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24 protocols using sodium thiocyanate

1

Investigating Taste Receptor Signaling in Smooth Muscle Cells

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Dextromethorphan hydrobromide, chloroquine, denatonium benzoate, quinine hydrochloride, phenylthiocarbamide (PTC), 6-n-propylthiouracil (PROP), sodium thiocyanate, salicin, nicotine, yohimbine, colchicine, thiamine, caffeine, chloramphenicol and picrotoxinin were purchased from Sigma. Fluo-4 NW calcium assay kit was purchased from Invitrogen. hPASMCs and hASMCs were either purchased from ATCC or were a kind gift from Dr. Andrew Halayko, Dept. of Physiology, University of Manitoba. Cell culture media and hPASMC growth kit were purchased from Cedarlane, Canada. Nucleofection kit for smooth muscle cell transfection was purchased from Lonza. Polyclonal antibodies specific for T2R1, T2R38 and normal IgG specific rabbit antisera were obtained from Abcam (Cambridge, MA, USA) and Santa Cruz Biotechnology (Dallas, TX, USA) respectively [6] (link), [7] (link). Phospho-MLC-Ser19 monoclonal antibody and MLC polyclonal antibody were purchased from Cell Signaling technology (Danvers, MA, USA). DyNazyme hot start was purchased from Thermo Fisher Scientific (Toronto, ON, Canada). The shRNA specific for T2R1 was purchased from Qiagen (Toronto, ON, Canada).
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2

FISH Assay for Fetal Cell Detection

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The paraffin sections on the glass slides were processed for FISH by the sodium thiocyanate (Sigma Aldrich, USA) according to the method mentioned elsewhere21 (link). For performing FISH on cells cultured from the TCV, the cells were harvested using 0.25% trypsin-EDTA and processed according to the manufacturer’s instructions (Abott Molecular Inc., USA). The dehydrated slides were air dried and FISH was carried out using CEP® X Spectrum Orange™ / Y Spectrum Green™ DNA Probe Kit (Abott Molecular Inc., USA) according to the manufactures instructions. For each TCV sections, a minimum of 500 cells with proper signals from the captured images of 30 different fields were evaluated for the enumeration of cells of maternal (XX, female) and fetal (XY, male) origin. For spheroids at each tested time points, sections from 5 different spheroids, each containing a minimum of 50 cells from the captured images of 20 different fields were evaluated.
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3

In Situ Y Chromosome Detection and Myofibroblast Identification

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In situ hybridisation for Y chromosome-specific sequences in combination with immunostaining for α-SMA was performed to detect BM-derived myofibroblasts as previously reported [11 (link)] with slight modification. Briefly, sections were cut at 4 µm and incubated in 1 M sodium thiocyanate (S7757; Sigma-Aldrich) to improve access of the probe to DNA. Following PBS washing, sections were digested in 0.4% w/v pepsin (P6887; Sigma-Aldrich) in 0.1 M hydrochloric acid to improve further access of the Y chromosome probe. The protease reaction was quenched in 0.2% w/v glycine (G4392; Sigma-Aldrich) in double concentration PBS and sections were then rinsed in PBS, postfixed in 4% w/v PFA (P6148; Sigma-Aldrich) in PBS, dehydrated through graded alcohols, and lastly air dried. A fluorescein isothiocyanate-labelled Y chromosome paint (1189-YMF-01; Cambio, Cambridge, UK) was used in the supplier's hybridisation mix. The probe mixture was added to the sections, sealed under glass with rubber cement, heated to 60°C for 10 minutes, and then incubated overnight at 37°C in a humidified chamber.
The next day, all slides were washed in 0.5x Standard Saline Citrate. The anti-FITC antibody (ab6656, Abcam) was applied in a dilution of 1 : 100 and slides further developed in DAB and counterstained lightly with haematoxylin, dehydrated and mounted in DPX-type mount.
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4

Synthesis of Azido-Containing Amino Acids

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Sodium bromide (NaBr), sodium sulfide nonahydrate (Na2S•9H2O), sodium cyanide (NaCN), sodium nitrite (NaNO2), sodium methyl thiolate (NaSCH3), sodium thiocyanate (NaSCN), sodium fluoride (NaF), L-glycine, and ammonium formate (NH4HCO2) were purchased from Sigma-Aldrich (St. Louis, MO). Sodium azide (NaN3) was purchased from EMD Chemicals, Inc. (Gibbstown, NJ). Potassium cyanate (KOCN) was purchased from Alfa Aesar (Ward Hill, MA). Sodium nitrate (NaNO3) was purchased from J. T. Baker (Phillipsburg NJ). (2S)-2-Amino-4-azido-butanoic acid (4-N3-Aba) was obtained from Toronto Research Chemicals Product List (North York, Canada). All other chemicals (except for 4-NO2-Aba, which was synthesized as summarized below) were obtained from sources previously noted.16 (link),24 (link) Purchased reagents were used as received, without purification.
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5

