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5 protocols using ab77231

1

Antibody-based Immunoblotting and ChIP-seq

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Antibodies used for immunoblotting were anti-SUMO2/3 (M114-3, MBL), anti-UBC9 (sc10759, Santa Cruz Biotechnology), anti-PIAS1 (ab77231, Abcam), anti-tubulin (sc5286, Santa Cruz Biotechnology), anti-laminB1 (sc6216, Santa Cruz Biotechnology), anti-Pol2 (sc-899, Santa Cruz Biotechnology), anti-histone H3 (ab1791, Abcam), and anti-HSF1 (ADI-SPA-901; ENZO Life Sciences). Antibodies used for ChIP-seq were anti-SUMO2/3 (M114-3, MBL), anti-PIAS1 (ab77231, Abcam), and anti-Pol2 (MMS-126R, Covance).
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2

Immunoblotting and Immunoprecipitation of PIAS1, AR, and FOXA1

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VCaP cell samples were prepared as described (27 (link)) and analyzed by immunoblotting with anti-PIAS1 (Santa-Cruz Biotechnology, sc-8152), anti-AR (28 (link)), anti-p21 (Millipore, OP64) and anti-tubulin (Santa-Cruz Biotechnology, sc-5286) antibodies. The appropriate secondary antibody was from Invitrogen and chemiluminescence detection reagents from Pierce. PIAS1 was immunoprecipitated with anti-PIAS1 antibody (Abcam, ab109388) which was coupled to Magna ChIP™ Protein A Magnetic Beads (Millipore). Normal rabbit IgG (Santa-Cruz Biotechnology, sc-2027) was used as a control antibody and the immunoprecipitates were immunoblotted with anti-AR (Santa-Cruz Biotechnology, sc-7305) antibody. For FOXA1 and PIAS1 immunoprecipitation, anti-FOXA1 (Abcam, ab23738) antibody was used to immunoprecipitate FOXA1 and the immunoprecipitates were immunoblotted with anti-PIAS1 (Abcam, ab77231) antibody.
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3

PLA Assay for YTHDF2-PIAS1 Interaction

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Akata (EBV+) cells were fixed with cold methanol for 5 min at −20°C followed by permeabilization with 0.5% Triton X-100 for 5 min. The PLA experiments were performed using Duolink in situ PLA kit (DUO92101, Sigma) according to manufacturer’s instructions. Briefly, cells were blocked with 3% BSA in PBS at room temperature for 1 h, then incubated with PBS control or a mixture of mouse anti-YTHDF2 (H00051441-B01P, Abnova) and rabbit anti-PIAS1 (ab77231, Abcam) antibodies (1:500 dilution in PBS) at 4°C overnight. Then the probes were incubated at 37°C for 1 h, followed by ligation and amplification. Cell nuclei were stained using Duolink in situ mounting media with 4′,6-diamidino-2-phenylindole and visualized by Nikon AXR confocal microscope.
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4

Antibodies Used in Protein Study

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Antibodies to human proteins used in this study included: actin (1:20,000 dilution (MAB1501, Millipore, RRID: AB_2223041)); DNMT1 (1:1,000, described in ref. 11); FLAG (1:1,000 (A00187, GenScript, RRID: AB_1720813)); GFP (1:5,000, Abcam (ab6556, RRID: AB_305564)); HA (1:1,000 (11867423001, Roche, RRID: AB_390918)); histone H3 (1:20,000, Abcam (ab1791, RRID: AB_302613)); PARP1 (1:1,000, Santa Cruz Biotechnology (sc-8007, RRID: AB_628105)); PIAS1 (1:1,000 (ab77231, Abcam, RRID: AB_1524188)); RNF4 (1:5,000, described in ref. 54); SUMO1 (1:1,000, Thermo Fisher Scientific (33-2400, RRID: AB_2533109)); SUMO2/3 (1:1,000, Abcam (ab3742, RRID: AB_304041); 1:1,000, Abcam (ab81371, RRID: AB_1658424)); TOP1 (1:500, Bethyl (A302-590A, RRID: AB_2034875)); TOPORS (1:250, sheep polyclonal raised against full-length human TOPORS); ubiquitin (1:1,000, Santa Cruz Biotechnology (sc-8017 AC, RRID: AB_2762364); 1:1,000, Millipore (04-263, RRID: AB_612093)); ubiquitin (K48-linked) (1:1,000, Millipore (05-1307, RRID: AB_1587578)); ubiquitin (K63-linked) (1:1,000, (05-1308, RRID: AB_1587580)); UBE2K (1:1,000, Cell Signaling Technology (3847, RRID: AB_2210768)); and USP7 (1:1,000, Bethyl (A300-033A, RRID: AB_203276)).
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5

Protein Expression Analysis in SCLC

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NCI-H82 cells were infected with miR-375-expressing (H82-miR-375) or empty (H82-NC) lentivirus at a MOI of 80. The infection efficiency was about 100% as assessed by microscopy of GFP fluorescence. The cells were harvested after 72 hours. Total protein of the cells or fresh tissues (2 AC, 2 SQ, 3 SCLC and 1adjacent normal tissue) were prepared using RIPA lysis buffer. Cell protein lysates were separated in 10% SDS-polyacrylamide gels, electrophoretically transferred to polyvinylidenedifluoride membranes (Roche, Pleasanton, CA), then detected with antibodies including anti-ITPKB (for cell line: ab171984, Abcam; for tissue: NBP1- 81589, Novus Biologicals), anti-RUNX1(ab54869, Abcam), anti-LRP5 (ab38311, Abcam), anti-PIAS1(ab77231, Abcam), anti-FZD8 (ab155650, Abcam), anti-ITGA10 (ab118099, Abcam), anti-GAPDH (Santa Cruz) and peroxidise-conjugated secondary antibodies (Santa Cruz). The intensity of protein fragments was quantified using Quantity One software and was normalized by GAPDH.
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