The largest database of trusted experimental protocols

17 protocols using micromass zq instrument

1

Purification and Characterization of Compounds

Check if the same lab product or an alternative is used in the 5 most similar protocols
Unless otherwise noted, reagents and solvents were obtained from commercial suppliers and were used without further purification. 1H NMR spectra were recorded on 500 MHz (Bruker A500), and chemical shifts are reported in parts per million (ppm, δ) downfield from tetramethylsilane (TMS). Coupling constants (J) are reported in Hz. Spin multiplicities are described as s (singlet), br (broad singlet), d (doublet), t (triplet), q (quartet), and m (multiplet). Mass spectra were obtained on a Waters Micromass ZQ instrument. Preparative HPLC was performed on a Waters Sunfire C18 column (19 × 50 mm, 5μM) using a gradient of 15–95% methanol in water or methanol in water containing 0.05% trifluoroacetic acid (TFA) over 22 min (28 min run time) or 35 min (45 min run time) at a flow rate of 20 mL/min.
+ Open protocol
+ Expand
2

Purification and Characterization of Organic Compounds

Check if the same lab product or an alternative is used in the 5 most similar protocols
Unless otherwise noted, reagents and solvents were obtained from commercial suppliers and were used without further purification. 1H NMR spectra were recorded on 500 MHz (Varian AS600), and chemical shifts are reported in parts per million (ppm, δ) downfield from tetramethylsilane (TMS). Coupling constants (J) are reported in Hz. Spin multiplicities are described as s (singlet), br (broad singlet), d (doublet), t (triplet), q (quartet), and m (multiplet). Mass spectra were obtained on a Waters Micromass ZQ instrument. Preparative HPLC was performed on a Waters Sunfire C18 column (19 mm × 50 mm, 5 μM) using a gradient of 15–95% methanol in water containing 0.05% trifluoroacetic acid (TFA) over 22 min (28 min run time) at a flow rate of 20 mL/min. Purities of assayed compounds were in all cases greater than 95%, as determined by reverse-phase HPLC analysis.
+ Open protocol
+ Expand
3

Characterization of Novel Compounds

Check if the same lab product or an alternative is used in the 5 most similar protocols
Unless otherwise noted, reagents and solvents were obtained from commercial suppliers and were used without further purification. 1H NMR and 13C NMR spectra were recorded on a 500 MHz (Bruker A500) spectrometer, and chemical shifts are reported in parts per million (ppm, d) downfield from tetramethylsilane (TMS). Coupling constants (J) are reported in Hz. Spin multiplicities are described as s (singlet), br (broad singlet), d (doublet), t (triplet), q (quartet), and m (multiplet). Mass spectra were obtained on a Waters Micromass ZQ instrument. Preparative HPLC was performed on a Waters Sunfire C18 column (19 × 50 mm, 5 μM) using a gradient of 15−95% methanol in water containing 0.05% trifluoroacetic acid (TFA) over 22 min (28 min run time) at a flow rate of 20 mL/min. Purities of assayed compounds were in all cases greater than 95%, as determined by reverse-phase HPLC analysis. The HPLC traces have been provided in Figure S7.
+ Open protocol
+ Expand
4

Characterization of Synthesized Compounds

Check if the same lab product or an alternative is used in the 5 most similar protocols
Unless otherwise noted, reagents and solvents were obtained from commercial suppliers and were used without further purification. 1H NMR spectra were recorded on a 500 MHz Bruker A500, and chemical shifts are reported in parts per million (ppm, δ) downfield from tetramethylsilane (TMS). Coupling constants (J) are reported in Hz. Spin multiplicities are described as s (singlet), br (broad singlet), d (doublet), t (triplet), q (quartet), and m (multiplet). Mass spectra were obtained on a Waters Micromass ZQ instrument. Preparative HPLC was performed on a Waters Sunfire C18 column (19 × 50 mm, 5 μM) using a gradient of 15–95% methanol in water or acetonitrile in water containing 0.05% trifluoroacetic acid (TFA) over 22 min (28 min run time) or 35 min (45 min run time) at a flow rate of 20 mL/min. The purity of all the final compounds is ≥95%, and it is measured by analytical reverse-HPLC using a gradient of 15–85% acetonitrile in water containing TFA over 2.5 min at a flow rate of 2 mL/min.
+ Open protocol
+ Expand
5

Characterization of ZAP-70 Inhibitor Compounds

Check if the same lab product or an alternative is used in the 5 most similar protocols
We describe the interaction of three small molecules, referred to as compounds A, B, and C, with ZAP-70 or Syk. These compounds were identified in a high throughput screen for ZAP-70 inhibitors; the detail of which will be published separately (Visperas et al. in preparation). The chemical structures of these compounds are shown in Figure 2. The compound suppliers are as follows: Compound A was obtained from InterBioScreen Ltd. (Supplier ID: STOCK5S-74623). Compound B was obtained from Pharmeks Ltd. (Supplier ID: PHAR025826). Compound C was obtained from ChemBridge Corp. (Supplier ID 7997218). The compounds were obtained in powdered form and dissolved at 50 mM in DMSO. The purity of all compounds was assessed and their correct masses verified by LC/MS. All compounds submitted for testing were judged to be of 95% or higher purity based on analytical LC-MS analysis on a Waters Micromass ZQ instrument, through UV absorbance at 254 nm and light scattering. Separations were carried out on an XTerra® MS C18 5μm 4.6×50mm column at ambient temperature using a mobile phase of water-methanol containing 0.1% formic acid. Chemical identity was confirmed in positive ion mode by the presence of the anticipated molecular weight M+1 ion. No purification was performed on the compound solutions.
+ Open protocol
+ Expand
6

