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13 protocols using c ebp homologous protein chop

1

Protein Expression Analysis in Renal Cortex

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Total protein samples were extracted from the right renal cortex using lysis buffer containing protease inhibitor. The protein concentrations were measured using the Bio-Rad protein assay system (Bio-Rad Laboratories, Hercules, CA, USA). After boiling the samples for 5 min, the protein samples were run on SDS-PAGE (polyacrylamide gels). The lysates were resolved by electrophoresis (70 V for 25 min and 120 V for 1.5 h) and transferred onto NC membranes (nitrocellulose membrane; Bio-Rad Laboratories). After blocking, the NC membranes were treated overnight at 4 °C with the following primary antibodies: C/EBP homologous protein (CHOP; catalog no. 2895), GRP78 (catalog no. 3177), total-p53(catalog no. 9282) and Phospho-p53 (Ser15) (catalog no. 9284), and GAPDH (catalog no. 2118) were from Cell Signaling Technology. The density for each tested protein was normalized against GAPDH. Western blot bands were quantified using Odyssey v1.2 software by measuring the band intensity (Area x OD; Optical Density) for each group. All the presented results were representative of at least three independent experiments.
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2

Western Blot Analysis of ER Stress Markers

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Denatured proteins extracted from PRKs were resolved by 10% SDS-PAGE (Beyotime). The resolved protein bands were subsequently transferred onto PVDF membranes. The membranes were incubated for 12 h at 4 °C with primary antibodies to SIRT4 (1:800 dilution; ab231137, Abcam), caspase 12 (1:800 dilution; ab62484, Abcam), C/EBP-homologous protein (CHOP; 1:1200 dilution, #5554; Cell Signaling Technology, Beverly, MA, United States), glucose regulated protein 78 (GRP78; 1:1000 dilution; ab108615, Abcam), and glyceraldehyde 3-phosphate dehydrogenase (GAPDH, 1:2000 dilution; ab8245, Abcam). The membranes were then incubated with goat anti-rabbit antibody (1:12000 dilution; ab205718, Abcam) for 2 h at 25 °C. Immunoreactive bands were detected using an ECL system (Millipore, Temecula, CA, United States).
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3

Protein Extraction and Western Blot Analysis

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Total proteins were extracted using CytoBuster Protein Extraction Reagent containing a protease inhibitor cocktail (Roche, Indianapolis, MN) and Phosphatase Inhibitor Cocktail (Roche). Western blot was performed as previously described with the following primary antibodies: LC3B (NB100-2220, Novus Biologicals, Littleton, CO), p62/SQSTM1 (H00008878, Novus Biologicals), cathepsin D (sc-10725, Santa Cruz), Lysosomal-associated membrane protein (LAMP2) (NBP1-71692, Novus Biologicals), Rubicon (8465, Cell Signaling Technology, Danvers, MA), phospho-AMPKα (2535, Cell Signaling), phospho-mTOR (2971, Cell Signaling), phosphor-p70 ribosomal protein S6 kinase (p70 S6 Kinase) (9205, Cell Signaling), phosphor-4E-BP1 (2855, Cell Signaling), ubiquitin (3936S, Cell Signaling), GRP78 (sc-13968, Santa Cruz Biotechnology, Santa Cruz, CA), phosphorylated inositol-requiring enzyme 1α (p-IRE1α) (NB100-2323, Novus Biologicals), IRE1α (3294, Cell Signaling), C/EBP homologous protein (CHOP) (2895, Cell Signaling), X-box binding protein 1 (XBP-1) (sc-7160, Santa Cruz), β-Actin (sc-4778, Santa Cruz), and GAPDH (sc-25778, Santa Cruz) .
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4

