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11 protocols using eflour450

1

Inhibition of Immune Signaling Pathways

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LA-4 cells were pre-incubated with the indicated amounts of either the mTOR inhibitor rapamycin (Invivogen, Toulouse, France), MAPK-inhibitors U0126 (MEK1/2 MAPK inhibitor, Cell Signaling Technologies, Leiden, The Netherlands), SP600125 (SAP/JNK MAPK inhibitor, Invivogen), SB-202190 (p38α/β MAPK inhibitor, Invivogen), the NFκB- and MAPK-inhibitor dexamethasone (Invivogen), the IKK-β-inhibitor TPCA-1 (Abcam, Berlin, Germany), the inhibitor of actin polymerization cytochalasin A (Sigma-Aldrich), the inhibitor of endosomal acidification chloroquine (InvivoGen), or the COX2-inhibitor NS-398 (Sigma-Aldrich, Steinheim, Germany) for 90 min and subsequently stimulated with rFlaA:Betv1 for 24 h. For analyzing cell viability, LA-4 cells were treated as indicated and stained for dead cells using the fixable viability dye eFlour450 (#65-0865-14, eBioscience) and measured by FACS. Data were analyzed using FlowJo V.7 (Treestar Inc., Ashland, OR, USA) and GraphPad PRISM (GraphPad Software, San Diego, CA, USA).
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2

Multiparametric Flow Cytometry Analysis

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Supernatant of hybridoma 2.4g2 (anti-CD16/32) was used to block Fc receptor. Cells were stained with Fixable Viability Dye eFluor 506 (eBioscience) to detect dead cells before surface staining. Annexin V apoptosis detection kit, eFlour 450 (eBioscience) and Ki-67 kit (BD Biosciences) were used according to manufacturers’ protocol. Antibodies used for flow cytometry were listed in Supplementary Table 1. Pan-caspase activity was detected by FAM-FLICA™ Poly Caspase Assay Kit (ImmunoChemistry Technologies) according to manufacturer's protocol. For intracellular cytokine staining and transcription factor staining, Foxp3/Transcription Factor Staining Buffer Set (eBioscience) was used as manufacturer’s protocol. IELs (1 × 106 cells/ml) and LPLs (1 × 106 cells/ml) were stimulated with IL-12 (10 ng/mL) or IL-23 (10ng/mL)/IL-1β (10ng/mL) with GolgiPlug at 37°C for 4 hours for cytokine production, or IL-15 (20 ng/mL) at 37°C for 24 hours for Bcl-2 expression. Data were acquired on a FACSCanto II (BD Biosciences) and analyzed with FlowJo software (TreeStar).
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3

Competitive Adoptive Transfer of Monocytes

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Purified BM CD11b+Ly6C+ monocytes from donor mice were intravenously transferred into recipient mice (1.5–2.5 × 106 cells/mouse). For competitive adoptive monocyte transfer, purified BM monocytes from CD45.2+ WT and either CCR2, β7-integrin or CCR9 knockout mice were labeled with eFlour 450 and eFlour 670 (eBioscience) and mixed at a 1:1 ratio. Labeled cells were intravenously transferred into CD45.1+CCR2−/− non-manipulated or manipulated recipients. Along with these experiments, monocytes from WT donors were labeled with either eFlour 450 or eFlour 670, mixed at a 1:1 ratio and competitively transferred to recipient mice as control. One day after transfer, donor monocytes were recovered from small intestine, colon, liver, spleen and BM, and the ratio of gene-deficient to WT donor monocytes in respective tissues was determined by flow cytometry. For monocyte differentiation experiments, purified BM monocytes from CD45.2+ WT or CX3CR1gfp/+ donors were intravenously injected into non-manipulated or manipulated CD45.1+ CCR2-/- recipients. Donor monocyte-derived cells were then re-isolated from small intestines of recipient mice at 1, 2 or 5 days after transfer for flow cytometric and transcriptomic analysis.
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4

