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14 protocols using plv h1 ef1α puro

1

Molecular Cloning and Manipulation of ZEB1 and ATM

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The human complementary DNAs (cDNAs) fragment encoding the full-length ZEB1 sequence41 (link) was prepared by PCR and cloned into pLV-EF1-MCS-IRES-Bsd (Biosettia). The lentiviral-based vector pLV-H1-EF1α-puro (Biosettia) was used to express shRNAs in breast cancer cells. The human ATM promoter (−1534/+235) sequences were obtained by PCR from human genomic DNA and cloned into pGL3‑basic vector (Promega). Mutagenesis of the E2‑box in the human ATM promoter was performed using a QuikChange Site‑Directed Mutagenesis kit (Stratagene).
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2

Cloning and Verification of WIP1, MKK3E, and MKK6A Plasmids

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The full-length CDS fragment of WIP1 was generated by polymerase chain reaction (PCR) and inserted into pLV-EF1-MCS-IRES-Bsd (Biosettia, USA). Single-strand oligos of shRNAs specific for WIP1 were synthesized, annealed into double-stranded oligos, and inserted into pLV-H1-EF1α-puro (Biosettia) following the guidance of the manufacturer’s protocol. DNA sequencing was then used to verify the plasmids. The human MKK3E and MKK6A plasmids were described previously.39 (link) Primer sequences are provided in the Supplementary Materials (Table S2).
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3

Overexpression and Knockdown of ZEB1 in MDA-MB-231 Cells

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The human complementary DNA fragment encoding full-length ZEB1 was cloned into GV146 (Shanghai Gene chem, China), and the vector was transfected to MDA-MB-231 cells for 48 h to over-express ZEB1. The lentiviral-based vector pLV-H1-EF1α-puro (Biosettia, San Diego, USA) was used to express shRNA in MDA-MB-231 cells. Lentiviruses were generated by transfecting subcon uent HEK293T cells with lentiviral vectors and packaging plasmids by calcium phosphate transfection. Viral supernatants were collected after 48 h following transfection, centrifuged and ltered through 0.45-mm lters (Millipore, MA, USA).
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4

Lentiviral Plasmids for CCL16 Modulation

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shRNA targeting human CCL16 and a scrambled control sequence are listed in Table S1. Palindromic DNA oligos were annealed to form a double-stranded oligo and ligated to the linearized pLV-H1-EF1α-puro (Biosettia, cat. # B19) vector to generate circled pLV-H1-shCCL16-Puro. To construct the human CCL16 overexpression plasmid, the cDNA of CCL16 was cloned using the primer pairs listed in Table S1. The amplified fragments were finally ligated into pLV-EF1α-MCS-IRES-Puro (Biosettia, cat. # pLV-03) expression vector to generate pLV-EF1α-CCL16-Puro.
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5

Cloning and Expression of ZEB1, Ngn3 in Breast Cancer

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The human cDNA fragment encoding full-length ZEB1 and Ngn3 was prepared by PCR and cloned into pLV-EF1-MCS-IRES-Bsd (Biosettia, San Diego, USA). The lentiviral-based vector pLV-H1-EF1α-puro (Biosettia, San Diego, USA) was used to express shRNAs in breast cancer cells. The human Ngn3 full-length and truncated promoter sequences were obtained by PCR from human genomic DNA and cloned into the pGL3-basic vector (Promega, Wisconsin, USA). Primer sequences are listed in Supplementary Data.
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6

Lentiviral overexpression and knockdown of HTR1E

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The coding sequence of HTR1E was synthesized by Sangon Biotech (Shanghai, China) and cloned into plasmid pLV-EF1α-MCS-IRES-Bsd (Biosettia, San Diego, CA, USA). Stable HTR1E overexpressing was conducted in OVCAR-5 cell line. Lentivirus-based RNAi vector pLV-H1-EF1α-puro (Biosettia) with the insertion of shRNA templates were used to conduct HTR1E knocking down in SK-OV-3 cell line. Cells infected with lentivirus for knocking down or reconstituted expression were selected with 4 μg/mL of blasticidin or 10 μg/mL of puromycin (Thermo-Fisher Scientific, Waltham, MA, USA) for one week. The sequences of the shRNA used were as follow: shHTR1E-#1, 5' AAAAGCATGGCTATAAGACCCAAGATTGGATCCA 3'; shHTR1E-#2, 5' AAAAGCCAACTACCTAATCTGTTCTTTGGATCCA 3'; shCtrl, 5' AAAAGCAGTTATCTGGAAGATCAGGTTGGATC 3'.
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7

