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24 protocols using anti creb

1

Western Blot Analysis of Hippocampal Proteins

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After the behavioral experiment, the mouse brain was quickly removed, and hippocampal tissues (six per group) were placed in ice-cold saline. The tissues were homogenized with RIPA buffer and protease inhibitors for 10 min and then centrifuged at 12,000 rpm for 30 min at 4 °C. The supernatants of the samples were assayed for protein content, diluted with 1:4 sample buffer and heated at 95 °C for 5 min. The proteins were loaded onto 10% sodium dodecyl sulfate (SDS) polyacrylamide gels and then transferred onto PVDF membranes. The membranes were incubated with blocking buffer (5% nonfat milk and 0.1% Tween-20 in Tris-buffered saline [TBST]) for 1 h at 27 °C. The membranes were incubated with the following primary antibodies overnight at 4 °C: anti-GluA1 and anti-GluA3 (Abcam 1:2000), anti-GluA2 (Millipore 1:2000), anti-NR1 (Sigma 1:1000), anti-NR2A and anti-NR2B (Abcam 1:2000), anti-ERK (Abcam 1:1000), anti-CREB (Abcam 1:1000), and anti-PSD95 (CST 1:1000). After three washes with TBST, the membranes were incubated with IRDye 700DW- or 800DW-conjugated anti-mouse or anti-rabbit IgG (1:10,000) for 1 h at room temperature, washed with PBS, and scanned to detect fluorescence with the LI-COR Odyssey detection system.
The investigators were blinded to the group assignment of the animals in all of the aforementioned experiments.
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2

Hippocampal Protein Expression Analysis

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The hippocampi of rats were rapidly collected and stored in liquid nitrogen immediately. The protein concentration was tested using a Pierce bicinchoninic acid (BCA) protein assay kit (Thermo scientific). Samples containing 40 μg of total protein were separated in 10%–15% sodium dodecyl sulfate (SDS)‐polyacrylamide gels and then transferred to polyvinylidene difluoride (PVDF) membranes (0.22 μm; Millipore Corp). The membranes were blocked in TBST containing 5% nonfat dry milk for 90 min and incubated with the following primary antibodies overnight at 4°C: anti‐PSD95 (goat monoclonal antibody; Abcam, 1:2,000), anti‐SYP (rabbit monoclonal antibody; Abcam, 1:2,000), anti‐GAP43 (rabbit monoclonal antibody; Abcam, 1:2,000), anti‐BDNF (rabbit monoclonal antibody; Abcam, 1:2,000), anti‐p‐CREB (phosphor S133, rabbit monoclonal antibody; Abcam, 1:5,000), anti‐CREB (rabbit monoclonal antibody; Abcam, 1:2,000), and anti‐β‐actin antibody (1:500, mouse monoclonal antibody; Boster, 1:500). On the next day, the membranes were incubated with the corresponding secondary antibody (anti‐goat/rabbit/mouse IgG; ZSGB‐BIO, 1:5,000) for 90 min at room temperature. After using clarity western electrochemiluminescence (ECL) substrate (Bio‐Rad), protein bands were visualized in the Bio‐Rad Imager. The intensities of the protein bands were analyzed by densitometry using Syngene imaging systems.
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3

Immunohistochemical Analysis of Neuronal Markers

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Mice were sacrificed by cervical dislocation. Their brains were removed and fixed in 4% paraformaldehyde (PFA) overnight. After dehydration, the tissue was embedded in paraffin and coronally sectioned (7 µm) on a rotary microtome (Leica, RM45). Select sections from the corresponding region of the locus ceruleus (LC), dorsal raphe nuclei (DR), hippocampus, or frontal cortex in mutant and control mice were incubated overnight at 4 °C with primary anti-CREB (1:100, Abcam, United Kingdom, cat no. ab32515), anti-NeuN (1:100, Millipore, USA, cat. no. MAB377), anti-Tph2 (1:100, Millipore, USA, cat. no. AB1541) and anti-TH (1:500, Millipore, USA, cat. no. AB1542) antibodies. Antigen-bound primary antibodies were visualized with anti-rabbit Alexa-488, anti-sheep Alexa-594, and anti-mouse Alexa-594 (Invitrogen, USA) coupled secondary antibodies. Stained sections were analyzed and acquired under a fluorescence microscope (Nikon Eclipse50i, Japan) equipped with a camera and specialized software (NIS Elements, ver. BR 3.0).
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4

