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19 protocols using hepes 1m

1

Preparation and Transfection of Mouse Embryonic Fibroblasts

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Mouse embryonic fibroblasts (MEFs) were cultured as previously described72 (link), using Dulbecco’s modified eagle medium (DMEM, Thermofischer Scientific, 41965-039) supplemented with 10% v/v FBS (Thermofischer Scientific, 10270-106), 1% v/v penicillin-streptomycin (Thermofischer Scientific, 10378-016), and 1.5% v/v HEPES 1M (Sigma Aldrich, H0887). Cell cultures were routinely checked for mycoplasma. CO2-independent media was prepared by using CO2-independent DMEM (Thermofischer Scientific, 18045054) supplemented with 10% v/v FBS, 1% v/v penicillin-streptomycin, 1.5% v/v HEPES 1M, and 2% v/v L-Glutamine (Thermofischer Scientific, 25030-024). Media for AFM experiments was supplemented with Rutin (ThermoFischer Scientific, 132391000) 10 mg/l right before the experiment. Importazole (Sigma Aldrich) was used at 40 μM concentration for 1 h56 (link). Cells were transfected the day before the experiment using Neon transfection device (ThermoFischer Scientific) according to manufacturer’s instructions. Cells were seeded ~4 h before the experiment.
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2

Preparation and Transfection of Mouse Embryonic Fibroblasts

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Mouse embryonic fibroblasts (MEFs) were cultured as previously described72 (link), using Dulbecco’s modified eagle medium (DMEM, Thermofischer Scientific, 41965-039) supplemented with 10% v/v FBS (Thermofischer Scientific, 10270-106), 1% v/v penicillin-streptomycin (Thermofischer Scientific, 10378-016), and 1.5% v/v HEPES 1M (Sigma Aldrich, H0887). Cell cultures were routinely checked for mycoplasma. CO2-independent media was prepared by using CO2-independent DMEM (Thermofischer Scientific, 18045054) supplemented with 10% v/v FBS, 1% v/v penicillin-streptomycin, 1.5% v/v HEPES 1M, and 2% v/v L-Glutamine (Thermofischer Scientific, 25030-024). Media for AFM experiments was supplemented with Rutin (ThermoFischer Scientific, 132391000) 10 mg/l right before the experiment. Importazole (Sigma Aldrich) was used at 40 μM concentration for 1 h56 (link). Cells were transfected the day before the experiment using Neon transfection device (ThermoFischer Scientific) according to manufacturer’s instructions. Cells were seeded ~4 h before the experiment.
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3

Preparation and Transfection of Mouse Embryonic Fibroblasts

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Mouse embryonic fibroblasts (MEFs) were cultured as previously described72 (link), using Dulbecco’s modified eagle medium (DMEM, Thermofischer Scientific, 41965-039) supplemented with 10% v/v FBS (Thermofischer Scientific, 10270-106), 1% v/v penicillin-streptomycin (Thermofischer Scientific, 10378-016), and 1.5% v/v HEPES 1M (Sigma Aldrich, H0887). Cell cultures were routinely checked for mycoplasma. CO2-independent media was prepared by using CO2-independent DMEM (Thermofischer Scientific, 18045054) supplemented with 10% v/v FBS, 1% v/v penicillin-streptomycin, 1.5% v/v HEPES 1M, and 2% v/v L-Glutamine (Thermofischer Scientific, 25030-024). Media for AFM experiments was supplemented with Rutin (ThermoFischer Scientific, 132391000) 10 mg/l right before the experiment. Importazole (Sigma Aldrich) was used at 40 μM concentration for 1 h56 (link). Cells were transfected the day before the experiment using Neon transfection device (ThermoFischer Scientific) according to manufacturer’s instructions. Cells were seeded ~4 h before the experiment.
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4

Exosome Treatment of HEPA-RG and LX2 Cell Lines

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The human HEPA-RG hepatoma cell line (Thermo Fisher Scientific, Waltham, MA, USA) was cultured using a hepatocyte bullet kit medium added with 10% FBS, depleted of exosomes (Lonza Biowhittaker, Oslo, Norway), and with 1% of 100 mM Antibiotic-Antimycotic (penicillin 10,000 91 u/mL, streptomycin 10,000 u/mL, (Lonza Biowhittaker, Oslo, Norway). The LX2 Human Hepatic Stellate cell line (Millipore, Merck Life Science, Milan, Italy) was cultured using Dulbecco’s Modified Eagle Medium (DMEM) (Thermo Fisher Scientific, Waltham, MA, USA), added with 10% of FBS depleted exosomes, 1% of 100 M Antibiotic-Antimycotic, 2.5% of HEPES 1M (N-2-hydroxyethylpiperazine-N-2-ethane sulfonic acid) (Gibco™, ThermoFisher Scientific, Waltham, MA, USA) and 1% of 100 mM Sodium Pyruvate (Gibco™, ThermoFisher Scientific, Waltham, MA, USA). For all treatments with exosomes, both cell lines were cultured on semi-confluent cell monolayers and were treated with exosomes derived from patients at a concentration of µg exosome proteins/µL of medium, specifically at 20 µg/µL for 24, 48, and 72 h.
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5

