The largest database of trusted experimental protocols

3 protocols using mir 210

1

Quantitative miRNA Expression Analysis in Cells and Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
RNA isolation and qRT-PCR were described before [10, 42] . RNA was isolated using the Trizol reagent (Thermo Fisher Scientific, Waltham, MA, USA), according to the For miR-210 (ID: Hs04231470_s1, Life Technologies, Carlsbad, CA, USA), a TaqMan assay was performed according to the manufacturer's protocol. RNU44 was used as an endogenous control for miR-210 analysis (ID: 001094, Life Technologies, Carlsbad, CA, USA), All reactions were done in triplicate. For experiments with patient tissues, samples of healthy mucosa were used as calibrator. For in vitro studies, untreated cells (control group) were used as a calibrator. The following reaction steps were used for amplification: 95 °C for 10 min, 95 °C for 15 s and 60 °C for 1 min. The Ct values of endogenous controls were subtracted from the Ct values of the respective targets to calculate the ΔCt. The ΔCt values from each experimental group were averaged and converted to log base 2 using the eq. 2^-ΔΔCt to compare expression among different samples.
+ Open protocol
+ Expand
2

Validating miRNA Expression via qPCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
To confirm the results from miRNA-Seq, we selected some miRNAs of interest to measure using PCR. Total RNA was isolated from AMSCs by the mirVana PARIS total RNA isolation kit (Life Technologies, Carlsbad, CA, USA, Cat# AM1556) according to the kit protocol. RNA concentrations were measured by a NanoDrop Spectrophotometer (NanoDrop, Thermo Fisher Scientific, Inc.). A fixed volume of 5 μL of RNA elute at 1 ng/uL was reverse transcribed by using the TaqMan MicroRNA Reverse Transcription Kit (Life Technologies, Cat# 4366596). For PCR, 1.33 μL of RT product was combined with 10 μL of TaqMan Universal Master Mix (Cat# 4440038), 7.67 μL of H2O and 1 μL of primers, including miR-21, miR-146a, miR-155, and miR-210 (Life Technologies, Cat# 000397, 001097, 002623, and 000512 respectively) to make up a 20 μL reaction. RNU6B (Life Technology Cat# 001093) was included in the assay as reference control. Real-time PCR was carried out on an Applied Biosystems (Foster City, CA, USA) ViiA7 Real-Time PCR system at 50 °C for 2 min, 95 °C for 10 min and 40 cycles of 95 °C for 15 s and 60 °C for 1 min. Fold changes of miRNA levels in hypoxia relative to normoxia were calculated using the 2−ΔΔCt method.
+ Open protocol
+ Expand
3

Transfection of Meniscus and Synovial Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Isolated cells were maintained in Dulbecco’s modified Eagle’s medium with 10% fetal bovine serum (Life Technologies, Grand Island, NY, USA) and 1% antibiotic–antimycotic solution (Nacalai Tesque, Kyoto, Japan). Inner meniscus cells (5 × 104) or synovial cells (5 × 104) were seeded into the wells of 12-well plates and incubated for between 3 and 24 hours. The cells were transfected with miR-210 (20 nM) or silencer negative control RNA (20 nM; Life Technologies) using Lipofectamine RNAiMAX Transfection Reagent (Life Technologies).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!