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7 protocols using biort cdna first stand synthesis kit

1

Gene Expression and Western Blot Analysis

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Total RNA from Con (n = 5) samples was isolated with TRNzol-A+ reagent (TIANGEN, Beijing, China) according to the manufacturer’s instructions. cDNA was synthesized with DNAse I (Fermentas) treated total RNA using the BioRT cDNA First Stand Synthesis Kit (Bioer Technology, Hangzhou, China). Primers used for RT-PCR are listed in Table S1. Q-PCR was performed using the BioEasy SYBR Green I Real Time PCR Kit (Bioer Technology, Hangzhou, China) with the BIO-RAD Iq5 Multicolor Real-Time PCR Detection System. The relative gene expression normalized to the GAPDH was determined by 2−ΔΔCT formula. All the data of gene expression were performed three times.
For Western blotting, the eyes tissues from BR, WR and 3′ UTR KO rabbits were homogenized in 150 lL of lysis buffer. The protein concentrations were measured by the Braford method (Bio- Rad). In this study anti-TYR polyclonal antibody (1:2000; abcam) and anti-GAPDH monoclonal antibody (1:2000; Beyotime) were used as primary and internal control respectively. Images were quantified using ImageJ software (NIH) and all data are expressed as mean ± SEM.
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2

Quantitative Real-Time PCR Analysis

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Total RNA was isolated with TRNzol-A+ reagent (Tiangen, Beijing, China) according to the manufacturer’s instructions. cDNA was synthesized with DNase I (Fermentas) treated total RNA using the BioRT cDNA first-stand synthesis kit (Bioer Technology, Hangzhou, China). Primers used for quantitative real-time PCR are listed in Table S2. Quantitative real-time PCR was performed using the BioEasy SYBR Green I real-time PCR kit (Bioer Technology, Hangzhou, China) with the Bio-Rad IQ5 multicolor real-time PCR detection system. The relative gene expression normalized to Gapdh was determined by the 2−ΔΔCT formula. All data of gene expression were performed three times and are expressed as mean ± SEM.
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3

Quantitative Analysis of Gene Expression

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Total RNAs were extracted from the prefrontal cortex, and then isolated with Trizol reagent. BioRT cDNA First Stand synthesis kit(Bioer technology, Hangzhou, China) was used to synthesize cDNA. RT-PCR was performed using LightCycler® 480 SYBR Green PCR Master Mix (Roche,USA) and analyzed using LightCycler® 480 SYBR Green SoftwareII. The expression of respective genes was normalized to that of glyceraldehyde phosphate dehydrogenase (GAPDH) within the same sample. The primers used were as follows: 5′-CGTGTCTGCACCTAGCCTCTATC-3′ and 5′- GCGAAACCAGGTCAGGATTC-3′ (IκBα), 5′-CAGGACCAGGAACAGTTCGAA-3′ and 5′-CCAGGTTCTGGAAGCTATGGAT-3′ (NF-κB-p65), 5′-TCGGTTGCATGAAGGC-3′ and 5‘- GGTTTTCTTCGTTGGGC-3′ (BDNF), 5′-GAATGATGCTGGGCAAGAGA-3′ and 5′-CAGTTGGCTTCTGGTGTTC-3' (Iba-1), 5′-TACAGGGCCTGCAGACATTAACCA-3′ 5′-ATTCTCTTGCTGCCTCCCTGTTCT-3′ (CREB), 5′-ATGTGTCCGTCGTGGATCTGA-3′ and 5′- ATGCCTGCTTCACCACCTTCT-3′ (GAPDH). RT-PCR was first identified to be specific using the melting curves and the relative expression of each mRNA level was calculated with the 2−ΔΔCT method after normalizing Ct (cycle threshold) values with GAPDH.
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4

Quantifying Inflammatory Markers in Pig PBMCs

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Blood was collected from pigs using anticoagulant EDTA tubes, and peripheral blood mononuclear cells (PBMCs) were isolated from the whole blood with Histopaque-1077(Sigma Inc., USA) according to the manufacturer’s instructions. Briefly, add 5 ml Histopaque-1077 into 50 ml tube, carefully add 5 ml blood onto Histopaque-1077, centrifuge at 400 × g for 30 min, carefully transfer the opaque interface which containing PBMCs into a new tube. Total RNA was isolated from the PBMCs (five transgenic pigs and three wild-type pigs) using the TRIzol-A+ reagent (Tiangen, Beijing, China) according to the manufacturer’s instructions. First-strand cDNAs were synthesized from 1 μg of total RNA using a BioRT cDNA first stand synthesis kit (Bioer, Hangzhou, China), and the samples were analyzed with a Bioeasy SYBR green I real-time PCR kit (Bioer, Hangzhou, China). The detection of inflammation mediators were performed using the following primers: pMCP-1 forward (TCACCAGCAGCAAGTGTCCT) and pMCP-1 reverse (ATGTGCCCAAGTCTCCGTTT); pIL-6 forward (TGGGTTCAATCAGGAGAC) and pIL-6 reverse (CTGACCAGAGGAGGGAAT); pTNF-α forward (CGCATCGCCGTCTCCTACCA) and pTNF-α reverse (TGCCCAGATTCAGCAAAGTCCA). The gene expression was normalized against the internal control (β-actin).
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5

