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8 protocols using ibitreat microscopy chamber

1

Gelatin-Based Hydrogel Characterization

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Gelatin B (average Mw 20 to 25 kDa, bloom strength 75 g), Poloxamer 188, 25% aqueous glutaraldehyde solution, branched polyethyleneimine 25 kDa (bPEI) and solvents have been purchased from Sigma Aldrich (Steinheim, Germany). Sodium metabisulfite was purchased from Merck (Darmstadt, Germany). Fluorescein isothiocyanate-dextran 150 kDa (FITC-dextran) was derived from TdB (Uppsala, Sweden). RPMI-1640 cell culture medium, HBSS buffer and 4′,6-Diamidino-2-phenylindol solution (DAPI) were obtained from Sigma Aldrich LifeScience GmbH (Seelze, Germany). Fetal calf serum (FCS) was purchased from Lonza, (Basel, Switzerland) and glutamine from Gibco–Thermo Fisher Scientific (Darmstadt, Germany). IbiTreat® microscopy chambers were derived from Ibidi GmbH (Martinsried, Germany). Wheat Germ Agglutinin Alexa Fluor™ 633 conjugate (WGA Alexa Fluor™ 633) was purchased from Thermo Fisher Scientific Inc. (Darmstadt, Germany). Mouse and Human Interleukin 6 (IL-6) as well as Mouse and Human Tumor Necrosis Factor Alpha (TNF-α) ELISA kits were purchased from Shanghai Korain Biotech (Shanghai, China).
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2

Spatiotemporal Analysis of Glutathione Redox State

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Image acquisition of living cells stably transfected with roGFP2 or Grx1-roGFP2 constructs were performed in μ-Slide eight well or μ-Slide VI channel, ibiTreat microscopy chambers (Ibidi, Munich, Germany) and maintained for 48 h. The cells were washed twice with Dulbecco's phosphate-buffered saline supplemented with 5% FBS and 10 mmol/L glucose prior to imaging. Perfusion of cells cultured in channels was performed with a PHD Ultra syringe pump (Harvard Apparatus, Holliston, MA, USA) at 200 μL/min. Images were collected as described previously.38 (link)To visualize spatiotemporal changes of glutathione poise, raw data were exported to Zen 2009 software (Carl Zeiss) and converted into 395 nm and 494 nm sets of 12-bit TIF images. Next, the pixels belonging only to the probe were selectively segmented.40 The calculated threshold was scaled by a fixed number for all images and the function “graythresh” was implemented in a home-written script in MATLAB (Natick, MA, USA). The pixel-by-pixel 395/494 nm false-color ratio pictures were directly calculated by dividing 395 nm on 494 nm images.
To confirm mitochondrial localization of the mtGrx1-roGFP2 probe in stably transfected CHO cells, 3D images were acquired on a Zeiss ELYRA super-resolution microscope.
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3

HT29 Cell Culture for Microscopy

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HT29 human colorectal cancer cells (ATTC_HTB-38) were grown in triplicates for 24 h on 8-well Nunc Lab-Tek (177,402, Nagle Nunc, Rochester, USA) for confocal microscopy and 8-well Ibitreat microscopy chamber (Ibidi GmbH, Martinsried, German) for STED microscopy (initial cell number: 5000 cell/300 µl/well). For electron microscopy (EM) and DAB immune EM, we cultured the cells on Lab-Tek chamber (initial cell number: 8000 cell/300 µl/well) for 72 h in RPMI 1640 medium (Biosera, Ringmer, UK) supplemented with 2 mM L-glutamine (Merck-Sigma-Aldrich, Darmstadt, Germany), 80 mg/2 ml gentamycin (Sandoz) and 10% sEV-depleted FBS. To preserve the MVB-like sEVCs, we decanted the culture medium carefully from the cultures, instead of aspirating it with a pipette. The sEV depletion was performed by ultracentrifugation of foetal bovine serum (Merck-Sigma-Aldrich, Darmstadt, Germany) in an Optima MAX-XP Benchtop Ultracentrifuge with an MLA-55 fixed-angle rotor (Beckman Coulter, Brea, USA) at 120,000 g for 16 h.
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4