Paclitaxel and Pacific Blue Conjugation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Commercial Paclitaxel (PTX) was purchased by Carbosynth (Compton, Berkshire, UK). Pacific blue activated as N-Hydroxysuccinimide ester (PB-NHS) was purchased from AAT Bioquest (Sunnyvale, CA, USA). UDCA and CDCA, were kindly furnished by ICE SpA (Reggio Emilia, Italy). All the chemicals were used without further purification. The reactions were monitored by thin layer chromatography (TLC) on pre-coated silica gel F254 plates (thickness 0.25 mm, Merck, Darmstadt, Germany). UV light spotted the presence of PTX and Pacific Blue, while phosphomolybdic acid solution was used as a spray to develop steroids spots. Flash column chromatography was performed on silica gel (60 a, 230–400 mesh). NMR spectra were recorded with a Varian Mercury 400 MHz instrument (Varian, Palo Alto, CA, USA), or Varian Mercury 300 MHz instrument (Varian, Palo Alto, CA, USA). HRMS spectra were acquired with a Waters Micromass ZQ instrument (Waters Corp, Milford, MA, USA). Preparative and analytical HPLC was executed on Xterra C18 column (Waters Corp., Milford, MA, USA) with a Jasco LC-2000 plus instrument (Jasco, Easton, MD, USA). Tetrahydrofuran (THF) was used as freshly distilled on sodium/benzophenone with standard procedures. N,N-dimethylformamide (DMF) was dried over freshly activated molecular sieves for at least one day before use.
+ Open protocol
+ Expand
7

Synthesis and Characterization of Dimers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Reactions for the synthesis of dimers were monitored by thin layer chromatography (TLC) on precoated silica gel plates F254 (Merck, Darmstadt, Germany) and column chromatography was performed on Merck Kieselgel 60 (70–230 mesh). For the ESI MS analyses, a Micromass ZQ Instrument (Waters, Milan, Italy) equipped with an electrospray source was used. MALDI TOF mass spectrometric analyses were performed on a Voyager-De Pro MALDI mass spectrometer (PerSeptive Biosystems, Framingham, MA, USA). Absorption spectra were measured with a Cary 100 Scan UV-Vis spectrophotometer (Varian, Santa Clara, CA, USA) using a 1-cm path length quartz cell.
+ Open protocol
+ Expand
8

Spectroscopic Characterization of Organic Compounds

Check if the same lab product or an alternative is used in the 5 most similar protocols
1H NMR and 13C NMR were recorded on a Bruker Avance 300 (1H: 300 MHz, 13C: 75.46 MHz) spectrometer using residual CHCl3 as an internal reference (7.26 ppm) and at 293 K unless otherwise indicated. The chemical shifts (δ) and coupling constants (J) are expressed in ppm and Hz. The following abbreviations were used to explain the multiplicities: s = singlet, d = doublet, t = triplet, q = quartet and m = multiplet. Fourier transform infrared (FT-IR) spectra were recorded on a PerkinElmer FT spectrometer Spectrum two (UATR two). For electrospray ionization (ESI) high-resolution mass spectrometry (HRMS) analyses, a Waters Micromass ZQ instrument equipped with an electrospray source was used in the positive and/or negative mode. Matrix-assisted laser desorption ionization time-of-flight (MALDI-TOF) mass spectrometric analyses were performed on a PerSeptive Biosystems Voyager-De Pro MALDI mass spectrometer in the linear mode using 3,4-dihydroxybenzoic acid as the matrix. Analytical thin-layer chromatography was performed using silica gel 60 F254 precoated plates (Merck) with visualization by ultraviolet light, potassium permanganate, or sulfuric acid. Flash chromatography was performed on a silica gel (0.043–0.063 mm).
+ Open protocol
+ Expand
9

Purification and Characterization of Compounds

Check if the same lab product or an alternative is used in the 5 most similar protocols
Unless otherwise noted, reagents and solvents were obtained from commercial suppliers and were used without further purification. 1H NMR spectra were recorded on Bruker A500 (500 MHz), and chemical shifts are reported in parts per million (ppm, δ) downfield from tetramethylsilane. Coupling constants (J) are reported in Hz. Spin multiplicities are described as s (singlet), br (broad singlet), d (doublet), t (triplet), q (quartet), and m (multiplet). Mass spectra were obtained on a Waters Micromass ZQ instrument. Preparative HPLC was performed on a Waters Sunfire C18 column (19 × 50 mm, 5 µM) using a gradient of 15–95% methanol in water containing 0.05% trifluoroacetic acid over 22 min (28 min run time) at a flow rate of 20 mL/min. Purities of assayed compounds were in all cases greater than 95%, as determined by reverse-phase HPLC analysis. Details of chemical synthesis and the relevant NMR spectra are included in Supplementary Method 1.
+ Open protocol
+ Expand
10

NMR and Mass Spectrometry Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
Solvents and reagents were obtained from commercial sources and were used without further purification. NMR spectra were recorded on a Varian Oxford AS600 600 MHz instrument. NMR chemical shifts are expressed in ppm relative to internal solvent peaks, and coupling constants are measured in Hz (br = broad). Mass spectra were recorded on a Waters Micromass ZQ instrument using an ESI source coupled to a Waters 2525 HPLC system operating in reverse mode with Waters SunfireTM C185 uM 4.6×50 mm column. Flash chromatography was performed using a Biotage Isolera One flash purification system.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!