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8 protocols using chi3l1

1

Protein Expression Analysis in Infarcted Heart

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50 mg of heart tissues removed from the border zones of infarct area were cut and homogenized in RIPA buffer (Cat# P0013B, Beyotime Biotechnology, Shanghai, China) added with protease inhibitor cocktail (Cat# 78430, Thermo Scientific, Waltham, MA, USA), and centrifuged at 12,000 rpm for 30 min at 4 °C. The supernatant was collected and the protein concentration was quantified using a BCA protein assay (Cat# P0012, Beyotime Biotechnology, Shanghai, China). For western blotting experiments, protein samples were first separated with SurePAGE gels (Cat# M00656, GenScript, Nanjing, China) and transferred to a nitrocellulose membrane (Millipore, Burlington, MA, USA), which was incubated with one of the following primary antibodies in the indicated concentrations: CHI3L1 (1:500, #ab77528, Abcam, Cambridge, MA, USA), PAR2 (1:500; #YN2681, Immunoway Biotechnology, Plano, TX, USA), PI3K (1:1000, #4249, Cell Signaling Technology, Danvers, MA, USA), p-PI3K (1:500; #17366, Cell Signaling Technology, Danvers, MA, USA), ERK (1:1000, #4695, Cell Signaling Technology, Danvers, MA, USA), pERK (1:500, #4370, Cell Signaling Technology, Danvers, MA, USA), eNOS (1:800; #ab16798, Abcam, Cambridge, MA, USA), and GAPDH (1:3000, #TDY042, TDY biotech, Beijing, China).
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2

Western Blot Protein Analysis

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The Western blot analysis was performed using standard protocols with antibodies against CHI3L1 (1:1000; Abcam, UK), MMP13 (1:1000; R&D systems, USA), SPP1 (1:500; Abcam, UK) and α-tubulin (1:3000, Abcam, UK).
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3

Western Blot Analysis of Protein Expression

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After OSM and STAT3 inhibitor treatment, the total proteins were extracted by RIPA buffer (Pierce, Rockford, IL) on ice. Equal quantities of protein samples were separated by electrophoresis on 12% SDS-PAGE polyacrylamide gels. Then, the samples were electro-transferred to PVDF membranes (0.22 μm, Millipore) using a wet transfer apparatus (Bio‐Rad) and blocked with 5% BSA in PBS for 1 h at room temperature. The membranes were incubated overnight at 4 °C with primary antibodies of CD44, FN1, CHI3L1, CD24, DLL3, OLIG2 and β-ACTIN (Abcam), respectively. After that, the blots were incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies (#HA1001, huabio, 1:5000) at room temperature for 1 h [30 (link)]. The immobilon reagents (Millipore) was used for the visualization and detection of antibody-antigen complexes. The band intensity was measured by ImageJ software.
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4

Protein Expression Analysis in Cells

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Harvested cells were lysed with heat denaturation in RIPA cell lysis buffer. Protein lysates (20 μg) were run on SDS-PAGE, and proteins were transferred to polyvinylidene difluoride (PVDF) membrane. Blots were incubated primary antibodies against TAGLN2 (Santa Cruz); N-cadherin, E-cadherin, β-catenin, Snail, Slug, Twist, p21, p27, CDK2, Survivin, c-Myc, Cyclin D1, CD44, GAPDH (Cell Signaling Technology; Danvers, MA, USA); and FoxM1, Cyclin B1, Smad, p-Smad, CHI3L1 (Abcam; Cambridge, UK). Specific proteins were detected with enhanced chemiluminescence (ECL, Millipore, Bredford, USA). Band density was measured (ImageJ software) and normalized to GAPDH.
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5

Immunohistochemical Analysis of Inflammatory Markers

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Frozen sections were fixed in a 1:1 mixture of methanol/acetone for 10 min at room temperature (RT) and then blocked (1 h at RT) using 10% (v/v) donkey serum in phosphate-buffered saline (PBS). Immunohistochemical staining was carried out using the following antibodies: Chi3l1 (1:100; Abcam, Cambridge, UK), VCAM (1:50; BD Pharmingen, Franklin Lakes, NJ, USA), ICAM1 (1:100; Santa Cruz Biotechnology, Dallas, TX, USA), PCNA (1:150; Cell Signaling, Danvers, MA, USA), and MOMA2 (1:150, Abcam) overnight at 4ºC. The sections were subject to incubation with biotinylated secondary antibodies (1:500, Santa Cruz Biotechnology) for 2 h at RT. After washing in PBS, the immunocomplex was visualized using DAB solution (Vector Laboratories, Burlingame, CA, USA) containing 0.08% (v/v) hydrogen peroxide in distilled water, following manufacturer protocol. Sections were dehydrated in a series of graded alcohols, cleared in xylene, and coverslipped using Cytoseal XYL mounting media (Richard-Allan Scientific, Kalamazoo, MI, USA). Micrographs were taken with a light microscope (Zeiss Axio Imager A2) at 10× or 40× magnification.
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6

Western Blot Analysis of Protein Expression

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RIPA (Invitrogen, California, USA) was used to extract the total proteins from cells, and the BCA assay kit (Invitrogen, California, USA) was used to determine the concentration of protein. 25 μg of the total proteins was loaded into the wells of SDS-PAGE along with the molecular weight markers. After running gel for 1 hour, the proteins were transferred onto PVDF membranes, and then the membrane was blocked with 5% skimmed milk or BSA in 1× TBST buffer. Respective primary and secondary antibodies were used to detect the expression of target proteins. Antibodies used in western blot include CHI3L1, GAPDH (Abcam, Shanghai, China), SMAD2, phosphor-SMAD2, SMAD3, phosphor-SMAD3 (Cell signaling, Shanghai, China).
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7

Immunohistochemistry Protein Detection

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Immunohistochemistry was performed using standard protocols with antibodies against CHI3L1 (1:50; Abcam, UK), MMP13 (1:100; R&D systems, USA), and SPP1 (1:100; Abcam, UK). Further details are provided in the supplementary material.
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8

Protein Extraction and Western Blot Analysis

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Total protein was extracted from tissues and cells using RIPA buffer (Invitrogen, California, USA). The protein concentration was determined using the BCA protein assay kit (Invitrogen, California, USA). An equal amount (25 μg) of total protein per well was loaded into the wells of SDS-PAGE, and after 1.5 h of electrophoresis, constant-pressure electrotransfer was performed to transfer the proteins to PVDF membranes, then we blocked it in Tris-buffered saline (TBS) containing 0.1% Tween-20 (TBST) with 5% skimmed milk at room temperature for 1 h. Antibodies used in western blot analysis included CHI3L1, GAPDH (Abcam, Shanghai, China), cyclinD1, cyclinD2, bax, cleaved caspase3, cleaved PARP, p53, survivin, and Bcl2 (Cell signaling, Shanghai, China).
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