The largest database of trusted experimental protocols

23 protocols using vegfr2

1

Multiparametric Flow Cytometry of Immune Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell surface markers and intracellular cytokines were stained according to the eBioscience flow cytometric protocols. Briefly, cells were collected and washed with PBS. For surface markers staining of CD45, CD3, CD4, CD8, CD25, CD69, CD11b, CD11c, CD34, Sca‐1, CD44, CD140a, CD25, CD69 (eBioscience), VEGFR2, and VEGFR3 (R&D), cells were resuspended in PBS containing 0.5% BSA and incubated with fluorochrome‐conjugated antibodies at room temperature for 30 min. For intracellular staining, cells were fixed, permeabilized, and then stained with IFN‐γ (eBioscience). Cell samples were analyzed using a BD FACS Calibur flow cytometer (BD Biosciences). FlowJo software was used for data analysis.
+ Open protocol
+ Expand
2

Whole-mount Immunostaining Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Whole-mount immunostaining was performed as previously described18 (link), 52 (link). Antibodies used were: VE-cadherin (BD Biosciences, 550548, 1:250), VEGFR2 (R&D Systems, AF644; 1:250), DACH1 (Proteintech, 10914-1-AP, 1:1000), Myosin (Smooth Muscle) Heavy Chain (Alfa Aesar, BT 562, 1:1000), CTNT (DSHB, CT3-3, 1:1000) and NKX2.5 (Santa Cruz, sc-8697, 1:250). Secondary antibodies were Alexa Fluor conjugates (488, 555, 647, Life Technologies; 1:250).
+ Open protocol
+ Expand
3

Phenotypic Characterization of Progenitor Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Phenotypic characterization of EOCs and ECFCs was performed by flow cytometry and compared to PBMCs and HUVECs [18 (link)]. Cells were harvested by washing cells with phenol red-free and serum-free basal RPMI 1640 medium followed by trypsinization with 0.05 % trypsin–EDTA (Gibco) for 15 min at 37 °C [38 (link)]. Cells were subsequently blocked with normal mouse serum for 15 min, washed and incubated for 30 min with PE-labeled fluorescent human monoclonal antibodies against the monocytic marker CD14 (R&D Systems, Minneapolis, MN, USA), the leukocytic marker CD45 (AbD Serotec, Oxford, UK), the progenitor marker CD34 (BD Biosciences), the angiogenic marker VEGFR2 (R&D Systems), and the endothelial markers CD31 (BD Biosciences) and CD144 (BD Biosciences). Cells were then fixed with paraformaldehyde for 30 min and analyzed on an Altra flow cytometer (Beckman Coulter, Mississauga, ON, Canada). Cells were gated by their characteristic forward and side scatter properties.
+ Open protocol
+ Expand
4

Immunofluorescence Staining of Endothelial Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following primary antibodies were used at the indicated concentrations: MYC-Tag for COUP-TF2OE (Cell Signaling Technology, Inc., 2278S, 1:300), VE-Cadherin (BD Pharmingen, 550548, 1:125), VEGFR2 (R&D Systems, AF644, 1:125), Cx40 (Alpha Diagnostic International, CX40A, 1:300), ERG (Abcam, ab92513, 1:500), CXCR4 (BD Pharmingen, 551852, 1:125), GFP (Abcam, ab13970, 1:500), VWF (Abcam, ab6994, 1:500), CLDN11 (Abcam, ab53041, 1:1000), SOX17 (R&D Systems, AF1924, 1:500), anti-actin α-smooth muscle- FITC (Sigma, F3777, 1:200), VEGFR3 (R&D Systems, AF743, 1:125), DACH1 (Proteintech, 10914-1-AP, 1:500), JAG1 (R&D Systems, AF599, 1:125).
All secondary antibodies were Alexa Fluor conjugates (488, 555, 633, 635, 594, 647, Life Technologies, 1:125 or 1:250). DAPI (1mg/ml) was used at 1:500.
+ Open protocol
+ Expand
5

Immunohistochemical Profiling of ESCC

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunohistochemical (IHC) staining of HLA class I, TTK, URLC10, KOC1, VEGFR1 and VEGFR2 antigens of the ESCC and adjacent normal tissues were investigated using the serial sections of formalin-fixed, paraffin-embedded biopsy samples, as described previously [25 (link)]. The primary antibodies used in this study were as follows: HLA class I (Cosmo Bio. Co.Ltd. Tokyo, Japan), URLC10 (Imagenex, San Diego, CA.), TTK (Novus Bio. LLC. Littleton, CO.), KOC1 (Santacruz Bio. Inc. Dallas, Texas), VEGFR1 (Novus Bio. LLC.) and VEGFR2 (R&D Systems Inc., Minneapolis, MN). Immunoreaction was detected using the following secondary antibody systems: Simple Stain MAX-PO kit (Nichirei Bioscience, Tokyo, Japan) for HLA class I, URLC10, KOC1 and TTK; and CSA-II Biotin-free Tyramide Single Amplification System (Dako Inc., Carpinteria, CA) for VEGFR1 and VEGFR2, according to the instructions of the manufacturer. The intensity of staining was evaluated using the following criteria: strong positive staining of more than 80% (+++), positive staining of 50-80% (++); positive less than 50% (+); and no appreciable staining in tumor cells (-).
+ Open protocol
+ Expand
6

