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7 protocols using glc 1 p

1

Enzymatic Amylose Synthesis with Thermostable Phosphorylase

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(Tokyo Chemical Industry Co., Ltd., Tokyo, Japan) in a solution of sodium methoxide with methanol. Thermostable α-glucan phosphorylase from Aquifex aeolicus VF5 was supplied from Ezaki Glico Co., Ltd. (Osaka, Japan) [20, (link)34, (link)35 (link)]. An amylose sample was prepared by the thermostable α-glucan phosphorylase-catalyzed enzymatic polymerization of Glc-1-P. All other commercial available reagents and solvents-i.e., Glc-1-P (disodium salt, Sigma-Aldrich, St. Louis, MO, USA), Glc 3 (Hayashibara CO., LTD., Okayama, Japan), Tris-acetate buffer (Nacalai Tesque, Inc., Kyoto, Japan), KH 2 PO 4 (FUJIFILM Wako Pure Chemical Co., Osaka, Japan), and dimethyl sulfoxide (DMSO, FUJIFILM Wako Pure Chemical Co., Osaka, Japan)-were used as received.
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2

Enzymatic Assays for Carbohydrate Metabolism

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Glc-1P, Gal-1P, GlcN-1P, ATP, ITP, UTP, CTP, GTP, ADP-Glc, UDP-Glc, GDP-Glc, inorganic pyrophosphate (PPi) and Fru-1,6-bisP were obtained from Sigma-Aldrich (St. Louis, MO, USA). All other reagents were of the highest quality available.
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3

Sourcing and Characterization of Sugar-1-Phosphates

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All sugar-1-phosphates, except D-Glc-1-P, fructose-phosphates and α-D-glucosamine-1-P [GlcN-1-P], were kindly provided by Dr. Motomitsu Kitaoka, from Laboratory of Enzyme Research, NARO, Ibaraki, Japan. Separate batches of Gal-1-P were also purchased from Sigma–Aldrich (Stockholm, Sweden) and from Carbosynth (Compton, United Kingdom). Glc-1-P, glucosamine-1-P (GlcN-1-P) as well as β-D-fructofuranosyl-1-P (β-D-Fruf-1-P), β-D-fructofuranosyl-2-P (β-D-Fruf-2-P) and other fructose-phosphates were from Sigma–Aldrich. Compound #41 (ZINC720558), an inhibitor of Trypanosoma brucei UAGPase2 (Urbaniak et al., 2013 (link)), was purchased from MolPort (Riga, Latvia), whereas cmp #6D (CID 6526371) was from (ChemBridge Inc., San Diego, CA, United States).
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4

Biochemical Reagents for Research

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ATP, Fru6P, 3PGA, and Glc1P were from Sigma Aldrich (St. Louis, MO, USA). All other reagents were of the highest quality available.
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5

Fungus Cultivation and Spore Quantification

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Glc-1P, Glc-6P dehydrogenase, and Leuconostoc mesenteroides (LmG6PDH) were obtained from Sigma-Aldrich. Isothiazolone derivatives (ISFP1, ISFP2, ISFP3, ISFP4) were purchased from Maybridge and ISFP7 from Sigma-Aldrich. The parental strain of A. fumigatus KU80 ΔpyrG- was cultivated at 37 °C on solid CM supplemented with 5 mM uridine and 5 mM uracil. Spore concentration was calculated using a hemocytometer.
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6

Preparation of Biochemical Reagents

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Protein standards, antibiotics, IPTG, Glc-1P, Glc-6P, glucosamine-1P (GlcN-1P), galactose-1P (Gal-1P), N-acetylglucosamine-1P (GlcNAc-1P), 6-phosphogluconate (6-PGlcA), ATP, UTP, GTP, CTP, fructose-6P (Fru-6P), ribose-5P (Rib-5P), phosphoenolpyruvate (PEP), pyruvate (Pyr), NADPH, and oligonucleotides were obtained from Sigma-Aldrich (St. Louis, MO, USA). All other reagents were of the highest quality available.
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7

Enzymatic Phosphate Compound Acquisition

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Glc-1-P, Glc-6-P, glucose-1,6-bisphosphate (Glc-1,6-2P) and GlcN-6-P were purchased from Sigma-Aldrich. GlcNAc-6-P, GlcNAc-1-P and GlcN-1-P were purchased from Santa Cruz Biotechnology. Double distilled water was used for HPLC, and all other solvents and chemicals were HPLC grade.
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