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27 protocols using necrosulfonamide

1

Comprehensive Immunoblot Analysis

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The antibodies to CA9, p-RelA, RelA, p-IKKβ, IKKβ, p-IκBα, IκBα, LDH, HIF1α, SQSTM1, cleaved-caspase-3, cleaved-PARP1, NRF2, and actin were obtained from Cell Signaling Technology. The antibodies to GPX4 and CA9 were obtained from Abcam. The antibodies to LC3, MLKL, RIPK3, OPRL1, OPRM1, and HMGB1 were obtained from NOVUS. Desferrioxamine, β-mercaptoethanol, N-acetyl-l-cysteine, N-Acetyl-l-alaine, hydrogen peroxide solution, gemcitabine hydrochloride, sulfasalazine, cobalt chloride, cycloheximide, tocopherol, necrosulfonamide, hydroxychloroquine sulfate, EDTA, cytochalasin B, cytochalasin D, paclitaxel, crystal violet, protease inhibitor cocktail, Z-VAD-FMK, TNF, staurosporine, cycloheximide, and lipopolysaccharides were obtained from Sigma-Aldrich. Erastin, ferrostatin-1, lapatinib, JTC801, and compound libraries were obtained from Selleck Chemicals. BANORL24, SB612111, UFP101, and Trap101 were obtained from Tocris Bioscience.
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2

Ferroptosis Regulation Pathways Analysis

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Assay kits for the detection of cell survival (CCK8 kit) was purchased from Beyotime (Shanghai, China). GSH and MDA were obtained from MedChemExpress (Shanghai, China). Sorafenib, Ferrostatin-1 and Liproxstatin-1 were purchased from Selleck Chemicals (Shanghai, China). ZVAD-FMK, Necrostatin and Necrosulfonamide were obtained from Sigma-Aldrich (Shanghai, China). Metformin was obtained from aladdin (Shanghai, China). Antibodies against, including Nrf2, HO-1, P62, Keap1 and β-actin, were obtained from MedChemExpress (Shanghai, China). Nrf2 siRNA (GTTGCCCACATTCCCAAATCA) and P62 siRNA (GAACAGAGCGGGATCAAGAAT) were designed and constructed by QIAGEN (Shanghai, China).
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3

Multimodal Protocol for Cell Death

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Mel, SHK, N-acetyl-cysteine (NAC, ROS scavenger), 4-Bromo-Resveratrol (4-BR, SIRT inhibitor), N-Benzyloxycarbonyl-Val-Ala-Asp(O–Me) fluoromethyl ketone (Z-VAD-FMK, caspase inhibitor), 4-phenylbutyric acid (4-PBA, ER stress inhibitor), LY 294002 (PI3K inhibitor), Necrostatin-1 (Nec-1, a specific inhibitor of RIP1 kinase), necrosulfonamide (NSA, a specific inhibitor of necrosis downstream of RIP3 activation), U0126 (MEK-1/2 inhibitor), a JNK inhibitor (JNK-IN-8) and a p38 inhibitor (SB203580) were all purchased from Sigma-Aldrich (St. Louis, MO, USA) and were solubilised as recommended.
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4

Immune Signaling Pathway Modulation

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Pam3CSK4 (tlrl-pms), Poly(I:C) (tlrl-piclv), LPS (tlrl-peklps) and Flagellin (tlrl-pafla) were purchased from Invivogen. TNF-α (300–01A), IFN-γ (300–02) and IL-1α (200–01A) were purchased from Peprotech. HMGB1 (1690-HMB) was from R&D system. Rapamycin (S1039), Torin-1 (S2827), z-DEVD-FMK (S7312), z-VAD-FMK (S7023), GSK’872 (S8465) and ATP (S5260) were purchased from Selleck. Ac-YVAD-CMK (SML0429) and necrosulfonamide (480,073) were purchased from Sigma.
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5

Ferroptosis Modulation Protocol

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Erastin (a ferroptosis inducer) and Ferrostatin-1 (a ferroptosis inhibitor) were obtained from Selleck Chemicals (Houston, TX, USA). ZVAD-FMK (an apoptosis inhibitor) and necrosulfonamide (a necroptosis inhibitor) were purchased from Sigma (St. Louis, MO, USA).
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6

Apoptosis and Necroptosis Pathway Regulation

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HCT-116 were from ATCC. HCT116 (Bax/Bak)−/− cells were a gift from R. Youle (NIH, Bethesda, MD), MEF and MEF (Bax/Bak)−/− cells were a gift from S. Oakes (University of California, San Francisco, CA). Cells were authenticated and regularly mycoplam tested. TRAIL was provided by C.R. Rodrigues dos Reis (University of Groningen, Netherlands). Tunicamycin was purchased from Alexis (San Diego, CA), bortezomib from Millenium Pharmaceuticals (Cambridge, MA), MG-132 from Biomol (Plymouth Meeting, PA, USA), MnTBAP, 3-MA, 5-FU, Suc-LLVY, cisplatin, and necrostatin-1 from Calbiochem, z-VAD-fmk from Bachem (St. Helens, UK), Hoechst 33342 from Immunochemistry (UK), Aggresome Staining Kit, and TRAIL-R1:Fc (ALX-522-004-C050), TRAIL-R2:Fc (ALX-522-005-C050), and TNF-R1:Fc (ALX-522-013-C050) neutralizing antibodies from Enzo Life Sciences (Exeter, UK), Coomassie PLUS (Bradford) protein assay kit and Pierce BCA protein assay kit from Thermo Fisher Scientific, RPMI1640 medium, Q-VD-OPh, rotenone, epoxomicin, propidium iodide, ferrostatin-1, necrosulfonamide, FBS and all other chemicals were purchased from Sigma-Aldrich. Q-VD-OPh was added in concentrations of up to 20–50 µM to fully prevent caspase processing and substrate cleavage, where required [6 (link), 7 (link)].
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7