Immunophenotyping of Endothelial Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
After the treatments, the cells were washed with 10 mL phosphate buffered saline, and 3 mL trypLE (Gibco 12604-013; Thermo Fisher Scientific, Waltham, MA, USA) was added to each flask to disassociate the cells from the flask. The activity of trypLE was stopped by adding 3 mL trypsin neutralization solution (Gibco R002100), which does not contain serum. The cells were counted after resuspension and collected by centrifugation. All cell pellets were resuspended in stain buffer (BD Biosciences, San Jose, CA, USA) at 4×106 cells/mL or 105 cells/25 μL.
Of the cells in stain buffer, 25 μL were transferred to flow cytometry-compatible polystyrene round-bottom tubes (BD Biosciences 352008), and 10 μL allophycocyanin- or phycoerythrin (PE)-labeled antibodies (anti-human VEGFR1, VEGFR2, VEGFR3, PDGFR-β, Tie-2, or CD31 from R&D Systems, Inc., Minneapolis, MN, USA) were added to the appropriate tubes. The samples were incubated in the dark at 4°C for 45 minutes. Untreated cells (100 μL) were used as the no-antibody control.
+ Open protocol
+ Expand
7

Isolating Tissue-Derived Progenitor Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fresh tissue (50 mg) was washed with saline (10% heparin), then soaked in saline for ~40 min. With ophthalmic scissors the tissue was cut into small pieces ~1 mm3 and digested with 1 ml trypsin at 37°C for 15 min, gentle agitation every 3 min during the process. Digestion was terminated with 2 ml 10% fetal calf serum (Clonetics, Cambrex, MD, USA). Large clumps of tissue and connective tissue were removed using a 200-mesh filter and the cell suspension was collected. The solution was centrifuged at low speed (1,300 × g) for 10 min, the cells were collected and the supernatant was discarded. The precipitate was washed with 1 ml phosphate-buffered saline (PBS) and resuspended in 200 μl PBS buffer containing CD34 (BD Biosciences, San Diego, CA, USA), CD133 (Miltenyi Biotec, Bergisch Gladbach, Germany), VEGFR-2 (R&D Systems Inc., Minneapolis, MN, USA) and 5 μl monoclonal fluorescent antibody. The mixture was incubated for 30 min according to the manufacturer’s recommendations (BD Biosciences). Samples were fixed in 1% formaldehyde and analyzed using a FACSCalibur flow cytometer (BD Biosciences). The control and experimental groups used the same processing methods.
+ Open protocol
+ Expand
8

VEGFR2 and CD31 Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The protein levels of vascular endothelial growth factor receptor-2 (VEGFR2, 1:3000; R&D systems) and cluster of differentiation 31 (CD31; 1:5000; Abcam) in each group were examined by western blot as described above.
+ Open protocol
+ Expand
9

Isolation and Characterization of Endothelial Progenitor Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Human peripheral blood mononuclear cells (PBMCs) were separated and collected by density gradient centrifugation with Histopaque-1077 (Sigma) and seeded on fibronectin (Gibco) precoated 6-well culture plates. The EGM-2 MV BulletKit (Lonza Clonetics) complete medium was used and changed every three days. The adherent cells were passaged at approximately 80% confluence after two weeks of culture. Third to fourth passage cells were used for the subsequent experiments.
For EPC identification, cells were immunofluorescently stained using antibodies against endothelial markers CD34 (Epitomics) and VEGFR-2 (R&D Systems) as well as stem/progenitor marker CD133 (Origene). Additionally, cells were identified by flow cytometry after staining with the above three antibodies. Dual staining for acetylated low density lipoprotein (Dil-AcLDL, Molecular Probes) uptake and lectin from Ulex europaeus (FITC-UEA-I, Sigma) binding was also used for EPC confirmation [20 (link)].
+ Open protocol
+ Expand
10

VEGFR Signaling Pathway Inhibitors

Check if the same lab product or an alternative is used in the 5 most similar protocols
PLX4720 and Lenvatinib were from Selleck. Dabrafenib was from ChemieTek. GW2580 and gefitinib were from LC Laboratories. PD173074 was from Abcam. Recombinant human VEGF, anti-human VEGF blocking mAb, phospho-VEGFR1 (Y1213), Phycoerythrin-conjugated anti-human VEGFR1, VEGFR2, VEGR3 and neuropilin-1 were from R&D Systems. phospho-ERK (pERK), pAKT, pNF-κB, pCRAF, pARF, pSTAT3, pVEGFR1, pp38, total ERK, CRAF, AKT, STAT3, PDGFRβ, Rab11, HSP90 and Vinculin (Cell Signaling). Corning Transwells (pore size, 0.4 μm) were from Fisher Scientific for co-culture experiments.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!