Live Imaging of L. pneumophila Infection in A. castellanii

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A. castellanii 30010 (1.35 × 104 cells) were infected with L. pneumophila Paris G_EP10 at a MOI of 20 for 2 h in a μ-Slide 8 well IbiTreat microscopy chamber (Ibidi). Transmission images were acquired with confocal spinning disk from Andor technology mounted on an Olympus inverted IX81 microscope using Andor Ixon + 897 back illuminated EMCCD camera. Live imaging started 16 h after the end of the infection and run for around 17 h using the spinning disk confocal laser microscopy. Time lapse imaging was realized in 30 °C incubation chamber with x40 objective (512 × 512 pixels, 0.33 μm/pixel) and 1 image every 30 seconds.
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5

Cellular Uptake of Curcumin-Loaded Nanoparticles

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In vitro cellular uptake of nanoparticles was studied using curcumin-loaded PLGA nanoparticles (CNPs). These nanoparticles were prepared essentially as mentioned in the “Preparation and characterization of nanoparticles” section, but using curcumin in the place of imatinib mesylate. MCF-7 cells were seeded in an 8-well ibiTreat microscopy chamber (Ibidi GmbH, Munich, Germany) and allowed to attach and grow. After 24 hours, 150 μL medium containing 100 μg/mL CNPs was added to the cells. After 90 minutes, cells were washed, and were replaced with fresh medium. To track the uptake of nanoparticles, the lysosomes of MCF-7 cells were stained with the LysoTracker® Red probe and analyzed under confocal microscope (Axiovert 135M; Zeiss International, Oberkochen, Germany).
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6

Time-lapse Microscopy of Cell Lines

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KMH2, HDLM2 and L1236 cells were seeded at an initial concentration of 0.3x106 cells/mL (96% viability) in a final volume of 2 mL in a 1u-Slide 4 well ibiTreat microscopy chamber (ibidi, Germany). Differential interference contrast (DIC) images were acquired every 2.5 or 0.5 minutes on a Zeiss Axiovert or Nikon TE2000 microscope, using a Plan-Apo 63x/1.40 Oil DIC objective and a CoolSnap HQ camera (Roper) or CoolSnap HQ camera (Photometrics, Tucson, AZ). Total acquisition time was 73 hours. Acquisition software was IP Lab (Scanalytics, Fairfax, VA) or Micro-Manager software and Fiji software was used for image processing.
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7

Curcumin PLGA Nanoparticle Uptake in MCF-7 Cells

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Human breast cancer cells (MCF-7; ECACC 86012803) were maintained in RPMI 1640 medium supplemented with 10% fetal bovine serum (FBS), 100 U/mL penicillin and 100 μg/mL streptomycin (Invitrogen, Paisley, UK) at 37°C in a humidified incubator with 5% CO2. Cells were seeded in 8-well ibiTreat microscopy chamber (Ibidi, Martisried, Germany) and incubated for 24 h. After confirming the attachment and growth of cells, free curcumin (50 µg/mL) or curcumin loaded PLGA nanoparticles were added to the wells. After 4 h of incubation, fluorescent images were taken with a 63X objective on a Zeiss Axio Observer inverted microscope equipped with a Zeiss LSM 700 confocal module (Carl Zeiss Microimaging GmbH, Jena, Germany).
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8

Immunofluorescence Staining of Tks4 and F-actin

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Cells plated on μ-Slide 8-well ibiTreat Microscopy Chamber (ibidi GmbH, Martinsried, Germany) were fixed in 4% paraformaldehyde in PBS for 10 min, washed with 0.1% Triton X-100 in PBS and blocked with 2.5% FBS in PBS for 30 min. Anti-Tks4 polyclonal rabbit antibody7 (link) was applied at 1:1000 and TRITC-Phalloidin (P1951, Sigma-Aldrich, St. Louis, MO, USA) was applied at 1:500 dilution for 1 h. After washing with 0.05% Triton X-100 in PBS, the sample was incubated with Alexa Fluor 488 labeled anti-rabbit secondary antibody (Molecular Probes®, Thermo Fisher Scientific, Waltham, MA USA) for 30 min at 1:1000 dilution. The pictures of fixed samples were acquired on a Zeiss LSM710 inverted confocal microscope with 63× objective (Carl Zeiss, Jena, Germany). Images were processed using ZEN software (Carl Zeiss, Jena, Germany).
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