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142 protocols using dm3000 microscope

1

Histological and Apoptosis Analysis of Ovarian Tissues

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Then, ovarian tissues were fixed in 4% paraformaldehyde, embedded in paraffin, sectioned at 4 μm thickness, and stained with hematoxylin and eosin (H&E). Then, sections were viewed and photographed using a Leica DM3000 microscope (Leica, Germany). TUNEL staining was performed to assess the cell apoptosis in ovarian tissues. Briefly, ovarian tissue sections were incubated with the TUNEL reaction mixture in a humidified chamber at 37°C for 1 h (Beyotime Biotechnology Co., Ltd., Shanghai) and further incubated with peroxidase-conjugated HRP antibody at 37°C for 30 min. Then, immunoreactivity was visualized using 3,3′-diaminobenzidine (DBA), and the TUNEL-positive cells in ovarian tissue sections were observed and photographed using a Leica DM3000 microscope (Leica, Germany).
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Transwell Assay for Cell Invasion

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Cell invasion was analyzed using 8-μm pore Transwell inserts (Cat No: 3422, Corning, Inc., New York, NY, USA) coated with a Matrigel® growth factor reduced basement membrane matrix (Cat No: 356230, Corning, Inc., Corning, NY, USA) for 2 h at 37 °C. Cells in serum-free medium containing 50 μM of eupatilin were plated in the upper chamber, while a medium containing 10% FBS was added to the lower wells. After cells were incubated for 16 h at 37 °C in a CO2 incubator, cells that had not invaded were removed with a cotton swab. For the evaluation of cells that invaded onto the lower surface, inserts were fixed in methanol for 10 min. The Transwell membranes were then air-dried and stained using hematoxylin (Sigma) for 30 min. The hematoxylin-stained cells were counted using Leica’s DM3000 microscope. Cell migration was also analyzed using culture-insert 2-well in µ-dish 35 mm (Cat No: 81176, ibidi GmbH, Munich, Germany) according to the manufacturer’s instructions. The degree of migration to the cell-free gap during 24 h of treatment with 50 μM of eupatilin was observed through Leica’s DM3000 microscope. Based on the gap closure, the migration of cells was quantified.
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Intestinal Morphology Assessment in Piglets

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Formalin-fixed duodenum, jejunum, ileum, and colon samples were embedded in paraffin wax. Segment cross sections were microtomed at approximately 5 μm thick and stained with hematoxylin and eosin (H&E). In each section, villus height and associated crypt depth were measured using a DM3000 microscope (Leica Microsystems, Wetzlar, Germany). Images were obtained via using a DM3000 microscope (Leica Microsystems, Wetzlar, Germany). For each section, measurements of 6, well-orientated and intact villi were examined in each piglets’ duodenum, jejunum, and ileum. In the end, the mean villus height was then calculated per piglet with Image-Pro software (Media Cybernetics, Rockville, MD, United States). Histopathologic damage scores were determined according to the statement in Feng’s publication (11 (link)).
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Histological Analysis of Intestinal Morphology

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Formalin-xed duodenum, jejunum, ileum, and colon samples were embedded in para n wax. Segment cross sections were microtomed at approximately 5μm thick and stained with haematoxylin and eosin (H&E). In each section, villus height and associated crypt depth were measured using a DM3000 microscope (Leica Microsystems, Wetzlar, Germany). Images were obtained via using a DM3000 microscope (Leica Microsystems, Wetzlar, Germany). For each section, measurements of 6, wellorientated and intact villi were examined in each piglets' duodenum, jejunum, and ileum. In the end, the mean villus height was then calculated per piglet with Image-Pro software (Media Cybernetics, Rockville, MD). Histopathologic damage scores were determined according to the statement in Feng's publication [11] .
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5

Histological Evaluation of Rat Testes

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After extraction, the appearance of the testes and the state of the parenchyma on the cut were assessed and weighed (in grams). Then they were cut parallel to the sagittal plane every 2 mm, fixed in Bouin’s solution; after insertion (apparatus for histological tissue guiding, Leica Biosystems, Wetzlar, Germany), they were embedded in paraffin blocks, from which serial sections (2 µm thick) were prepared, dewaxed, dehydrated and stained with hematoxylin and eosin (H&E) for histological evaluation.
Morphological and morphometric analysis was carried out in 10 randomly selected fields of view of the microscope at ×100 and ×200 magnification in 4 random sections from each sample, moving the slides at equal intervals along the X and Y axes, using a semi-automatic image analyzer. Light microscopy was performed using a video microscopy system (Leica DM3000 microscope, Leica Biosystems, Wetzlar, Germany; DFC450 C camera; Platrun LG computer), and morphometric data were obtained using software for image processing and analysis (Leica Application Suite (LAS) Version 4.9.0) (Figure 1). The spermatogenic cycle of rats, which includes 14 consecutive stages, was assessed according to Chermont, Leblond and Messier (1959). Testicular assessment was carried out according to S. Johnsen criteria modified by De Kretser and A. Holstein (Table 1).
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Histological Analysis of Rat Cardiomyocytes