Synthesis and Characterization of Metallic Nanoparticles

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All DNA molecules were synthesized by MDBio, Inc. The 20-nm AuNPs and the 1-μm streptavidin-coated polystyrene beads were purchased from Nanocs and Bangs Laboratory, Inc., respectively. Polydimethylsiloxane (PDMS) (Sylgard 184) was purchased from Dow Corning. Other chemical and biochemical products, including sodium chloride (NaCl), sodium phosphate dibasic (Na2HPO4), sodium phosphate monobasic (NaH2PO4¬), sodium dodecyl sulfate (SDS), tris(2-carboxyethyl)phosphine hydrochloride (TCEP-HCl), polyvinylpyrrolidone (PVP) (MW 40,000), (+)-Sodium L-ascorbate (L-SA), silver nitrate (AgNO3), Tween 80, phosphate buffer saline (PBS), melamine, sodium thiocyanate (NaSCN) were all obtained from Sigma-Aldrich.
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6

Gelatin-Based Hydrogel Functionalization

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Gelatin (type A, 200 bloom), and coomassie blue were purchased from Fluka (Munich, Germany). Glycidyl methacrylate, OEG1000, OEG1500, OEG3400, TNBS, sodium chloride, sodium thiocyanate, sodium bicarbonate, ethanol, hydrochloric acid, diethyl ether, acetic acid, dichloromethane, methanol, THF, DMSO-D6, D2O, and SDS-PAGE sample buffer were obtained from Sigma Aldrich (Munich, Germany). Sodium carbonate, tris(hydroxymethyl)-aminomethane, glycine, SDS, ammonium sulfate, sodium sulfate, magnesium chloride, disodium-hydrogenphosphate, and sodium dihydrogenphosphate were purchased from Merck (Darmstadt, Germany). All solvents and reagents were used without further purification.
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7

Thermoresponsive Polymer Synthesis

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N-isopropylacrylamide (NIPAAm), 2,2-azobisisobutyronitrile (AIBN), 1,4-dioxane, hexane, acetone, 2-(dodecylthiocarbonothioylthio)-2-methylpropionic acid, N,N′-methylenebis(acrylamide), fluorescein O-methacrylate, fluorescein (free acid), sodium thiocyanate (NaSCN), and sodium sulfate (Na2SO4) were purchased from Sigma Aldrich (St. Louis, MO, USA). Deuterated chloroform was supplied from Cambridge Isotope Ltd., (Tewksbury, MA, USA) and N,N-dimethylformamide (DMF) was purchased from Rathburn (Walkerburn, UK).
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8

CCHFV VLP Antibody Avidity Assay

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Plates were coated with CCHFVLP. The following day, plates were washed, blocked and loaded with 1:200 dilutions of experimental sera for 1 h at ambient temperature. Plates were then washed before being exposed to concentrations of Sodium Thiocyanate (Sigma-Aldrich) ranging from 0–5.0 M. Samples were incubated for 15 m at ambient temperature before being washed. Secondary antibody incubation and development with TMB substrate was then performed as previously stated.
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9

Purification and Quantification of LPO

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LPO from bovine milk (ε412 = 112,000 M−1 cm−1 (51 )), Hank’s balanced salt solution and PBS for cell culture, Cibacron Blue 3GA agarose (type 3000-CL), 1-chloro-2,4-dinitrobenzene, sodium thiocyanate, NADH, EDTA, IAM, EC-oxyrase, calcium chloride dihydrate, spectinomycin dihydrochloride pentahydrate, Vivaspin 500 (MWCO = 3 kDa), and Amicon Ultra 0.5 centrifugal filter units (MWCO = 10 kDa) were purchased from Sigma–Aldrich (Merck). Competence stimulating peptide-1 was purchased from AnaSpec. Bovine serum albumin was from Gibco (Thermo Fisher Scientific). Auranofin was from Santa Cruz Biotechnology. H2O2 (30%) (ε240 = 43.6 M−1 cm−1 (52 (link))) was from LabServ. 2-Nitro-5-thiobenzoate (TNB) was prepared from 5,5′-dithiobis-(2-nitrobenzoic acid) (Sigma–Aldrich) through alkaline hydrolysis as described (53 (link)). NADPH was purchased from Carbosynth and trypsin (sequencing grade) from Promega. HOSCN was generated and quantified as described (21 (link)), kept on ice, and used within 30 min of quantification.
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10

Mycobacterium Antibody Avidity Assay

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Antigenic fractions, protein lysates and live mycobacteria were plated as described above. After 4°C incubation overnight, plates were washed with PBST and blocked with 3% bovine serum albumin (BSA) in PBS-T. Plates were sequentially washed in PBST, incubated with immune and control plasma diluted at a 1∶64 in 0.5% BSA in PBST for two hours at room temperature, re-washed in PBST and incubated with between 0.01 and 6 M sodium thiocyanate (Sigma) diluted in 0.5% BSA in PBST for 15 minutes at room temperature. PBST-washed plates were then incubated overnight at 4°C in 0.5% BSA in PBST with a 1∶3000 dilution of alkaline-phosphate conjugated goat-anti-human IgG (Fc specific) (Sigma9544). The same 1∶128 dilution of plasma from a patient with active TB disease was used as a positive control. PBST with 0.5% BSA was used as a negative control. After a final PBST wash plates were incubated in 1 µg/mL PNP in CBC-Mg solution. Color development was recorded when POS control reached OD 2.0 as measured at 405 nm by spectrophotometer. The avidity scores are defined as the concentration of sodium thiocyanate where the OD is equal to 50% of the no sodium thiocyanate control value.
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