Osteogenic Differentiation of Mesenchymal Cells

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Dulbecco’s modified eagle medium (DMEM), fetal bovine serum (FBS), hydrochloric acid (36.5% to 38.0% w/w), and HEPES (1M) were ordered from Thermo Fisher Scientific (Hampton, NH). Eagle’s Minimum Essential Media was purchased from ATCC and phosphate-buffered saline (PBS) (1X) were purchased from Mediatech (Manassas, VA). Hygromycin was ordered from Calbiochem (La Jolla, CA). Sodium chloride (≥99%), calcium chloride (≥96%), dexamethasone (≥97%), β-glycerophosphate disodium salt hydrate (≥99%), L-ascorbic acid (99%), alizarin red stain (pH 4), cetylpyridinium chloride, and glycerol (≥99.5%) were all purchased from Sigma-Aldrich (St. Louis, MO). Microplate of 96-well plates and neolite reagent were ordered from Perkin-Elmer (Waltham, MA). Deionized water with a resistivity of 18.2 MΩ•cm was generated using a Millipore MilliQ system (EMD Millipore, Billerica, MA). Powder 11-mercapto-l-undecanal disulfide [-S(CH2)10CHO]2 was purchased from ProChimia (Gdansk, Poland). Acetic acid glacial and 200 proof pure ethanol were purchased from VWR (King of Prussia, PA).
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6

AMPA-induced Calcium Imaging of Neurons

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Sera or antibody diluted in neuronal differentiation medium was added after about 3 weeks to the co-culture and was incubated for 3 h. For FDSS, medium was replaced by Ca2+ buffer (50 ml HBSS 10x (ThermoFisher, cat-# 14065049), 10 ml HEPES 1 M (ThermoFisher, cat-# 15630056), 440 ml dH2O and 375 µl CaCl2 (1 M). After 40 min, all plates were read by FDSS/µCELL Functional Drug Screening System (Hamamatsu, cat-# C13299) after injection of 0.5 µM AMPA (Sigma, cat-# A6816). Analysis was done with Hamamatsu software.
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7

DRG Axonal Extension on PLA-PPy Substrates

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DRG from E10 chick embryos (n=5 per group) were cultivated during 3 days on NF (PLA-18.2% PPy) and MF (PLA-3.5% PPy) substrates in order to study the axonal extension on both types of substrates.
DRG were grown for 3 days in Ham F12 culture medium (11765054, Thermo Fisher Scientific) with 1% HEPES 1M (15630049, Thermo Fisher Scientific), 1% L-Glutamine 200 mM (25030024, Thermo Fisher Scientific), 1% N2 supplement (17502048, Thermo Fisher Scientific), 1% Penicillin/Streptomycin (15140122, Life Technologies) and 10 ng/mL of nerve growth factor (NGF) (13257019, Thermo Fisher Scientific).
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8

Cell Culture of TNBC and CRC Lines

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MDA-MB-468 (HTB-132, ATCC) and MDA-MB-231 (HTB-26, ATCC) TNBC cell lines and HCT116 (CCL-247, ATCC) colorectal cancer cell line were cultured in RPMI 1640 media supplemented with GlutaMAX (61870, Life technologies), 10% fetal Bovine serum (Lonza) and 1% HEPES 1M (H0887, ThermoFisher), in a humidified atmosphere containing 5% CO2 at 37°C. In these culture conditions, MDA-MB-468, MDA-MB-231 and HCT116 cell lines have doubling times equal to roughly 28, 36 and 18 hours (h), respectively. Each cell line was validated through short tandem repeat (STR) profiling (Table 1).
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9

Culturing Mouse Embryonic Fibroblasts

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Mouse embryonic fibroblasts (MEFs) were cultured as previously described (60), using Dulbecco's modified eagle medium (DMEM, Thermofischer Scientific, 41965-039) supplemented with 10% FBS (Thermofischer Scientific, 10270-106), 1% penicillinstreptomycin (Thermofischer Scientific, 10378-016), and 1.5% HEPES 1M (Sigma Aldrich, H0887). Cell cultures were routinely checked for mycoplasma. CO2-independent media was prepared by using CO2-independent DMEM (Thermofischer Scientific, 18045 -054) supplemented with 10% FBS, 1% penicillin-streptomycin, 1.5% HEPES 1M, and 2% L-Glutamine (Thermofischer Scientific, 25030-024). Media for AFM experiments was supplemented with Rutin (ThermoFischer Scientific, 132391000) 10 mg/l right before the experiment. Importazole (Sigma Aldrich) was used at 40 μM concentration for 1 h (61). Cells were transfected the day before the experiment using Neon transfection device (ThermoFischer Scientific) according to manufacturer's instructions. Cells were seeded ~4 h before the experiment.
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10

Prostate Cell Lines Cultivation Protocol

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Human prostate cell lines were purchased from the American Type Culture Collection (ATCC; Rockville, MD, USA) and maintained at 37  °C in humidified atmosphere at 5% CO2. RWPE-1 cells (immortalized cells from non-tumorigenic prostate tissue) were cultured in keratinocyte serum free medium (K-SFM, Cat. N. 17005034, Gibco®, Thermo Fisher Scientific; Waltham, MA, USA) supplemented with 0.05 mg/mL bovine pituitary extract and 5 ng/mL human recombinant epidermal growth factor. LNCaP cells (malignant prostate cells derived from a lymph node metastasis) were cultured in DMEM 1.0 g/L glucose (Cat. N. P04-01550, Pan Biotech, Aidenbach, Germany,) supplemented with 10% fetal bovine serum (Cat. N. 10270106, Gibco®), 1% HEPES 1M pH 7.2 and 1% penicillin-streptomycin (Gibco®). All cells were checked periodically for mycoplasma infection and tested non-infected.
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