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6 protocols using p ndrg1

1

Compound C and Sodium Palmitate Signaling Pathway Analysis

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Compound C was obtained from Enzo Life Sciences. Sodium Palmitate is from NU-CHEK Prep Inc. For western blotting, anti-Flag M2 (RRID:AB_259529) antibody was purchased from Sigma, antibodies against SGK1 (RRID:AB_2687476), SGK2 (RRID:AB_10828732), SGK3 (RRID:AB_10949507), HSP90 (RRID:AB_2233307), Akt (RRID:AB_915783), p-Akt (Thr308) (RRID:AB_2255933), p-Akt (Ser473) (RRID:AB_2315049), NDRG1 (RRID: AB_11140640), p-NDRG1(Thr346) (RRID:AB_10693451), FoxO1 (RRID:AB_2106495), p-FoxO1/3 (Thr24/32) (RRID:AB_2106814), S6K (RRID:AB_390722), p-S6K (Thr389) (RRID:AB_2269803), S6 (RRID:AB_331355), p-S6 (S240/244) (RRID:AB_10694233), 4EBP1 (RRID:AB_2097841), p-4EBP1 (Thr37/46) (RRID:AB_560835), p-4EBP1 (Ser65) (RRID:AB_330947), AMPKα (RRID:AB_10624867), p-AMPKα (Thr172) (RRID:AB_331250), p-AMPKα(Ser485/491) (RRID:AB_331250), ACC1 (RRID:AB_2219397), p-ACC1 (Ser79) (RRID:AB_330337), Raptor (RRID:AB_561245)and p-Raptor (Ser792) (RRID:AB_2249475) were obtained from Cell Signaling Technology. Anti-actin (C4) was obtained from Abcam.
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2

Protein Expression Profiling in Cells

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Cell Signaling (Beverly, MA) antibodies: EGF receptor variant III (EGFRvIII) (Cat# 64952), p-Akt (S473; Cat# 4060), p-NDRG1 (T346; Cat# 5482), Rictor (Cat# 2114), 5-methylcytosine (5-mC) (Cat# 28692), DNMT3A (Cat #3598), acetylated-lysine (Cat# 9441), H3 p.K27me2 (Cat# 9755), H3 p.K27me3 (Cat# 9733), Histone H3 (Cat# 4499), EZH2 (Cat# 5246), FAK (Cat# 13009), p-FAK (Y397; Cat# 8556), β-actin (Cat# 3700), GAPDH (Cat# 5174), HRP-linked anti-rabbit IgG (Cat# 7074) and HRP-linked anti-mouse IgG (Cat# 7076). Santa Cruz (Dallas, TX) antibodies: p-PKC α (S657; Cat# sc-377565). GeneTex (Irvine, CA) antibodies: 5-mC (Cat# GT4111). Thermo Fisher antibodies: GRIA1 (Cat# PA5-95207). DAKO (Glostrup, Denmark) antibodies: Synaptophysin (Cat# M731529). Millipore (Burlington, MA) antibodies: Nestin (Cat# MAB5326).
Reagents used are sodium acetate (Sigma; Cat # S5636), Trichostatin A (TSA) (Sigma; Cat# T1952), PP242 (Cayman Chemical, Ann Arbor, MI; Cat# 13643), Akti-1/2 (Calbiochem, La Jolla, CA; Cat# 124018), Bisindolylmaleimide I (Bis-I) (Santa Cruz; Cat# sc-24003), GSK 650394 (Tocris Bioscience, Bristol, UK; Cat# 3572/10), GSKJ4 (Sigma; Cat# T1952), GSK126 (MedChem Express, Monmouth Junction, NJ; Cat# HY-13470), GSK2256098 (Selleck Biotech, Kanagawa, Japan; Cat# S8523) and Philanthotoxin-7,4 (PhTx-74) (Abcam, Cambridge, UK; Cat# ab120257).
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3