Activation of Dendritic Cells by Allergens

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BALB/c or C57Bl/6 mDCs were seeded at 3.2 × 105 cells/ml in 24-well plates (Thermo Scientific, Dreieich, Germany) and stimulated with the indicated equimolar concentrations of rFlaA, rArt v 1, rFlaA + rArt v 1, rFlaA:Artv1, or rFlaA:Artv1hyp for 24 h. 10 µg/ml LPS (#L5886, Sigma Aldrich, Taufkirchen, Germany) served as positive control. Supernatants were analyzed for cytokine secretion by ELISA. The activation of mDCs was assessed by FACS using anti-mouse FITC-conjugated CD40 and phycoerythrin (PE)-conjugated CD69 mAbs (eBioscience, Frankfurt, Germany). Additionally, cells were stained with anti-mouse pacific blue-conjugated CD11b (Invitrogen, Thermo Fisher Scientific), allophycocyanin (APC)-conjugated CD11c (BD Bioscience, Heidelberg, Germany), and PE-Cy5-conjugated B220 (BD Bioscience) with their respective isotype controls. FITC or PE intensity of CD11b+CD11c+B220 (mDC) cells was quantified by FACS using a LSR II flow cytometer (BD Bioscience, Heidelberg, Germany). For analysis of cell viability mDC were treated as indicated and stained for dead cells using the fixable viability dye eFlour450 (eBiosciences, Frankfurt, Germany). Data were analyzed using FlowJo 10 (Treestar Inc., Ashland, OR, USA).
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5

Splenocyte Isolation and Tetramer Analysis

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Mice were sacrificed seven days after immunization and splenocytes were isolated as previously described [6 (link)]. In brief, red blood cells were lysed using ACK buffer and then splenocytes were counted using a Z1 Coulter counter. For tetramer analysis, splenocytes were immediately blocked for Fc (Tonbo Bioscience) and stained for B8R tetramer (AF488, 1:300, NIH Tetramer Facility, Atlanta, GA) followed by staining with anti-CD3 (PeCy7, 1:100, clone 145-2C11) and anti-CD8α (eFlour450, 1:200, clone 145-2C11). Cells were then stored overnight at 4C in a 1:1 of IC Fixation Buffer (ThermoFisher Scientific) and FACS buffer. For analysis of cytokine production, 1.7x106 cells were plated in a 96 well dish and incubated for five hours in the presence of B8R20-27 (TSYKFESV) or OVA257-264 (SIINFEKL) peptides and brefeldin A (eBioscience). Splenocytes were then subjected to FC block (Tonbo Bioscience) and stained with anti-CD3 (FITC, 1:200, clone 145-2C11) and anti-CD8α (eFlour450, 1:200, clone 53–6.7) before treatment with fixing and permeabilization buffers (eBioscience). Cells were then further stained with anti-IFNγ (APC, 1:300, clone XMG1.2). Samples were acquired using the LSRII flow cytometer (BD Biosciences, San Jose, CA) and analyzed with FlowJo software (Tree Star, Ashland, OR).
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6

Multicolor Flow Cytometry Panel

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Antibodies used were anti-CD4 (RM4-5) conjugated to PerCpCy5.5, anti-CD3 (145-2C11) conjugated to FITC or anti-CD3 (500 A2) V500, anti-CD44 (1M7) conjugated to AlexaFlour700 (all BD Biosciences), anti-CD11c (N418), anti-B220 (RA3-6B2), anti-CD11b (M1/70), anti-F4/80 (BM8) conjugated to eFlour450 and anti-FoxP3 (FJK-16S) conjugated to APC (all eBiosciences), anti-CD8a (5H10) conjugated to Pacific Orange (Invitrogen) or anti-CD8a (53-6.7) conjugated to PE-Cy7, anti-CD62L (MEL-14) conjugated to APC-Cy7 (BD Biosciences). FoxP3 was stained intracellularly using FoxP3/Transcription Factor Fixation/Permeabilization kit (eBiosciences). Data were collected on an LSR Fortessa flow-cytometer (BD) and analyzed using FlowJo (Treestar) software.
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7