ChIP-qPCR Analysis of SATB1 and CREB Binding

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MGE cells were treated with activin A (100 ng/ml) for 60 min, collected by trypsinization, and washed twice in ice-cold PBS. Cells of 3 wells from 12-well plates were pooled together (∼450,000 cells in total). DNA–protein complexes were cross-linked by incubating the cells with 37% formaldehyde (final concentration 1%) for 8 min. DNA was then purified and immunoprecipitated using a HighCell ChIP Kit (Diagenode) according to the manufacturer’s protocol. DNA was sheared by sonication using a Sonicator (Diagenode): 10 cycles (30 s on, 30 s off) at high power setting. DNA was immunoprecipitated using an anti-SATB1 antibody (Santa Cruz, X-5889, 6.3 µg/sample), or anti-CREB (Abcam, 31387, 6.3 µg/sample) or mouse-IgG (provided with the kit). Immunoprecipitates were amplified and analyzed by real-time quantitative PCR (qPCR) using SybrGreen reagents (Applied Biosystems). The following qPCR primers were used: SST-promoter-R1: Fw: 5′-CCT​GTA​GGG​ATC​ATC​TCG​TCC-3′, Rv: 5′-GGC​CAG​AGT​TCT​GAC​TGC​TTT3′; SST-promoter-R2: Fw 5′-ACT​CTG​GCC​TGA​ACA​GTA​AAC​AT3′, Rv: 5′-TCA​GCT​CTG​CCT​GAT​CTC​CTA3′; and IL2a-promoter: Fw 5′-GGG​GGT​GGG​GAT​ACA​AAG​TAA3′, Rv: 5′-TCT​TGC​TCT​TGT​CCA​CCA​CAA​TA3′.
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5

Antibodies and Inhibitors for JEV Research

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Primary antibodies to FLAG, GAPDH, CDK1, p-CDK1 (Thr-15), and p-CREB (Ser-133) were purchased from Abclonal Technology. Other antibodies used include anti-MAVS (Proteintech Technology), anti-CREB (Abcam), anti-c-Rel and anti-p-IκBα (S32/35) (Cell Signaling Technology), and anti-mouse/rabbit secondary antibodies labeled with horseradish peroxidase (Boster). The monoclonal antibodies against JEV NS5, NS1 (bind to both NS1 and NS1′), and NS1′ (specifically bind to NS1′) were generated in our laboratory (26 (link)). Poly(I·C) was obtained from Sigma. CDK1 inhibitor RO3306 was purchased from Selleck.
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6

Hippocampal Protein Isolation and Western Blot Analysis

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Protein isolation from hippocampal tissues was performed as previously (Zhou et al., 2010 (link)) described for either total cell isolates or cytosolic subcellular fractionated samples. Protein fraction was collected and homogenized on ice in RIPA buffer with protein concentration assessed and normalized with a Bradford protein assay kit (Beyotime, Shanghai, China). The following primary antibodies were used: anti-CHOP (1:200, Abcam), anti-CREB (1:200, Abcam), anti-Bim (1:200, Abcam), and anti-Cytochrome C (1:300, Abcam), anti-cleaved-caspase-3 (1:500, Cell Signaling Technology). Primary antibody detection was performed using secondary antibodies conjugated to horseradish peroxidase (Jackson Immuno Research). GAPDH expression in the same membrane was simultaneously determined as an internal reference. Western blots were imaged with a luminescent analyzer (GE Healthcare Bio-Sciences AB, Uppsala, Sweden) and quantification performed using Image Quant TL (GE Healthcare Bio-Sciences AB, Uppsala, Sweden).
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7

Western Blot Analysis of Neural Factors

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The proteins of primarily cultured NSCs or spinal cord tissues from SCI rats were isolated by RIPA lysis buffer (Beyotime, Shanghai, China), and the concentrations were determined by a BCA detection kit (Beyotime). About 20ug proteins were loaded and electrophoresed onto 12% SDS polyacrylamide gel (GE Healthcare Bioscience, Marlborough, MA, United States) and then transferred to polyvinylidene fluoride (PVDF) membrane (MilliporeSigma, Burlington, MA, United States). The membranes were blocked by 5% non-fat milk for 60 mins at 37°C and were then incubated with anti-NGF monoclonal antibody (1:1000, Abcam, Cambridge, MA, United States), anti-CREB (1:1000, Abcam), anti-GDNF (1:500, Abclonal, Wuhan, China), anti-BDNF (1:1000, Abcam), anti-VEGF (1:1000, Boster, Pleasanton, CA, United States) and anti-β-actin (1:5000, Boster) overnight at 4°C. The primary antibody incubation was followed by incubation with a secondary peroxidase-conjugated anti-rabbit (1:5000, Boster) or anti-mouse antibody (1:5000, Boster) at room temperature for 2 h. The detection of signal was conducted using Bryo ECL kit (Bytotime), and the measurement of proteins’ expression was done by Image J (Joonas “Regalis” Rikkonen, Version 1.8.0).
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8