Immunohistochemical Profiling of Cell Signaling

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Immunohistochemistry (IHC) for all targets was performed using standard protocols on the automated immunohistochemistry staining system Discovery XT (Roche/Ventana, Tucson, Arizona, USA) and the LEICA BOND-III automated stainer (Leica, Wetzlar, Germany) respectively. The following antibodies were used: PD-L1 (Cell Signaling, Boston, U.S.A.), p-S6K1 (Cell Signaling, Boston, U.S.A.), p-4EBP1 (Cell Signaling, Boston, U.S.A.), p-RPS6 (Ser 235/236 and Ser240/244, Cell Signaling, Boston, U.S.A.), p-PRAS40 (Cell Signaling, Boston, U.S.A.), p-NDRG1 (Cell Signaling, Boston, U.S.A.), p-mTOR (S2448, Cell Signaling, Boston, U.S.A.), IDH1_R132H (Dianova, Eching, Germany) and BRAF V600E (DCS, Hamburg, Germany) [27 (link)].
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4

Compound C and Sodium Palmitate Signaling Pathway Analysis

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Compound C was obtained from Enzo Life Sciences. Sodium Palmitate is from NU-CHEK Prep Inc. For western blotting, anti-Flag M2 (RRID:AB_259529) antibody was purchased from Sigma, antibodies against SGK1 (RRID:AB_2687476), SGK2 (RRID:AB_10828732), SGK3 (RRID:AB_10949507), HSP90 (RRID:AB_2233307), Akt (RRID:AB_915783), p-Akt (Thr308) (RRID:AB_2255933), p-Akt (Ser473) (RRID:AB_2315049), NDRG1 (RRID: AB_11140640), p-NDRG1(Thr346) (RRID:AB_10693451), FoxO1 (RRID:AB_2106495), p-FoxO1/3 (Thr24/32) (RRID:AB_2106814), S6K (RRID:AB_390722), p-S6K (Thr389) (RRID:AB_2269803), S6 (RRID:AB_331355), p-S6 (S240/244) (RRID:AB_10694233), 4EBP1 (RRID:AB_2097841), p-4EBP1 (Thr37/46) (RRID:AB_560835), p-4EBP1 (Ser65) (RRID:AB_330947), AMPKα (RRID:AB_10624867), p-AMPKα (Thr172) (RRID:AB_331250), p-AMPKα(Ser485/491) (RRID:AB_331250), ACC1 (RRID:AB_2219397), p-ACC1 (Ser79) (RRID:AB_330337), Raptor (RRID:AB_561245)and p-Raptor (Ser792) (RRID:AB_2249475) were obtained from Cell Signaling Technology. Anti-actin (C4) was obtained from Abcam.
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5

Examining Phosphorylation Signaling Pathways

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The following antibodies were purchased from Cell Signaling Technologies: pNDRG1, pPDK1, pAKT308, pAKT473, pGSK3β (Ser 9), pPRAS40 (Thr 246), pFOXO3a (Thr 32), pERK1/2, AKT, FOXO3a, pP70S6K (Thr 389), pS6K (Ser 235/236), PRAS40, GSK3b, ERK1/2, SGK3, cyclin D1, PTEN, P70S6K, and S6. Antibodies against β-actin, SGK1, PKC, and tubulin were purchased from Santa Cruz Biotechnology. 4-Hydroxytamoxifen and antibodies against S100 were purchased from Sigma. Synthesis of the PDK1 inhibitor GSK2334470 was performed as previously described (5 (link)).
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6

Prostate Cancer Cell Proliferation Assay

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For Western Blotting, 2 million LNCaP (ATTC) cells were plated on 60 mm dishes in RPMI-1640 containing 10% FBS and 1% pen-strep antibiotic. After 24 h plating cell media was replaced with RPMI-1640 containing 10% charcoal stripped fetal bovine serum to decrease androgen interference from the media. Cells were either transfected with SGK-DN or treated with drug (500 nM–100 μM and treated with the synthetic androgen analog R1881 (1 nM). Cells were treated at 0, 12 and 24 h and harvested 32 h after first treatment. Proteins were separated by gel electrophoresis using 50 μg of protein per well. P-NDRG1 (Cell Signaling) was normalized to GAPDH and data presented as fold change from control. For CyQUANT cell proliferation assay (Life Technologies), LNCaP cells were plated at 25,000 cells/well in a 96 well plate in plating media. 24 h after plating, media was changed to RPMI-1640 containing 10% charcoal stripped fetal bovine serum. Cells were treated with either 5377051, R1881 (1 nM) or both every 24 h for 72 h. Cell proliferation was measured using the manufacturer’s protocol.
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