Screening of Small Molecule Modulators

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Acebutolol, alprenolol, atenolol, bucindolol, carazolol, carvedilol, CGP12177, ICI 118551, isoproterenol, labetalol, metoprolol, nadolol, nebivolol, pronethalol, timolol, and 2-{[β-(4-Hydroxyphenyl)ethyl]aminomethyl}-1-tetralone hydrochloride (HEAT HCl) were purchased from Tocris (Bristol, United Kindom). Propranolol HCl and 4-hydroxycarbazole were obtained from Sigma-Aldrich (St. Louis, MO) and bupranolol was obtained from Abcam (Cambridge, UK). All compounds were dissolved in DMSO to obtain a 10 mM stock concentration, which was stored at -20°C. EGF was purchased from Peprotech (Rocky Hill, NJ) and dissolved in sterile deionized water at a 10 ug/mL stock and stored at -80°C. Primers were purchased from IDT (Coralville, IA). The lentiviral vector pLV-H1-EF1α-puro, annealing buffer, packaging vector, and polybrene were purchased from Biosettia Inc. (San Diego, CA). 4-hydroxycarbazole (4-OHC) was purchased from Sigma Aldrich
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8

Overexpression and Knockdown of ZEB1 in MDA-MB-231 Cells

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The human complementary DNA fragment encoding full-length ZEB1 was cloned into GV146 (Shanghai Gene chem, China), and the vector was transfected to MDA-MB-231 cells for 48 h to over-express ZEB1. The lentiviral-based vector pLV-H1-EF1α-puro (Biosettia, San Diego, USA) was used to express shRNA in MDA-MB-231 cells. Lentiviruses were generated by transfecting subcon uent HEK293T cells with lentiviral vectors and packaging plasmids by calcium phosphate transfection. Viral supernatants were collected after 48 h following transfection, centrifuged and ltered through 0.45-mm lters (Millipore, MA, USA).
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9

Establishing Stable Cell Lines with shRNA

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ZR-75-1, BT-474, T-47D, MDA-MB-231, MDA-MB-453, MDA-MB-436, MDA-MB-435 and HCC1937 cells were obtained from the Cell Bank of Chinese Academy of Sciences (Shanghai, China). MCF7, 4T1, 4TO7 and EO771 cells were obtained from Dr. Ralph A. Reisfeld (The Scripps Research Institute, CA, USA). EMT6 was obtained from the Laboratory Animal Research Center of the Fourth Military Medical University (Xi’an, Shanxi, China).
shRNAs with the following sequences in Supplementary Table 1 were utilized. The targeting shRNAs were cloned into the pLv-H1-EF1α-puro or pLv-H1-EF1α-Bsd plasmid (Biosettia Inc., San Diego, CA, USA). Lentivirus infections were performed following the manufactures’ instructions. Stable polyclonal cell lines were selected by adding puromycin or blasticidin to the cell culture medium.
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10

Cloning and Mutagenesis of Zeb1 Promoter

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The human complementary DNA (cDNA) fragment encoding the full-length Zeb1 sequence51 (link) was prepared by PCR and cloned into pLV-EF1-MCS-IRES-Bsd (Biosettia). The lentiviral-based vector pLV-H1-EF1α-puro (Biosettia) was used to express shRNAs in breast cancer cells and HUVECs. The human ZEB1 promoter (−1915/+132) sequences were obtained by PCR from human genomic DNA and cloned into the pGL3-basic vector (Promega). Mutagenesis of NRE-I and NRE-II in the human Zeb1 promoter was performed using a QuikChange® Lightning Site-Directed Mutagenesis kit (Stratagene). Primer sequences are listed in Supplementary Table 3.
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