Investigating TNFα-Mediated Cell Death

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Human recombinant TNFα (R&D Systems, Cat#210-TA-005); Recombinant mouse mTNFα (Cell sciences, Cat# CRT192C); Cycloheximide (Sigma, Cat# C-6255); SM-164 (Selleckchem, custom-synthesized); Birinapant (Selleck Chemicals, Cat# S7015); zVAD (Selleck Chemicals, Cat# S8102); Nec-1s (7-Cl-O-Nec-1) (Selleck Chemicals, Cat# S8641); GSK-872 (Sigma, Cat# 5303890001); Necrosulfonamide (Sigma, 480073); LPS (Sigma, Cat# L4391); IDN-6556 (Selleck Chemicals, Cat# S7775); Poly(I:C) (InvivoGen, Cat# tlrl-pic-5); 5Z-7-Oxozeaenol (Sigma, Cat# O9890); 5-fluorouracil (Selleck Chemicals, Cat# S1209); Necrosulfonamide (Selleck Chemicals, Cat# S825); and ELISA Kit for Human TNFα (BioLegend, Cat# 430206).
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8

Establishing Erastin-Resistant Ovarian Cancer Cells

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Human ovarian cancer SKOV3 and OVCA429 cells were maintained in RPMI 1640 (SKOV3 cells) or DMEM (OVCA429 cells) medium supplemented with 10% foetal bovine serum and 1% penicillin/streptomycin at 37 °C with 5% CO2 in a humidified atmosphere. To establish erastin-resistant cells, SKOV3 cells were treated with 10 µM erastin for 7 days, OVCA429 cells were treated with 20 µM erastin for 5 days and the remaining cells were washed and cultured in fresh medium. Cell viability was analysed by using the Cell Counting Kit-8 (CCK-8) (Sigma #96992) according to the manufacturer’s instructions. Liproxstatin-1 (Lipo-1), 7-Cl-O-Nec1 (Nec-1s) and Z-VAD-FMK were obtained from Selleckchem; erastin, ferrostatin-1 (Fer-1), N-acetyl cysteine (NAC), desferrioxamine (DFO), Trolox, necrosulfonamide (NSA), sulfasalazine (SAS) RSL3 and FIN56 were purchased from Sigma. CM-H2DCFDA and C11-BODIPY (581/591) were purchased from Molecular Probes, Invitrogen.
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9

Antibody-Based Ferrostatin-1 Pathway Study

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Antibodies used in this study include anti-GAPDH (60004-1-Ig, Proteintech), anti-FSP1 (20886-1-AP, Proteintech), anti-GPX4 (ab125066, Abcam), anti-TFRC (A5865, ABclonal), anti-SLC7A11 (A2413, ABclonal), anti-TRIM54 (21074-1-AP, Proteintech), anti-ERK (#4695, Cell Signaling Technology), anti-ubiquitin (sc-9133, Santa Cruz Biotechnology), and horseradish peroxidase-conjugated secondary antibodies (VA001 and VA002, Vicmed). Reagents used in this study include Sorafenib (T0093L, Targetmol), Ferrostatin-1 (A4371, APE × BIO), Z-VAD-FMK (A1902, APE × BIO), Necrosulfonamide (B7731, APE × BIO), cycloheximide (C7698-1G, SIGMA), MG-132 (A2585, APE × BIO), and PD98059 (HY-12028, MedChemExpress).
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10

Necroptosis Signaling Pathway Characterization

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GA was purchased from Sigma Aldrich (USA) and dissolved in PRMI-1640 medium. Necrostatin-1 (Nec-1) was purchased from Sellecachem (USA). Mdivi-1 was procured from Sigma Aldrich (USA). Necrosulfonamide (NSA) was procured from Sigma Aldrich (USA). The antibodies used in the present study included anti-phospho-RIPK1 (Ser166) (Cell Signaling Technology, USA), RIPK1 (Cell Signaling Technology, USA), anti-phospho-RIPK3 (Ser227) (Abcam, USA), RIPK3 (Cell Signaling Technology, USA), anti-phospho-MLKL (Ser358) (Abcam, USA), anti-MLKL (Sigma, USA), anti-PGAM5 (Abcam, USA), anti-phospho-Drp-1 (S637) (Cell Signaling Technology, USA), anti-Drp-1 (Santa Cruz, USA), and anti-GAPDH (Santa Cruz, USA).
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