Total RNA Isolation and qRT-PCR Analysis

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Total RNA was isolated with TRIzol-A+ reagent (TIANGEN, Beijing, China) according to the manufacturer's instructions. cDNA was synthesized with DNase I (Fermentas)-treated total RNA using the BioRT cDNA First Stand Synthesis Kit (Bioer Technology, Hangzhou, China). Quantitative real-time PCR was performed using the BioEasy SYBR Green I Real-Time PCR Kit (Bioer Technology, Hangzhou, China) with the Bio-Rad Iq5 Multicolour Real-Time PCR Detection System. Relative gene expression normalized to GAPDH expression was determined by the 2−ΔΔCT method. All gene expression data were obtained at least three times.
For western blotting, the ear tissues of pup #6 and WT rabbits were homogenized in 150 μL lysis buffer. The protein concentrations were measured by the Braford method (Bio-Rad). An anti-Lamin A/C polyclonal antibody (1:2,000; Proteintech) and an anti-β-actin monoclonal antibody (1:2,000; Proteintech) were used in this experiment.
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6

Quantitative RT-PCR Analysis of Gene Expression

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Total RNA from liver and brain (n = 5) was isolated with TRNzol-A+ reagent (TIANGEN, Beijing, China) according to manufacturer’s instructions. The cDNA was synthesized with DNAse I (Fermentas, Shanghai, China) treated total RNA via the BioRTcDNA First Stand Synthesis Kit (Bioer Technology, Hangzhou, China).
The BioEasy SYBR Green I Real Time PCR Kit (Bioer Technology, Hangzhou, China) was used to perform q-PCR, using the BIO-RAD Iq5 Multicolor Real-Time PCR Detection System. The reaction conditions were as follows: 95 °C for 3 min, followed by 40 cycles of 95 °C for 10 s for DNA denaturation, 60 °C for 15 s for primer annealing, and 72 °C for 30 s for extension. Relative gene expression normalized to β-actin was determined via the 2−ΔΔCT formula. All experiments on gene expression were performed in triplicate. The gene expression data was presented as mean ± SEM. Primers used for q-PCR and RT-PCR are listed in Table 1.

Primers for q-PCR and RT-PCR

GenePrimer sequence (5′ → 3′)Tann (°C)Length (bp)
NNAT–RTF:GCTCATCATCGGCTGGTACA60343
R:CTTGGCAAGTGCTCCTCTGA262
β-actin-RTF:ATATCGCTGCGCTGGTCGTC60517
R:AGGATGGCGTGAGGGAGAGC
NNAT-qF:GTCCCCTGTGTTCCCTCGTC6081
R:TGTCGGTGCTGCTTTTCTGG
Actin-qF:GGCACCACACYTTCTACAATG60133
R:GGGGTGTTGAAGGTCTCAAAC

Tann the annealing temperature, RT the primers for RT-PCR, Q the primers for q-PCR

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7

Lp-PLA2 Gene Expression in THP-1 Cells

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THP-1 cells (85% confluent) were pretreated with the specified drugs for 1 h prior to stimulation with 0.05 μM PMA for 12 h. Then, the cells were harvested for RNA extraction8 (link). Total RNA was isolated from cultured cells using TRIzol-A+ reagent (Tiangen Inc., China) according to the manufacturer's instructions. First-strand cDNAs were synthesized from 1 μg of total RNA using a BioRT cDNA first stand synthesis kit (Bioer Inc., China), and the samples were analyzed with a Bioeasy SYBR green I real-time PCR kit (Bioer Inc., China) with gene expression primers for Lp-PLA2 and GAPDH (a housekeeping gene). The sequences of the primers were 5′-TAATGATCGCCTTGACACCCT -3′ (forward) and 5′-TACAGCAGCAACTATAAACCC -3′ (reverse) for Lp-PLA2 and 5′-ACCACAGTCCATGCCATCAC-3′ (forward) and 5′-TCCACCACCCTGTTGCTGTA-3′ (reverse) for GAPDH.
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