Western Blot Analysis of Cellular Proteins

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Cells were lysed in radio-immunoprecipitation assay buffer (100 mM Tris-HCl pH 8.0, 150 mM NaCl, 0.1% SDS, and 1% Triton X-100) at 4 °C. Protein concentrations in the lysates were measured using a DC Protein Assay Kit (Bio-Rad Laboratories, Hercules, CA, USA). Proteins in aliquots of the lysate were separated by 12% SDS-PAGE and electro-transferred to PVDF membranes (Immobilon-P; Millipore, Bedford, MA, USA), using a Bio-Rad Semi-Dry Transfer Cell. The blots were then incubated with primary antibodies against α-actinin (ACTN), p53, glucose-regulated protein 78 (GRP78) (Santa Cruz Biotechnology, Dallas, TX, USA), C/EBP homologous protein (CHOP) (Cell Signaling, Danvers, MA, USA), cyclin D1, and p21 (Abcam, Cambridge, UK). Thereafter, the blots were incubated with horseradish peroxidase-conjugated secondary antibody (Santa Cruz Biotechnology). The immunoreactive proteins were detected using ECLTM Western Blotting Detection Reagent and Amersham HyperfilmTM ECL (GE Healthcare, Waukesha, WA, USA). The procedural details were described in our previous publications [33 (link),34 (link)].
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5

Immunoblot Analysis of ER Stress Markers

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Immunoblot analysis was performed as described previously (21 (link)). Briefly, cell lysates (10-20 µg) were prepared, separated via electrophoresis by SDS-PAGE, and transferred to nitrocellulose blots. Antibody-reactive protein bands were visualized using an enhanced chemiluminescence detection system (Amersham Pharmacia Biotech Inc., Piscataway, NJ, USA). Antibodies against cleaved caspase-7 (Asp198), poly (ADP-ribose) polymerase (PARP), 78-kDa glucose-regulated protein (GRP78), ATF4, inositol-requiring enzyme 1-alpha (IRE1α), and C/EBP homologous protein (CHOP) were obtained from Cell Signaling Technology (Beverly, MA, USA). Antibodies against glyceraldehyde 3-phosphate dehydrogenase (GAPDH) and X-box binding protein 1 (XBP-1) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Relative band intensity normalized to GAPDH was measured using ImageJ version 1.52a software (National Institute of Health, MD, USA).
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6

Western Blot Analysis of Cellular Stress Markers

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After homogenization of the cells, the protein concentration was measured using the Bradford protein assay (Bio-Rad, CA, USA). Protein (25 μg) was loaded into the wells, separated on sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis (PAGE) gels (10–15%) (80 V, 3 h), and transferred to a nitrocellulose membrane (50 V, 2 h). After membranes were blocked in 5% skim milk for 1 h, immunoblotting was conducted by incubating with the primary antibodies overnight at 4°C. In this study, 78-kDa glucose-regulated protein (Grp78), binding immunoglobulin protein (Bip), inositol-requiring protein 1 (IRE-1), phospho-IRE-1α, C/EBP homologous protein (CHOP), and microtubule-associated protein-1 light-chain 3 (LC3) antibodies were purchased from Cell Signaling (MA, USA). Sequestosome 1 (SQSTM1, p62), voltage-dependent anion-selective channel protein 1 (VDAC1), and beclin-1 (BECN1) antibodies were purchased from Abcam (MA, USA). Actin and 75 kDa glucose regulated protein (Grp75) antibodies were purchased from Santa Cruz (CA, USA). After incubation with HRP-conjugated secondary antibodies for 2 h at room temperature and washing, the bands of interest were measured using an ATTO CS image analyzer 3.0 (ATTO Corp., Tokyo, Japan) [17 (link)].
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7

Comprehensive Antibody Profiling for Apoptosis and ER Stress

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The antibodies against procaspase-3, procaspae-9, procaspase-8, Bax, Bad, Bcl-xL and Bcl-2, apoptosis-inducing factor (AIF), poly(ADP-ribose) polymerase-1 (PARP-1) and C/EBP homologous protein (CHOP) were acquired from Cell Signaling Technology (Danvers, MA, USA). The antibodies against eukaryotic translation initiation factor 2 alpha (eIF2α), phospho-eIF2α, activating transcription factor 4 (ATF4), phospho-protein kinase RNA-like endoplasmic reticulum kinase (p-PERK), and inositol-requiring enzyme 1 alpha (IRE1α) were from Santa Cruz Biotechnology Inc. (Dallas, TX, USA). The antibodies against cleaved caspase-3, cleaved caspase-9, and β-actin were from EMD Millipore (Bellerica, MA, USA). The antibodies against activating transcription factor 6 (ATF6) alpha were from Abcam (Cambridge, MA, USA). The antibodies against cytochrome c (cyt c) were from Proteintech Group (Chicago, IL, USA). The secondary horseradish peroxidase-conjugated IgG was from GeneTex (Irvine, CA, USA). Protease inhibitor cocktail was obtained from Sigma-Aldrich Co. (St Louis, MO, USA). Polyvinylidene difluoride membranes and Chemiluminescent horseradish peroxidase substrate were purchased from Thermo Fisher Scientific (Waltham, MA, USA).
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8

