CW, 1:5000, LI-COR) and goat anti-mouse fluorescent secondary antibody (680CW, 1:5000, LI-COR). Blots were imaged with an Odyssey scanner and fluorescence was quantified using Image Studio Light software. See supplemental material for images of full unedited blots
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