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16 protocols using anti cleaved poly adp ribose polymerase parp

1

Antibody-based Protein Analysis Protocol

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Antibodies used in this study included: anti-PUMA (Cell Signaling Technology); anti-cleaved poly ADP-ribose polymerase (PARP; Cell Signaling Technology); anti–β-actin (Sigma); anti-ATM (Abcam); anti-p-Ser1981-ATM (Abcam); anti-cleaved Caspase 7 (Stressgen Bioreagents Corp.); anti-p-Ser15-p53 (Cell Signaling Technology); anti-p53 (Oncogene Research); anti-Cdk2 (Santa Cruz Biotechnology); anti-Ku86 (Santa Cruz Biotechnology); anti-Tubulin (Santa Cruz Biotechnology); and anti-Flag (Sigma). 5-FU and MTX were purchased from Sigma. 2-14C-5-FU was purchased from Moravek Biochemicals. Cks expressing adenoviruses were described previously (13 (link)).
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2

Whole Cell Lysate Preparation and Immunoblotting

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Whole cell lysates were prepared in RIPA lysis buffer supplemented with protease inhibitor cocktail (Complete Mini; Roche, Basel, Switzerland). The lysates were sonicated for 5 minutes, centrifuged at 12 000 × g for 20 minutes at 4°C, and the supernatants were collected. Immunoblotting was carried out as previously described.29 The following primary antibodies were used at the indicated dilutions: anti‐β‐actin (1:10 000, A5441; Sigma‐Aldrich), anti‐p21 (1:1000, Sc‐397; Santa Cruz Biotechnology, Dallas, TX, USA), anti‐cleaved poly ADP‐ribose polymerase (PARP, 1:1000, #9541; Cell Signaling Technology, Danvers, MA, USA), anti‐IDH1 (1:200, 014‐24061; Wako), and anti‐IDH1‐R132S (1:200, 015‐24091; Wako).
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3

Antibody-based Protein Analysis Protocol

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Antibodies used in this study included: anti-PUMA (Cell Signaling Technology); anti-cleaved poly ADP-ribose polymerase (PARP; Cell Signaling Technology); anti–β-actin (Sigma); anti-ATM (Abcam); anti-p-Ser1981-ATM (Abcam); anti-cleaved Caspase 7 (Stressgen Bioreagents Corp.); anti-p-Ser15-p53 (Cell Signaling Technology); anti-p53 (Oncogene Research); anti-Cdk2 (Santa Cruz Biotechnology); anti-Ku86 (Santa Cruz Biotechnology); anti-Tubulin (Santa Cruz Biotechnology); and anti-Flag (Sigma). 5-FU and MTX were purchased from Sigma. 2-14C-5-FU was purchased from Moravek Biochemicals. Cks expressing adenoviruses were described previously (13 (link)).
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4

Immunoblotting for SerpinB2 and uPA

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Immunoblotting was performed as described 12 (link) using anti-human SerpinB2 mouse monoclonal antibody (American Diagnostica, Lexington, MA; #3750), an anti-mouse SerpinB2 antibody generated in-house 12 (link) (currently available commercial anti-SerpinB2 antibodies do not recognize murine SerpinB2, data not shown), anti-cleaved Poly (ADP-ribose) polymerase (PARP) (Cell Signaling Technology, Danvers, MA; Asp214), rabbit anti-mouse uPA (Abcam, Waterloo, NSW, Australia; ab20789, 1:5000), rabbit anti-actin (Sigma Aldrich, #AC40), and anti-GAPDH (Millipore, Billerica, MA; MAB 374). Detection was performed by HRP-conjugated sheep anti-mouse (Chemicon, Temecula, CA; #AP326P) and Western Lightning enhanced chemiluminescence substrate (Perkin Elmer, Waltham, MA; #NEL101001EA).
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5

Western Blot Analysis of Apoptosis

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The HEL 92.1.7 and SET-2 cells (1 × 106) treated with CR-LAAO (0.03–0.15 μg/mL and 1.5–3.0 μg/mL, respectively) were suspended in 200 μL of the Western blotting sample buffer supplemented with 5% mercaptoethanol, 4% sodium dodecyl sulfate (SDS), 20% glycerol, and 100 mM Tris–HCl at pH 6.0. The samples were analyzed by electrophoresis and transferred onto polyvinylidene fluoride (PVDF) membranes.
The membrane was sequentially labeled overnight with anti-caspase-3 polyclonal rabbit antibody (code 9662, Cell Signaling Technology), anti-tubulin (code T3320, Sigma–Aldrich), anti-caspase-9 polyclonal rabbit antibody (code 9502, Cell Signaling Technology), anti-caspase-8 mouse monoclonal antibody (code 9746, Cell Signaling Technology), and anti-cleaved Poly(ADP-ribose) polymerase (PARP – code 9541, Cell Signaling Technology). The antibodies had been diluted in a blocking solution containing 5% skim milk and 0.01% sodium azide, according to the manufacturers’ instructions.
After labeling with each primary antibody, the membrane was incubated with the peroxidase-labeled anti-mouse or anti-rabbit secondary antibody for 1 h at room temperature. The labeled proteins were detected by chemiluminescence (Amersham ECL Plus, GE Healthcare Life Science, Pittsburgh, BREAK). Then, the membrane was washed with the stripping buffer before being relabeled with the next primary antibody.
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6