Cantharidin-Induced Cell Apoptosis

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Cantharidin (chemically pure compound), 3-(4,5-dimethyl thiazol-2-yl-)-2,5-diphenyl tetrazolium bromide (MTT), and dimethyl sulfoxide (DMSO) was purchased from Sigma-Aldrich (St. Louis, MO, USA). The antibodies used in the this study were directed against the following: caspase-9, caspase-7, caspase-3, glucose-regulated protein (Grp)78, eIF-2α, phospho-eIF-2α, cytochrome c, AIF, Bax, Bid, Bak, Bcl-2, JNK, phospho-JNK, p38, phospho-p38, extracellular signal-regulated kinase (ERK), phospho-ERK (Santa Cruz Biotechnology, USA), caspase-12 (Becton Dickinson, San Jose, CA, USA), Grp94, and C/EBP homologous protein (CHOP) (Cell Signaling Technology, USA). The cell culture medium included Dulbecco's modified Eagle's medium with 45% Ham's F12 medium and 10% fetal calf serum, all purchased from Gibco/Invitrogen (Carlsbad, CA, USA). The chemiluminescence reagents were purchased from Amersham Biosciences, Sweden. All other chemical reagents which were no specified in this study were obtained from Sigma-Aldrich.
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9

Western Blot Analysis of Apoptosis and Autophagy

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Lysates were prepared from tumour cells and analysed by western blotting. Primary antibodies include cleaved caspase-3 (1:2000, Cell Signalling #9661), phospho-rpS6 (Ser240/244) (1:5000, Cell Signalling #5364), rpS6 (1:5000, Cell Signalling #2217), phospho-p70 S6K (Thr389) (1:1000, Cell Signalling #9205), p70 S6K (1:1000, Santa Cruz #sc-230), C/EBP homologous protein (Chop) (1:1000 Cell Signalling #2895), FIP200 (1:1000, Cell Signalling #12436), p62 (1:2000, Cell Signalling #39749), LC3B (1:2000 Cell Signalling #3868), Raptor (1:1000, Cell Signalling #2280), Rictor (1:1000, Cell Signalling #2114), acetyl-histone H3(Lys9) (1:2000, Cell Signalling #9649), vinculin (1:10,000, Sigma-Aldrich #V4505) and NRF2 (1:1000, GeneTex #103322). Horse radish peroxidase (HRP)-linked anti-rabbit immunoglobulin G (IgG) or anti-Mouse IgG (1:10,000, Cell Signalling) were used as secondary antibodies. WesternBright ECL HRP substrate (Advansta) was used for signal imaging.
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10

Apoptosis Pathway Regulation in Cells

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CWP232291 was obtained from JW Pharmaceutical Corporation (Seoul, Korea). The compound z-valine-alanine-aspartate-fluoromethylketone (ZVAD-FMK) was purchased from R&D Systems (Minneapolis, MN). The following primary antibodies were used: cleaved caspase-3, poly (ADP-ribose) polymerase (PARP), phospho-eIF2a serine 51 [peIF2a (serine-51)], eIF2a, inositol-requiring kinase 1 (IRE1), C/EBP-homologous protein (CHOP) (Cell Signaling Technology, Danvers, MA), AR, survivin, GAPDH, β-actin, bcl-2 (Santa Cruz Biotechnology, Dallas, TX), β-catenin (Merck Millipore, Burlington, MA) and AR-V7 (Precision Antibody, Columbia, MD).
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