ChIP-qPCR Analysis of CREB Binding

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A total of 1×106 HepG2 cells were used for each ChIP assay. The chromatin isolation and ChIP assays were performed using an EZ-Zyme Chromatin prep kit and an EZ-ChIP kit (Millipore). The chromatin solution was immunoprecipitated with either 5 μg anti-CREB (Abcam) or 5 μg normal anti-immunoglobulin (Ig)G antibody and 20 μl protein A agarose beads (Cell Signaling Technology, Inc., Danvers, MA, USA) overnight at 4°C. Following sequential washes, once with each of the following buffers (Buffer A, low salt wash buffer; Buffer B, high salt wash buffer; Buffer C, LiCl wash buffer and Buffer D, Tris-HCl EDTA buffer), the antibody-protein-DNA complex was eluted from the beads. Following reverse cross-link incubation, which comprised the addition of 20 μl 5 M NaCl per tube (NaCl final concentration, 0.2 M). The tubes were agitated continuously and incubated at 65°C overnight to induce cross-linking. Subsequently, the protein and RNA were removed by proteinase K and RNase and a qPCR assay was performed on the immunoprecipitated genomic DNA with primers specific for the CREB binding site upstream of the transcriptional start site. The primers used were as follows: Forward, 5′-AGGACCGGAGGACAAGGTTC-3′ and reverse, 5′-CTTCCGTTCTCCGTCGTCTC-3′.
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9

Protein Expression Analysis by SDS-PAGE and Western Blotting

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SDS–PAGE (10% and 4% gels) and Western blotting analysis were used in the present study. The immunoreactive bands were visualized by ECL solution, and the images were quantified by a UVP gel imager. The primary antibodies used were as follows: anti-Erk1 (pT202/pY204) + Erk2 (pT185/pY187) (Abcam, USA, mouse, 1/100,00), anti-CREB (phospho S133) (Abcam, USA, rabbit, 1/5,000); anti-CREB (Abcam, USA, rabbit, 1/500), anti-BDNF (Abcam, USA, mouse, 0.2–2 μg/mL); anti-β catenin (Abcam, USA, rabbit, 1/5,000), anti-GSK3β (Abcam, USA, mouse, 1/500); anti-GSK3β (phospho Y216) (Abcam, USA, rabbit, 1/500), and anti-PKA (Abcam, USA, rabbit, 1/500).
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10

Quantifying Neuronal Protein Changes

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The mice were sacrificed under isoflurane anesthesia on day 20 after incision and/or alcohol treatment and the ipsilateral L4-L6 lumbar spinal cord tissues were harvested. Proteins from the lumbar spinal cord tissues were extracted as described previously.20 (link),24 (link) Nuclear fraction of the extracted protein was used for detecting CREB and its phosphorylation.24 (link) β-actin and histone H3 were used as loading controls for N-cadherin and CREB, respectively. Protein concentration was determined using the bicinchoninic acid method. The following affinity-purified antibodies were used: anti-N-cadherin (1:1000, Cat. # ab76057, Abcam, USA), anti-CREB (1:1000, Cat. # ab32515, Abcam, USA), anti-phospho-CREB-Ser133 (1:5000, Cat. # ab32096, Abcam, USA), anti-β-actin (1:200000, Cat. # A5316, Sigma, USA), and anti-histone H3 (1:3000, Cat. # 17168-1-AP, Proteintech, USA). The intensities of bands were quantified with densitometry using Image J software (NIH, USA). The intensity values of N-cadherin bands were normalized with β-actin and expressed as a ratio of N-cadherin/β-actin, and the intensity values of the phospho-CREB-Ser133 (p-CREB) were normalized with total CREB and expressed as a ratio of p-CREB/CREB. The specificity of anti-N-cadherin, anti-CREB anti-phospho-CREB-Ser133 antibodies has been validated previously.25 (link)–27 (link)
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