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3 protocols using picopure rna extraction buffer

1

Oocyte Isolation and RNA Extraction

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All women were stimulated with follitropin alpha (Hemeiqi®, Ferring, Germany), with daily injections of 150–300 IU. Pituitary suppression was performed with a GnRH antagonist (0.05 mg of Cetrorelix acetate, Tianxing®, Chengdu Tiantaishan Pharmaceutical Co., Ltd, China) administered daily from day 16 of stimulation. When three or more follicles of ≥18 mm of diameter were observed, final oocyte maturation was triggered with a dose of 6000-10000 IU of the human chorionic gonadotrophin (hCG, Livzon Pharmaceutical Group Inc, China). Oocyte collection was performed 36 hr later by means of ultrasound-guided transvaginal follicular aspiration.
Individual MII human oocytes were exposed to hyaluronidase (80 units/ml; Sigma-Aldrich, USA) and manipulated with a Stripper (Origio, USA) tip to remove all remaining cumulus cells, and then washed three times in Dulbecco's phosphate buffered saline with 0.01% polyvinylpyrrolidone (Sigma-Aldrich, USA). Samples were stored in PicoPure RNA extraction buffer (10 μl), heated to 42°C for 30 min, and subsequently stored at −80°C until total RNA purification as per manufacturer's protocol (Thermo Fisher Scientific, USA).
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2

Xenotransplanted Testis Cell Sorting

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Donor-derived cells purified from spermatogonial tubules were counted and divided into fractions for cell FACS analysis. Approximately 1–1.2 million cells were harvested from each of 2 xenotransplanted testes per cell line. The entire intratubular fraction of cells from each testis was individually analyzed on a Becton Dickinson FACs Aria II cell sorter. Sorting gates were established based on forward and side scatter as well as the level of mCherry expression after exclusion of dead cells or debris stained with DAPI. Cells positive for mCherry expression were directly sorted into a PBS supplemented with 10% FBS. The sorted fraction was reanalyzed on the sorter for purity determination. Subsequently, 90% of the sorted cells were pelleted and resuspended in PicoPure RNA extraction buffer (Thermo Fisher Scientific) for RNA analysis by sequencing. The remaining 10% of cells were resuspended in PBS, dropped onto glass slides and then fixed in 20% ice-cold methanol. Following fixation, cells were washed and rehydrated in PBS for immunocytochemical analysis.
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3

Isolation of Endothelial Cell Populations

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INF and uninflamed ears from individual animals were cut into small pieces and enzymatically digested in a 4-ml mixture of 10 mg/ml collagenase IV (Thermo Fisher Scientific), 5 mg/ml dispase II (Sigma-Aldrich), 0.1 mg/ml DNase I (Roche), and 1 mM CaCl2 (Sigma-Aldrich) in PBS (Thermo Fisher Scientific) at 37°C for 15 min in rotation. Suspensions were passaged through a 40-µm cell strainer (BD Biosciences), and resulting single-cell suspensions were stained at 4°C with APC/Cy7 anti-mouse CD45 (BioLegend), PE anti-mouse CD31 (BioLegend), APC anti-mouse Podoplanin (BioLegend), AF488 anti-mouse LYVE-1 (eBioscience), and 7-AAD (BioLegend). After excluding doublets and dead cells, the different EC populations (∼30,000 BECs, ∼5,000 colLECs, and ∼2,500 capLECs per mouse/condition) were isolated on a FACSAria Cell Sorter (70-µm nozzle) using BD FACSDiva software (both BD Biosciences) and sorted into PicoPure RNA extraction buffer (Thermo Fisher Scientific). RNA was isolated and genomic DNA was eliminated using the PicoPure RNA isolation kit (Thermo Fisher Scientific). RNA quality and concentration were analyzed with a Bioanalyzer (Agilent Technologies), and samples of the same animal with RNA integrity number >7 and minimum concentration of 200 ng/ml were further processed for RNA sequencing.
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