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The rats' hearts were harvested and fixed in 4% formaldehyde solution for at least 24 h and embedded in paraffin. The paraffin-embedded specimens were cut into sections (3 μm thick) and stained with hematoxylin-eosin. The images were digitally captured (magnification: ×400) using a Leica DM3000 microscope (Leica Biosystems, Germany). Cardiomyocyte stained cross-sectional areas of each group were measured and digitalized by Image-Pro Plus 6.0 software (Media Cybernetics, Silver Spring, MD, USA). CSA/control ratios of each group were calculated and analyzed [28 (link)].
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7

Proximity Ligation Assay for Protein Interactions

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Proximity ligation assay (PLA) was performed using the Duolink®In Situ Detection Reagents Orange kit (#DUO92007, Sigma-Aldrich). Briefly, MPM primary cells (5x104) were seeded onto round coverslips and allowed to grow to 70% confluence. Cells were fixed with 3% PFA, for 15 min at RT in the dark, and then permeabilized using 0.1% Triton X-100 for 10 min. Non-specific binding was blocked using Duolink Blocking Solution for 1h at RT. Cells were then incubated with primary antibodies diluted in Duolink Antibody Diluent O/N at 4°C. Following washing in Wash Buffer A (10 mM Tris, 150 mM NaCl, 0.05% Tween 20), cells were incubated with secondary antibodies conjugated with PLUS and MINUS probes, for 1h at 37°C. Negative controls included only single primary or secondary antibodies. After two washing steps in Wash Buffer A, cells were incubated with the ligation-ligase solution for 30 min at 37°C, followed by an incubation with amplification-polymerase solution, for over 90 min at 37°C. Cells were washed in the Wash Buffer B (200 mmol/L Tris, 100 mmol/L NaCl) and coverslips were mounted in Fluorescence Mounting Medium with DAPI. Images were acquired using Leica DM3000 microscope (Leica, Wetzlar, Germany) and a Leica DFC320 digital camera.
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8

Adipocyte Morphometric Analysis

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Histological sections (8 μm) were cut from paraffin‐embedded tissue, mounted on microscope glass slides, and dried overnight in an incubator at 37°C. Sections were stained with hematoxylin and eosin. Digital images were captured with the use of a Leica DFC320 digital camera (Leica, Rijswijk, the Netherlands) at 20× magnification (Leica DM3000 microscope, Leica, Rijswijk, the Netherlands). Computerized morphometric analysis (Leica QWin V3, Cambridge, UK) of individual adipocytes was performed by measuring approximately 400 adipocytes per sample.
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9

Immunofluorescence Staining of Endothelial Cells

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DECs, labelled with the fluorescent dye FAST DiI (Molecular Probes, Invitrogen), were seeded onto 8-chamber culture slides (BD Biosciences Discovery Labware, Milan, Italy), previously coated with 2 µg/cm2 fibronectin (Roche). After fixation with 1% paraformaldehyde and permeabilization with FIX & PERM kit, solution B (Società Italiana Chimici, Rome, Italy), cells were incubated with 10 µg/mL primary monoclonal antibody (cloneF8/86) mouse anti-human vWF (Dako) or mouse anti-human vascular endothelial (VE)-cadherin (kindly provided by Prof. Dejana from the Institute of Molecular Oncology, Milan, Italy) for 1 h at room temperature (RT), followed by incubation with fluorescein isothiocyanate (FITC)-conjugated goat anti-mouse IgG (Dako) for 1h at RT. Images were acquired with a Leica DM3000 microscope (Leica, Wetzlar, Germany) and collected using a Leica DFC320 digital camera (Leica).
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10

Adipose Tissue Biopsy and Analysis

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After an overnight fast, abdominal subcutaneous adipose tissue (AT) needle biopsies were collected under local anesthesia lateral from the umbilicus in a subgroup of participants (AXOS n = 15, placebo n = 15). Biopsy specimens were fixed overnight in 4% paraformaldehyde and embedded in paraffin. Histological sections were cut to 8 μm slices, mounted on microscope glass slides and dried overnight at 37C. After hematoxylin eosin staining, digital imaging was performed using Leica DFC320 digital camera (Leica, Rijswijk, Netherlands) at × 20 magnification (Leica DM3000 microscope; Leica). Computerized morphometric measurements of individual adipocytes were performed as previously described.33 (link) For AT mRNA expression, total RNA was extracted using TRIzol (Invitrogen, Breda, The Netherlands) for cDNA synthesis and real-time qPCR (iCycler, Bio-Rad, Veenendaal, NL, U.S.; primer sequences Supplemental Table 6). Results were normalized to 18S rRNA and expressed relative to baseline expression according to ∆∆Ct method.
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