Immunohistochemical Analysis of TNBC Xenografts

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TNBC cell xenograft tumor tissues were fixed in 10% neutral-buffered formalin and embedded in paraffin. The sections (5 μm thick) were deparaffinized in xylene for 2 min 3 times, rehydrated in graded alcohols for 1 min, and washed in distilled water. IHC staining was performed using the Lab Vision automated system (Thermo Fisher) through the MD Anderson Cancer Center Division of Surgery Histology Core. The slides were then incubated with anti-Ki-67 (#RM-9106, 1:100, Thermo Fisher), anti-pHER2 (#2243, 1:320, Cell Signaling), anti-HER2 (#APA342AA, Biocare Medical, Pacheco, CA, USA), anti-EGFR (#4267, 1:50, Cell Signaling), anti-pEGFR (#API300AA, Biocare Medical), anti-Bim (#2933, 1:200, Cell Signaling), and anti-cleaved poly(ADP-ribose) polymerase (PARP, #5625, 1:100, Cell Signaling). Immunostained slides were scanned using an Aperio AT2 slide scanner (Leica, Buffalo Grove, IL, USA) and captured at 20× magnification using ImageScope software (Leica Biosystems, Wetzlar, Germany). Then intensity was quantified by ImageJ software [19 (link)].
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7

Cordycepin Potentiates Cisplatin-Induced Apoptosis

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Cordycepin purified from Cordyceps militaris was purchased from Sigma, and cisplatin was purchased from ILDONG Pharmaceutical (Korea). Anti-Bcl-2, anti-Bax, anti-Bak, anti-MDR1, anti-Mcl-1, anti-caspase-3, anti-caspase-9, anti-cleaved poly-ADP-ribose polymerase (PARP), anti-phospho-AKT (Thr308), and anti-AKT antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-α-tubulin, anti-Bcl-xL, and anti-Ets-1 (C-4) antibodies were purchased from Santa Cruz Biotechnology (Dallas, TX, USA). Anti-pEts-1 (T38) antibody was purchased from Invitrogen (Carlsbad, CA, USA). Horseradish peroxidase-conjugated goat anti-mouse IgG, goat anti-rabbit-IgG, 3-(4,5-Dimethyl-2-thiazolyl)-2,5-diphenyl-2H-tetrazolium bromide (MTT), propidium iodide (PI), Cordycepin, and 4′, 6-diamidino-2-phenylindole (DAPI) were purchased from Sigma-Aldrich.
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8

Western Blot Analysis of Apoptosis Markers

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Total protein was extracted from the fibroblasts when they reached 60–80% confluence and protein concentrations were measured using a Bicinchoninic Protein Assay kit (Thermo Fisher Scientific, Inc.). A total of 10 µg protein was separated by 10% SDS-PAGE and transferred onto polyvinylidene fluoride membranes. Following the blocking of non-specific binding with 5% non-fat milk dissolved in TBS + 0.05% Tween-20 at room temperature for 2 h, the membranes were incubated with the following antibodies: Anti-cleaved poly [ADP-ribose] polymerase [PARP; 1:1,000; catalog no. 5625; Cell Signaling Technology, Inc. (CST), Danvers, MA, USA], anti-GAPDH (1:1,000; catalog no. 8884; CST), anti-B cell lymphoma 2 (Bcl-2; 1:1,000; catalog no. 4223; CST), anti-Bax (1:1,000; catalog no. 5023; CST) and anti-mothers against decapentaplegic homolog 3 (Smad3; 1:1,000; catalog no. ab40854; Abcam, Cambridge, UK) at 4°C overnight. Following washing with TBST, the membranes were incubated with horseradish peroxidase (HRP)-conjugated anti-rabbit secondary antibodies (1:1,000; catalog no. 7074; CST) and the protein expressions were visualized using the Enhanced Chemiluminescence System (EMD Millipore, Billerica, MA, USA). The bands were quantified by densitometry using Image J 1.46r software (National Institutes of Health, Bethesda, MD, USA). All reactions were performed in triplicate.
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9

Immunoblotting Analysis of Apoptosis and Signaling

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Forty micrograms of cellular proteins resolved by SDS–PAGE were immunoblotted as previously described (Ying et al. 2012 (link)). The primary antibodies (Cell Signalling Technology) were: anti-cleaved caspase-3 (1:1000), anti-cleaved poly (ADP-ribose) polymerase (PARP, 1:1000), anti-non-phosphorylated b-catenin (Ser33/37/Thr41, 1:1000), anti-phosphorylated b-catenin (Ser33/37/Thr41, 1:1000), anti-phosphorylated Akt (Ser473, 1:1000), anti-phosphorylated GSK3b (Ser9, 1:1000), anti-BCL2 (1:1000) and anti-GAPDH (1:1000). Anti-survivin (1:500) and anti-phosphorylated b-catenin (Ser552, 1:500) were from ABclonal (Boston, MA, USA). Anti-CD36 (1:1000) was from Abcam. HRP-conjugated secondary antibodies (1:2000) were from Cell Signalling Technology. Immunoreactive bands were revealed by ECL and visualized by the KODAK Image Station 4000MM PRO. Band intensities were quantified by scanning densitometry (Gel-Doc2000, Bio-Rad) and analyzed with Quantity On (Bio-Rad).
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10

Immunoblot Analysis of Cell Signaling

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Immunoblot analyses were carried out as previously described.
18 (link) The membranes were incubated with antibodies against anti‐DYRK2 (Sigma‐Aldrich), anti‐p53 (Santa Cruz Biotechnology), anti‐phospho‐p53‐Ser46 (Bio Academia and Cell Signaling Technology), anti‐cleaved poly (ADP‐ribose) polymerase (PARP) (Cell Signaling Technology), anti‐cleaved caspase‐3 (Cell Signaling Technology) and anti‐glyceraldehyde‐3‐phosphate dehydrogenase (GAPDH) (Santa Cruz Biotechnology). Then membranes were incubated with peroxidase‐conjugated anti‐rabbit IgG (Cell Signaling Technology) or anti‐mouse IgG (Cell Signaling Technology). The dilution ratios were all 1:1000.
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