The largest database of trusted experimental protocols

6 protocols using glyceraldehyde 3 phosphate dehydrogenase gapdh

1

Analyzing Mitochondrial Dynamics in Metabolism

Check if the same lab product or an alternative is used in the 5 most similar protocols
The reagents and antibodies used in this study were obtained from the indicated suppliers: succinic acid, N-acetyl-L-cysteine (NAC) from Sigma (St. Louis, MO, USA); gemigliptin from LG Chem (Seoul, Korea); primary antibodies: ERK1/2, p-ERK1/2, DRP1, p-DRP1 (Serine 616), MFF, and p-MFF from Cell Signaling Technology (Richmond, CA, USA); p-DRP1 (Serine 616) from Invitrogen (Waltham, MA, USA), glyceraldehyde 3-phosphate dehydrogenase (GAPDH) from GeneTex (Irvine, CA, USA), GPR91 from Santa Cruz Biotechnology (Dallas, TX, USA), α-SMA from Abcam (Cambridge, England), and collagen 1 from Sigma-Aldrich (St. Louis, MO, USA).
+ Open protocol
+ Expand
2

Reagent Sources for Cellular Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
The reagents used in the study were obtained from the indicated suppliers: TGF-β1 from Bio-Techne (Minneapolis, MN, USA); irisin from Cayman Chemical (Ann arbor, MI, USA); LPS from Sigma (St. Louis, MO, USA), antibodies against α-smooth muscle actin (α-SMA) from Abcam (Cambridge, England), collagen type 1 alpha 1 (COL1A1) from Sigma-Aldrich (St. Louis, MO, USA), interleukin-6 (IL-6) from Santa Cruz Biotechnology (Santa Cruz, CA, USA), glyceraldehyde 3-phosphate dehydrogenase (GAPDH) from GeneTex (Irvine, CA, USA); cleaved-poly (ADP-ribose) polymerase (PARP), PARP, phosphorylated myosin light chain 2 (p-MLC 2), total myosin light chain 2 (t-MLC 2), and IL-1β from Cell Signaling Technology (Danvers, MA, USA); all other materials were obtained from Sigma.
+ Open protocol
+ Expand
3

Western Blot Analysis of Protein Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein concentrations were determined using a BCA protein assay kit. Equal amounts (20 μg/lane) of protein were separated using 10% sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) at 70–120 V. The proteins were next transferred to polyvinylidene difluoride (PVDF) membranes through electroblotting for 60 min at 100 V. The transferred membranes were then blocked with 5% non-fat milk [1 g non-fat milk dissolved in 20 mL Tris-buffered saline with 0.05% Tween-20 (TBST)] for 2 h on a shaking table. Subsequently, the membranes were incubated with primary antibodies, including anti-eNOS (1:1000; Abcam, MA, USA), p-eNOS Ser 1177 (1:1000; Abcam, MA, USA), RAGEs (1:1000; Abcam, MA, USA), sirtuin-3 (SIRT3; 1:1000; SantaCruz, Texas, USA), and glyceraldehyde 3-phosphate dehydrogenase (GAPDH; 1:2000; GeneTex, CA, USA) at 4 °C overnight on a shaking table. The membranes were then probed with their respective secondary antibodies conjugated with horseradish peroxidase including rabbit IgG antibody and mouse IgG antibody (1:10000; GeneTex, CA, USA) at room temperature for 50 min. After the probing process, each of the membranes was washed three times with TBST for 5 min. The bands were then visualized using an enhanced chemiluminescence detection kit (ECL kit) (Millipore, Merck KGaA, Darmstadt, Germany). The protein bands were quantified using Image J software.
+ Open protocol
+ Expand
4

Protein Extraction and Western Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were harvested by centrifugation, washed with ice-cold phosphate-buffered saline (PBS) and lysed with RIPA cell lysis buffer (Cell signaling, Danvers, MA, USA). Protein concentration was determined by bicinchoninic acid assay (BioRad, Hercules, CA, USA) according to the manufacturer’s protocol. Primary antibodies purchased from Cell Signaling Technology were caspase-8 (#9746; 1:1,000), cleaved caspase-3 (#9661; 1:1,000), and poly (ADP-ribose) polymerase (PARP; #9542; 1:1,000). cFLIP antibodies (sc-5276, 1:200) were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). β-actin—horseradish peroxidase (Sigma-Aldrich, 1:40,000) and glyceraldehyde 3-phosphate dehydrogenase (GAPDH) (GeneTex, Irvine, CA, USA; GTX100118, 1:20,000) antibodies were used to compare loading of individual lanes. Horseradish peroxidase—labeled goat anti-rabbit and goat anti-mouse secondary antibodies (1:5,000) were obtained from Jackson Laboratory (Bar Harbor, ME, USA). Intensity of protein bands were quantified through densitometry using Image J software (National Institutes of Health, Bethesda, MD, USA).
+ Open protocol
+ Expand
5

Western Blotting for HCV, MAPK, and NF-κB

Check if the same lab product or an alternative is used in the 5 most similar protocols
The standard procedure of Western blotting was performed as described previously (Lee et al., 2011 (link)). The membranes were probed with monoclonal antibodies specific for HCV NS5B (1:5000; Abcam, Cambridge, MA, USA), glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (1:10000; GeneTex, Irvine, CA, USA), anti-COX-2 antibody (1:1000; Cayman, MI, USA), anti-MAPK (phosphorylated and unphosphorylated forms of ERK1/2, p38, and JNK), anti-IKKα, anti-phospho-IKKα/β (Ser176/180), anti-NF-κB, anti-IκB-α, anti-phospho-IκB-α (Ser32) (1:1000; Cell Signaling Technology, Inc., Danvers, MA, USA), or anti-C-Myc antibody (1:1000; GeneTex, Irvine, CA, USA). The ECL detection kit was used for the signal detection (PerkinElmer, Shelton, CT, USA).
+ Open protocol
+ Expand
6

Piperlongumine-Induced Cellular Apoptosis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The cells (1 × 106 cells/dish) were seeded in a 10 cm cell culture dish and placed in a 37 °C incubator overnight. The cells were cultured with control medium or piperlongumine, and cellular apoptosis was measured with Annexin V (Sigma-Aldrich) and PI staining. Flow cytometry was used to measure apoptosis as previously reported [62 (link),63 (link)]. Proteins involved in piperlongumine-mediated cellular apoptosis were verified with Western blots. Primary antibodies, including caspase-9, caspase-3, and PARP, were purchased from Cell Signaling Inc. (Danvers, MA, USA). Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) was used as a loading control, and the primary antibody was purchased from GeneTex (San Antonio, TX, USA). Three independent assays were performed.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!