Multicolor Flow Cytometry Analysis

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Surface levels of CD4, BST-2, CCR7 and NTB-A were assessed by staining cells with their appropriate antibodies at 4°C for 30 min in buffer (1 × PBS + 3% FBS). An additional step including a secondary antibody was necessary to detect BST-2 surface levels. A viability dye, eFlour 450 (eBioscience) was then used to distinguish live from dead cells. Fixation was achieved using 0.5% Paraformaldehyde (PFA).
In experiments involving surface analysis of CD4 and detection of intracellular p24, cells were first probed with anti-APC-CD4, stained with eFluor 450, permeabilized (Cytofix/Cytoperm: BD Biosciences) and then stained with mouse-anti-FITC-p24. Total levels of CD4 in primary CD4+ T cells were measured by staining cells with eFlour 450, permeabilization and then probing with anti-APC-CD4. All data was collected on a BD FACS CantoII and analyzed with FlowJo software.
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8

In Vivo Cytotoxicity Assay

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A single-cell suspension of splenocytes from naïve syngeneic mice was diluted to 1.5 × 108/ml in RPMI1640 containing 10% FBS and 2% penicillin and streptomycin pulsed at 37°C with or without 5 μg/ml peptides as described previously [19 (link)]. After 4 h, eflour450 (eBioscience, 65-0842-85) at 5 mM (high concentration) was used to label peptide-pulsed cells at room temperature in the dark. Non-peptide-pulsed cells were labelled with a low concentration of eflour450 at 0.5 mM. After being rinsed three times with PBS, 4 × 106 labelled and peptide-pulsed cells and an equal number of labelled non-peptide-pulsed cells were adoptively transferred by tail vein injections into mice that had previously been immunized. Six hours later, the percentage of labelled cells in spleens was detected with LSRFortessa flow cytometry (BD) and analyzed by FlowJo (TreeStar). The following formula calculated the specific cell lysis: Specific cell lysis ability% = (1-(percentage of cells incubated with peptide/percentage of cells incubated without peptide)) x100%.
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9

Assessing Antigen-Specific Cell Lysis

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Single suspensions of splenocytes from naïve syngeneic mice were diluted to 1.5*108/ml by RPMI1640 with 10% FBS and 2% Penicillin and Streptomycin, respectively, pulsed with or without 5 μg/ml peptides as mentioned above at 37°C. After 4 hours, a higher concentration of eflour450 (eBioscience, 65–0842-85) at 5 mM was used to label pulsed peptide cells. Cells without peptide-pulsed were labeled with a low concentration of eflour450 at 0.5 mM at room temperature in the dark. After being rinsed by PBS three times, 4*106 of labeled and peptides-pulsed cells and another equal number of labeled cells without peptide-pulsed were adoptive transferred by tail vein injections into mice previously immunized with different vaccines, respectively. Six hours later, the percentage of labeled cells was detected with LSRFortessa flow cytometry (BD) and analyzed by FlowJo (TreeStar). The following formula calculated the specific cell lysis: Specific cell lysis ability = (1-(percentage of cells incubated with peptide/percentage of cells incubated without peptide)) *100%.
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10

Migratory Capacity of Human ILC2s

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To analyze the migratory capacity of circulating human ILC2s under defined experimental conditions, freshly isolated CRTH2+ human blood cells were labeled with the hematopoietic lineage cocktail (eFlour450, eBioscience) and fluorescent antibodies targeting CD11c (VioBlue, MJ4-27G12, Miltenyi Biotec), CD161 (FITC, 191B8, Miltenyi Biotec) and CRTH2 (PE, BM16, Miltenyi Biotec). 1.6 × 105 stained CRTH2+ cells were suspended in 80 μl X-Vivo 15 medium (Lonza, 1% P/S) and applied to the upper insert of a 96 well-plate with 3 μm pore size (Corning). If indicated, a CCR6 blocking antibody (50 μg/ml in the insert, MAB195, R&D) or the respective isotype control antibody (BioLegend) were added. The bottom well was filled with 235 μl X-Vivo 15 medium and rh CCL20 (10 ng/ml and 100 ng/ml, Immunotools) as indicated. CCL25 (100 ng/ml, Immunotools) served as negative control, PGD2 (10 nM, Merck) as positive control (31 (link)). After 4 h at 37°C the number of migrated ILC2s in the bottom chamber was determined as LinnegCD161+CRTH2+ lymphoid cells via flow cytometry. The migration index was defined as relative migration of LinnegCD161+CRTH2+ cells attracted toward a chemotactic stimulus compared to those attracted by medium alone.
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